Wall clock time and date at job start Wed Apr 1 2020 04:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47241 * 2 1 4 4 N 1.46507 * 109.47149 * 240.00242 * 2 1 3 5 5 C 1.34776 * 119.99700 * 85.00041 * 4 2 1 6 6 O 1.21579 * 120.00320 * 359.97438 * 5 4 2 7 7 N 1.34774 * 119.99340 * 179.97438 * 5 4 2 8 8 C 1.39959 * 119.99793 * 184.51793 * 7 5 4 9 9 C 1.39288 * 119.94264 * 144.36223 * 8 7 5 10 10 C 1.38498 * 120.42732 * 179.97438 * 9 8 7 11 11 C 1.37677 * 120.31854 * 359.97438 * 10 9 8 12 12 C 1.40740 * 119.88848 * 0.02562 * 11 10 9 13 13 C 1.41406 * 120.21647 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00685 * 155.37569 * 13 12 11 15 15 C 1.39938 * 119.99598 * 335.37754 * 13 12 11 16 16 N 1.30831 * 119.99963 * 344.58866 * 15 13 12 17 17 Si 1.86798 * 120.00089 * 164.59475 * 15 13 12 18 18 H 1.48501 * 109.47366 * 89.99377 * 17 15 13 19 19 H 1.48495 * 109.47181 * 209.99796 * 17 15 13 20 20 H 1.48509 * 109.46954 * 329.99860 * 17 15 13 21 21 C 1.38234 * 119.94824 * 324.09632 * 8 7 5 22 22 C 1.53003 * 109.47118 * 120.00372 * 2 1 3 23 23 H 1.09004 * 109.47023 * 185.00348 * 22 2 1 24 24 C 1.52996 * 109.47074 * 64.99941 * 22 2 1 25 25 N 1.46907 * 109.46893 * 304.99627 * 22 2 1 26 26 C 1.47007 * 111.00138 * 303.63861 * 25 22 2 27 27 C 1.53098 * 109.26000 * 177.60480 * 26 25 22 28 28 O 1.43021 * 109.25606 * 56.84997 * 27 26 25 29 29 C 1.43019 * 113.73680 * 301.33087 * 28 27 26 30 30 C 1.47006 * 110.99759 * 180.02562 * 25 22 2 31 31 H 1.08998 * 109.47239 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47450 * 299.99849 * 1 2 3 33 33 H 1.08999 * 109.46893 * 59.99906 * 1 2 3 34 34 H 0.97000 * 119.99614 * 264.99906 * 4 2 1 35 35 H 0.97000 * 120.00417 * 4.52666 * 7 5 4 36 36 H 1.07993 * 119.79146 * 0.02562 * 9 8 7 37 37 H 1.07997 * 119.83745 * 180.02562 * 10 9 8 38 38 H 1.08001 * 120.06005 * 179.97438 * 11 10 9 39 39 H 0.96998 * 119.99647 * 179.97438 * 16 15 13 40 40 H 1.07999 * 120.16037 * 359.97438 * 21 8 7 41 41 H 1.08994 * 109.47190 * 60.00346 * 24 22 2 42 42 H 1.09003 * 109.46516 * 180.02562 * 24 22 2 43 43 H 1.09000 * 109.46929 * 299.99687 * 24 22 2 44 44 H 1.09004 * 109.50940 * 297.54335 * 26 25 22 45 45 H 1.09003 * 109.51121 * 57.66991 * 26 25 22 46 46 H 1.08996 * 109.50518 * 296.91541 * 27 26 25 47 47 H 1.09003 * 109.54507 * 176.80256 * 27 26 25 48 48 H 1.09005 * 109.50547 * 298.73916 * 29 28 27 49 49 H 1.08997 * 109.54279 * 178.62983 * 29 28 27 50 50 H 1.09000 * 109.50961 * 302.32734 * 30 25 22 51 51 H 1.09003 * 109.50740 * 62.41726 * 30 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1470 -0.0181 -2.3572 6 8 1.8574 1.1614 -2.4118 7 7 2.5968 -0.6534 -3.4574 8 6 2.8204 0.0648 -4.6377 9 6 3.8819 -0.2803 -5.4710 10 6 4.1122 0.4231 -6.6416 11 6 3.2930 1.4718 -6.9947 12 6 2.2166 1.8320 -6.1627 13 6 1.3706 2.9075 -6.5190 14 1 0.3593 2.9471 -6.1420 15 6 1.8437 3.9208 -7.3602 16 7 3.1282 4.0464 -7.5747 17 14 0.6414 5.0943 -8.1768 18 1 0.4214 6.2697 -7.2963 19 1 1.1974 5.5470 -9.4772 20 1 -0.6506 4.3989 -8.4060 21 6 1.9843 1.1118 -4.9774 22 6 2.0400 -0.7213 1.2492 23 1 3.1263 -0.6444 1.2952 24 6 1.6352 -2.1955 1.1878 25 7 1.4542 -0.1020 2.4457 26 6 1.7507 1.3371 2.4928 27 6 1.0733 1.9523 3.7202 28 8 1.5172 1.2693 4.8958 29 6 1.2438 -0.1344 4.8838 30 6 1.9234 -0.7704 3.6681 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.2490 -1.6318 -1.1527 35 1 2.7654 -1.6082 -3.4314 36 1 4.5292 -1.1022 -5.2030 37 1 4.9377 0.1471 -7.2808 38 1 3.4766 2.0178 -7.9083 39 1 3.4561 4.7485 -8.1581 40 1 1.1582 1.3771 -4.3344 41 1 2.0698 -2.6550 0.3002 42 1 1.9982 -2.7092 2.0781 43 1 0.5489 -2.2724 1.1420 44 1 2.8286 1.4847 2.5596 45 1 1.3725 1.8165 1.5898 46 1 -0.0080 1.8523 3.6275 47 1 1.3365 3.0077 3.7913 48 1 0.1673 -0.2952 4.8249 49 1 1.6303 -0.5890 5.7960 50 1 1.6711 -1.8298 3.6234 51 1 3.0041 -0.6568 3.7532 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455921997.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:38 Heat of formation + Delta-G solvation = -37.057642 kcal Electronic energy + Delta-G solvation = -30802.219071 eV Core-core repulsion = 26701.765352 eV Total energy + Delta-G solvation = -4100.453720 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.50043 -39.70501 -37.87516 -36.93950 -34.72523 -34.25761 -33.00271 -31.74967 -31.29082 -29.75549 -29.39304 -27.69386 -26.98051 -25.24626 -24.80057 -23.66562 -21.95484 -21.03556 -20.79218 -20.09935 -19.62607 -18.15828 -17.57378 -16.94238 -16.44188 -16.00181 -15.70159 -15.35236 -15.29874 -15.07288 -14.94749 -14.62223 -14.46274 -14.26645 -14.07501 -13.73984 -13.22697 -12.92214 -12.81343 -12.71833 -12.39278 -12.22249 -12.13106 -11.97624 -11.77668 -11.69209 -11.62794 -11.32630 -11.19148 -11.04505 -10.80942 -10.64857 -10.59266 -10.45012 -10.12074 -9.98664 -9.69465 -9.49181 -9.14860 -8.93380 -8.78905 -8.72161 -7.37921 -6.82786 -6.64901 -4.27613 2.76965 2.86329 3.03003 3.12348 3.17066 3.26211 3.44899 3.58444 3.75406 4.00771 4.33887 4.52087 4.60411 4.61165 4.67764 4.71494 4.82177 4.88131 4.97197 4.98587 5.16467 5.26784 5.31442 5.36128 5.42208 5.46455 5.55970 5.62276 5.65385 5.77610 5.79751 5.92568 6.02596 6.29371 6.33891 6.45659 6.54441 6.60394 6.71950 6.81595 6.85707 6.86057 7.10477 7.17925 7.31561 7.40932 7.74848 7.89774 8.06489 8.16897 8.31852 8.49759 8.73158 8.96401 9.03751 9.11656 10.28201 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015147 B = 0.002243 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.160759 B =12482.276927 C =13711.765753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.168 3.832 3 H 0.088 0.912 4 N -0.747 5.747 5 C 0.698 3.302 6 O -0.562 6.562 7 N -0.682 5.682 8 C 0.166 3.834 9 C -0.264 4.264 10 C -0.093 4.093 11 C -0.175 4.175 12 C 0.117 3.883 13 C -0.455 4.455 14 H 0.076 0.924 15 C 0.074 3.926 16 N -0.796 5.796 17 Si 0.909 3.091 18 H -0.270 1.270 19 H -0.277 1.277 20 H -0.261 1.261 21 C -0.208 4.208 22 C 0.075 3.925 23 H 0.048 0.952 24 C -0.150 4.150 25 N -0.523 5.523 26 C 0.008 3.992 27 C 0.065 3.935 28 O -0.388 6.388 29 C 0.065 3.935 30 C 0.015 3.985 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.390 0.610 35 H 0.393 0.607 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.121 0.879 39 H 0.279 0.721 40 H 0.112 0.888 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.073 0.927 44 H 0.045 0.955 45 H 0.096 0.904 46 H 0.061 0.939 47 H 0.099 0.901 48 H 0.060 0.940 49 H 0.096 0.904 50 H 0.090 0.910 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.583 -11.272 19.960 23.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.062 3.938 3 H 0.106 0.894 4 N -0.406 5.406 5 C 0.398 3.602 6 O -0.437 6.437 7 N -0.328 5.328 8 C 0.074 3.926 9 C -0.286 4.286 10 C -0.112 4.112 11 C -0.195 4.195 12 C 0.114 3.886 13 C -0.484 4.484 14 H 0.095 0.905 15 C -0.143 4.143 16 N -0.422 5.422 17 Si 0.733 3.267 18 H -0.195 1.195 19 H -0.202 1.202 20 H -0.185 1.185 21 C -0.230 4.230 22 C -0.034 4.034 23 H 0.065 0.935 24 C -0.207 4.207 25 N -0.249 5.249 26 C -0.120 4.120 27 C -0.012 4.012 28 O -0.306 6.306 29 C -0.012 4.012 30 C -0.113 4.113 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.225 0.775 35 H 0.226 0.774 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.139 0.861 39 H 0.090 0.910 40 H 0.130 0.870 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.063 0.937 45 H 0.114 0.886 46 H 0.079 0.921 47 H 0.117 0.883 48 H 0.078 0.922 49 H 0.114 0.886 50 H 0.108 0.892 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.095 -9.961 19.950 22.512 hybrid contribution 0.720 -0.456 -0.531 1.004 sum -2.376 -10.416 19.419 22.164 Atomic orbital electron populations 1.22120 0.94601 1.02063 1.02531 1.20670 0.94817 0.96539 0.81783 0.89443 1.45274 1.72973 1.13388 1.08964 1.15973 0.78827 0.85270 0.80091 1.90981 1.54826 1.14060 1.83862 1.42560 1.69546 1.10796 1.09925 1.17230 0.95718 0.95153 0.84525 1.20020 1.01356 1.06745 1.00457 1.20446 0.98553 0.96425 0.95790 1.21398 0.98747 0.97983 1.01337 1.17529 0.91487 0.90770 0.88854 1.19550 0.99629 1.04490 1.24765 0.90541 1.25903 0.95399 0.98036 0.94950 1.69830 1.13776 1.29155 1.29432 0.86311 0.81364 0.80172 0.78844 1.19531 1.20172 1.18513 1.21090 1.02661 1.01039 0.98190 1.21829 0.96805 0.95030 0.89741 0.93453 1.21953 1.03118 0.94030 1.01609 1.62218 1.58692 1.02628 1.01385 1.22934 0.99687 0.88866 1.00496 1.22681 0.98603 0.96373 0.83536 1.87990 1.82144 1.20283 1.40180 1.22647 0.99832 0.81458 0.97306 1.22851 0.98281 0.99791 0.90403 0.92660 0.90957 0.92243 0.77548 0.77413 0.89502 0.89150 0.86099 0.91035 0.87010 0.92067 0.92248 0.90850 0.93696 0.88575 0.92082 0.88289 0.92212 0.88610 0.89216 0.93954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.90 37.16 0.33 -1.46 16 2 C 0.17 1.98 1.87 -67.93 -0.13 1.85 16 3 H 0.09 1.26 6.03 -51.93 -0.31 0.94 16 4 N -0.75 -9.56 4.99 -58.67 -0.29 -9.86 16 5 C 0.70 12.79 8.36 -86.92 -0.73 12.06 16 6 O -0.56 -13.08 13.49 5.30 0.07 -13.01 16 7 N -0.68 -12.34 5.34 -14.27 -0.08 -12.41 16 8 C 0.17 3.83 6.28 -83.76 -0.53 3.30 16 9 C -0.26 -5.91 9.97 -39.10 -0.39 -6.30 16 10 C -0.09 -2.21 10.02 -39.69 -0.40 -2.61 16 11 C -0.17 -4.67 8.69 -38.84 -0.34 -5.01 16 12 C 0.12 3.27 5.58 -106.85 -0.60 2.67 16 13 C -0.45 -12.69 9.06 -37.74 -0.34 -13.03 16 14 H 0.08 2.08 7.89 -52.49 -0.41 1.67 16 15 C 0.07 1.94 5.19 -17.34 -0.09 1.85 16 16 N -0.80 -21.30 10.82 55.55 0.60 -20.70 16 17 Si 0.91 19.41 29.59 -169.99 -5.03 14.38 16 18 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 19 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 20 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 21 C -0.21 -5.51 8.43 -38.69 -0.33 -5.84 16 22 C 0.07 0.67 2.10 -67.71 -0.14 0.53 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 24 C -0.15 -1.04 8.48 37.16 0.32 -0.73 16 25 N -0.52 -4.50 3.69 -226.33 -0.84 -5.33 16 26 C 0.01 0.08 4.96 -3.71 -0.02 0.06 16 27 C 0.07 0.55 7.01 37.21 0.26 0.82 16 28 O -0.39 -3.78 10.83 -35.23 -0.38 -4.16 16 29 C 0.06 0.47 7.01 37.21 0.26 0.73 16 30 C 0.01 0.11 5.33 -3.71 -0.02 0.09 16 31 H 0.05 0.57 6.57 -51.93 -0.34 0.23 16 32 H 0.07 0.77 6.93 -51.93 -0.36 0.41 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.39 3.75 6.59 -40.82 -0.27 3.48 16 35 H 0.39 5.42 8.84 -40.82 -0.36 5.06 16 36 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 37 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 38 H 0.12 3.31 6.06 -52.49 -0.32 2.99 16 39 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 40 H 0.11 3.08 6.27 -52.49 -0.33 2.75 16 41 H 0.06 0.38 6.29 -51.93 -0.33 0.05 16 42 H 0.06 0.35 6.35 -51.93 -0.33 0.02 16 43 H 0.07 0.54 6.57 -51.93 -0.34 0.20 16 44 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.10 0.95 5.84 -51.93 -0.30 0.65 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.09 0.53 6.19 -51.93 -0.32 0.21 16 51 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 393.28 15.07 5.93 5.93 Total: -1.00 -32.64 393.28 -10.58 -43.22 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -7.69 Total: 12.98 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -2.87 Total: -11.03 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -0.60 Total: -48.30 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.31 Total: -17.17 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.64 -10.58 -43.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455921997.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.163 kcal (2) G-P(sol) polarization free energy of solvation -32.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds