Wall clock time and date at job start Wed Apr 1 2020 04:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47241 * 2 1 4 4 N 1.46507 * 109.47149 * 240.00242 * 2 1 3 5 5 C 1.34776 * 119.99700 * 85.00041 * 4 2 1 6 6 O 1.21579 * 120.00320 * 359.97438 * 5 4 2 7 7 N 1.34774 * 119.99340 * 179.97438 * 5 4 2 8 8 C 1.39959 * 119.99793 * 184.51793 * 7 5 4 9 9 C 1.39288 * 119.94264 * 144.36223 * 8 7 5 10 10 C 1.38498 * 120.42732 * 179.97438 * 9 8 7 11 11 C 1.37677 * 120.31854 * 359.97438 * 10 9 8 12 12 C 1.40740 * 119.88848 * 0.02562 * 11 10 9 13 13 C 1.41406 * 120.21647 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00685 * 155.37569 * 13 12 11 15 15 C 1.39938 * 119.99598 * 335.37754 * 13 12 11 16 16 N 1.30831 * 119.99963 * 344.58866 * 15 13 12 17 17 Si 1.86798 * 120.00089 * 164.59475 * 15 13 12 18 18 H 1.48501 * 109.47366 * 89.99377 * 17 15 13 19 19 H 1.48495 * 109.47181 * 209.99796 * 17 15 13 20 20 H 1.48509 * 109.46954 * 329.99860 * 17 15 13 21 21 C 1.38234 * 119.94824 * 324.09632 * 8 7 5 22 22 C 1.53003 * 109.47118 * 120.00372 * 2 1 3 23 23 H 1.09004 * 109.47023 * 185.00348 * 22 2 1 24 24 C 1.52996 * 109.47074 * 64.99941 * 22 2 1 25 25 N 1.46907 * 109.46893 * 304.99627 * 22 2 1 26 26 C 1.47007 * 111.00138 * 303.63861 * 25 22 2 27 27 C 1.53098 * 109.26000 * 177.60480 * 26 25 22 28 28 O 1.43021 * 109.25606 * 56.84997 * 27 26 25 29 29 C 1.43019 * 113.73680 * 301.33087 * 28 27 26 30 30 C 1.47006 * 110.99759 * 180.02562 * 25 22 2 31 31 H 1.08998 * 109.47239 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47450 * 299.99849 * 1 2 3 33 33 H 1.08999 * 109.46893 * 59.99906 * 1 2 3 34 34 H 0.97000 * 119.99614 * 264.99906 * 4 2 1 35 35 H 0.97000 * 120.00417 * 4.52666 * 7 5 4 36 36 H 1.07993 * 119.79146 * 0.02562 * 9 8 7 37 37 H 1.07997 * 119.83745 * 180.02562 * 10 9 8 38 38 H 1.08001 * 120.06005 * 179.97438 * 11 10 9 39 39 H 0.96998 * 119.99647 * 179.97438 * 16 15 13 40 40 H 1.07999 * 120.16037 * 359.97438 * 21 8 7 41 41 H 1.08994 * 109.47190 * 60.00346 * 24 22 2 42 42 H 1.09003 * 109.46516 * 180.02562 * 24 22 2 43 43 H 1.09000 * 109.46929 * 299.99687 * 24 22 2 44 44 H 1.09004 * 109.50940 * 297.54335 * 26 25 22 45 45 H 1.09003 * 109.51121 * 57.66991 * 26 25 22 46 46 H 1.08996 * 109.50518 * 296.91541 * 27 26 25 47 47 H 1.09003 * 109.54507 * 176.80256 * 27 26 25 48 48 H 1.09005 * 109.50547 * 298.73916 * 29 28 27 49 49 H 1.08997 * 109.54279 * 178.62983 * 29 28 27 50 50 H 1.09000 * 109.50961 * 302.32734 * 30 25 22 51 51 H 1.09003 * 109.50740 * 62.41726 * 30 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1470 -0.0181 -2.3572 6 8 1.8574 1.1614 -2.4118 7 7 2.5968 -0.6534 -3.4574 8 6 2.8204 0.0648 -4.6377 9 6 3.8819 -0.2803 -5.4710 10 6 4.1122 0.4231 -6.6416 11 6 3.2930 1.4718 -6.9947 12 6 2.2166 1.8320 -6.1627 13 6 1.3706 2.9075 -6.5190 14 1 0.3593 2.9471 -6.1420 15 6 1.8437 3.9208 -7.3602 16 7 3.1282 4.0464 -7.5747 17 14 0.6414 5.0943 -8.1768 18 1 0.4214 6.2697 -7.2963 19 1 1.1974 5.5470 -9.4772 20 1 -0.6506 4.3989 -8.4060 21 6 1.9843 1.1118 -4.9774 22 6 2.0400 -0.7213 1.2492 23 1 3.1263 -0.6444 1.2952 24 6 1.6352 -2.1955 1.1878 25 7 1.4542 -0.1020 2.4457 26 6 1.7507 1.3371 2.4928 27 6 1.0733 1.9523 3.7202 28 8 1.5172 1.2693 4.8958 29 6 1.2438 -0.1344 4.8838 30 6 1.9234 -0.7704 3.6681 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.2490 -1.6318 -1.1527 35 1 2.7654 -1.6082 -3.4314 36 1 4.5292 -1.1022 -5.2030 37 1 4.9377 0.1471 -7.2808 38 1 3.4766 2.0178 -7.9083 39 1 3.4561 4.7485 -8.1581 40 1 1.1582 1.3771 -4.3344 41 1 2.0698 -2.6550 0.3002 42 1 1.9982 -2.7092 2.0781 43 1 0.5489 -2.2724 1.1420 44 1 2.8286 1.4847 2.5596 45 1 1.3725 1.8165 1.5898 46 1 -0.0080 1.8523 3.6275 47 1 1.3365 3.0077 3.7913 48 1 0.1673 -0.2952 4.8249 49 1 1.6303 -0.5890 5.7960 50 1 1.6711 -1.8298 3.6234 51 1 3.0041 -0.6568 3.7532 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455921997.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:37 Heat of formation + Delta-G solvation = -59.912539 kcal Electronic energy + Delta-G solvation = -30803.210134 eV Core-core repulsion = 26701.765352 eV Total energy + Delta-G solvation = -4101.444783 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.67053 -40.76738 -39.30332 -38.22311 -36.21326 -35.63792 -34.81909 -32.40896 -32.33681 -31.72889 -30.33577 -29.37731 -27.64121 -27.23993 -25.65690 -24.48867 -23.40974 -22.72136 -21.89192 -21.64070 -20.55160 -19.65842 -19.31667 -17.75350 -17.53126 -17.11971 -16.93089 -16.70178 -16.42958 -16.42838 -16.06650 -15.91718 -15.77389 -15.22883 -15.13961 -14.88586 -14.83568 -14.58536 -14.08137 -13.81774 -13.55073 -13.42213 -13.15172 -13.11861 -13.00460 -12.81422 -12.72295 -12.59580 -12.57011 -12.31684 -12.20965 -12.06360 -11.97505 -11.57788 -11.46623 -11.42121 -11.29094 -11.00784 -10.67098 -10.64105 -10.17082 -9.44775 -9.36772 -8.68609 -8.59244 -6.35441 0.94514 1.05359 1.35714 1.47414 1.52663 1.62218 2.18364 2.22600 2.67476 2.75404 2.95718 3.32676 3.53566 3.76694 3.83203 3.92038 4.00968 4.11477 4.17758 4.27718 4.33474 4.44865 4.49474 4.57305 4.57620 4.66480 4.69824 4.71594 4.78948 4.82939 4.91193 4.96109 5.00681 5.04275 5.07935 5.13456 5.16517 5.21609 5.26547 5.35452 5.41582 5.52168 5.74367 5.85315 5.88261 5.93347 6.07989 6.14764 6.18326 6.20254 6.38891 6.71170 6.96223 7.03224 7.11963 7.62599 8.35179 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015147 B = 0.002243 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.160759 B =12482.276927 C =13711.765753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.167 3.833 3 H 0.056 0.944 4 N -0.721 5.721 5 C 0.695 3.305 6 O -0.616 6.616 7 N -0.669 5.669 8 C 0.174 3.826 9 C -0.251 4.251 10 C -0.092 4.092 11 C -0.200 4.200 12 C 0.085 3.915 13 C -0.499 4.499 14 H 0.064 0.936 15 C 0.033 3.967 16 N -0.826 5.826 17 Si 0.984 3.016 18 H -0.266 1.266 19 H -0.259 1.259 20 H -0.260 1.260 21 C -0.235 4.235 22 C 0.084 3.916 23 H 0.042 0.958 24 C -0.147 4.147 25 N -0.523 5.523 26 C 0.010 3.990 27 C 0.067 3.933 28 O -0.407 6.407 29 C 0.060 3.940 30 C 0.017 3.983 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.022 0.978 34 H 0.411 0.589 35 H 0.418 0.582 36 H 0.132 0.868 37 H 0.123 0.877 38 H 0.107 0.893 39 H 0.288 0.712 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.033 0.967 45 H 0.083 0.917 46 H 0.065 0.935 47 H 0.105 0.895 48 H 0.065 0.935 49 H 0.115 0.885 50 H 0.112 0.888 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.046 -13.822 21.178 25.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.062 3.938 3 H 0.075 0.925 4 N -0.380 5.380 5 C 0.395 3.605 6 O -0.495 6.495 7 N -0.318 5.318 8 C 0.080 3.920 9 C -0.272 4.272 10 C -0.111 4.111 11 C -0.220 4.220 12 C 0.082 3.918 13 C -0.529 4.529 14 H 0.082 0.918 15 C -0.181 4.181 16 N -0.452 5.452 17 Si 0.804 3.196 18 H -0.190 1.190 19 H -0.183 1.183 20 H -0.184 1.184 21 C -0.257 4.257 22 C -0.025 4.025 23 H 0.060 0.940 24 C -0.204 4.204 25 N -0.249 5.249 26 C -0.118 4.118 27 C -0.010 4.010 28 O -0.326 6.326 29 C -0.016 4.016 30 C -0.111 4.111 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.042 0.958 34 H 0.249 0.751 35 H 0.255 0.745 36 H 0.150 0.850 37 H 0.141 0.859 38 H 0.125 0.875 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.051 0.949 45 H 0.101 0.899 46 H 0.084 0.916 47 H 0.123 0.877 48 H 0.083 0.917 49 H 0.133 0.867 50 H 0.130 0.870 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.542 -12.610 21.222 24.816 hybrid contribution 0.616 0.211 -0.758 0.999 sum -1.925 -12.399 20.464 24.005 Atomic orbital electron populations 1.22014 0.94247 1.02818 1.01175 1.20726 0.94991 0.95538 0.82585 0.92537 1.45017 1.71397 1.14134 1.07416 1.16194 0.78340 0.84772 0.81197 1.90965 1.56926 1.16814 1.84804 1.42285 1.69274 1.11782 1.08448 1.17279 0.94740 0.94123 0.85855 1.20450 1.00716 1.06923 0.99114 1.20831 0.98484 0.95139 0.96615 1.21369 0.99781 0.99669 1.01225 1.17878 0.92510 0.91540 0.89839 1.19748 0.99546 1.06266 1.27340 0.91810 1.26754 0.97299 0.99269 0.94772 1.69871 1.15317 1.30133 1.29913 0.85198 0.78695 0.77519 0.78205 1.19047 1.18269 1.18372 1.21032 1.03493 1.03198 0.97998 1.21726 0.96316 0.96143 0.88282 0.93981 1.21969 1.03281 0.92065 1.03110 1.62255 1.58625 1.02158 1.01911 1.22867 0.98927 0.89685 1.00366 1.22688 0.98673 0.96684 0.82938 1.87966 1.82417 1.21741 1.40452 1.22847 1.00315 0.80307 0.98153 1.22929 0.97878 1.00786 0.89514 0.90716 0.90046 0.95843 0.75065 0.74454 0.85034 0.85904 0.87533 0.90126 0.89431 0.90966 0.90404 0.90773 0.94897 0.89916 0.91646 0.87723 0.91712 0.86686 0.87033 0.94594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.90 71.98 0.64 -2.68 16 2 C 0.17 3.90 1.87 44.99 0.08 3.98 16 3 H 0.06 1.71 6.03 -2.39 -0.01 1.70 16 4 N -0.72 -17.60 4.99 -457.81 -2.29 -19.89 16 5 C 0.69 25.50 8.36 179.06 1.50 26.99 16 6 O -0.62 -30.11 13.49 -3.97 -0.05 -30.16 16 7 N -0.67 -23.33 5.34 -317.33 -1.69 -25.02 16 8 C 0.17 7.96 6.28 38.09 0.24 8.20 16 9 C -0.25 -10.62 9.97 22.58 0.23 -10.40 16 10 C -0.09 -4.26 10.02 22.20 0.22 -4.04 16 11 C -0.20 -11.01 8.69 22.75 0.20 -10.81 16 12 C 0.09 5.02 5.58 -21.31 -0.12 4.90 16 13 C -0.50 -29.62 9.06 23.46 0.21 -29.41 16 14 H 0.06 3.76 7.89 -2.91 -0.02 3.74 16 15 C 0.03 1.79 5.19 85.25 0.44 2.24 16 16 N -0.83 -45.63 10.82 21.83 0.24 -45.40 16 17 Si 0.98 40.98 29.59 68.60 2.03 43.01 16 18 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 19 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 20 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 21 C -0.24 -13.04 8.43 22.85 0.19 -12.85 16 22 C 0.08 1.36 2.10 44.91 0.09 1.46 16 23 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 24 C -0.15 -1.52 8.48 71.98 0.61 -0.91 16 25 N -0.52 -8.25 3.69 -869.97 -3.21 -11.47 16 26 C 0.01 0.18 4.96 86.32 0.43 0.61 16 27 C 0.07 1.12 7.01 72.01 0.50 1.63 16 28 O -0.41 -7.50 10.83 -148.98 -1.61 -9.11 16 29 C 0.06 0.75 7.01 72.02 0.50 1.25 16 30 C 0.02 0.20 5.33 86.32 0.46 0.66 16 31 H 0.07 1.42 6.57 -2.39 -0.02 1.40 16 32 H 0.08 1.72 6.93 -2.39 -0.02 1.70 16 33 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.41 6.68 6.59 -92.71 -0.61 6.07 16 35 H 0.42 10.21 8.84 -92.71 -0.82 9.39 16 36 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 37 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 38 H 0.11 6.06 6.06 -2.91 -0.02 6.04 16 39 H 0.29 14.26 8.30 -92.71 -0.77 13.49 16 40 H 0.09 5.19 6.27 -2.91 -0.02 5.18 16 41 H 0.07 0.60 6.29 -2.39 -0.02 0.58 16 42 H 0.08 0.57 6.35 -2.39 -0.02 0.56 16 43 H 0.07 0.81 6.57 -2.39 -0.02 0.79 16 44 H 0.03 0.68 8.14 -2.38 -0.02 0.66 16 45 H 0.08 1.76 5.84 -2.39 -0.01 1.74 16 46 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 49 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.11 0.89 6.19 -2.39 -0.01 0.87 16 51 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -76.61 393.28 -0.62 -77.23 By element: Atomic # 1 Polarization: 40.45 SS G_CDS: -0.46 Total: 39.98 kcal Atomic # 6 Polarization: -25.61 SS G_CDS: 6.44 Total: -19.17 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -6.96 Total: -101.77 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -1.67 Total: -39.28 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -76.61 -0.62 -77.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455921997.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.317 kcal (2) G-P(sol) polarization free energy of solvation -76.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds