Wall clock time and date at job start Wed Apr 1 2020 04:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47622 * 2 1 4 4 C 1.53004 * 109.47390 * 239.99965 * 2 1 3 5 5 H 1.09007 * 109.46953 * 305.07432 * 4 2 1 6 6 C 1.52996 * 109.47383 * 185.06785 * 4 2 1 7 7 N 1.46499 * 109.46989 * 65.06810 * 4 2 1 8 8 C 1.34776 * 120.00092 * 205.00422 * 7 4 2 9 9 O 1.21594 * 119.99960 * 359.97438 * 8 7 4 10 10 N 1.34776 * 120.00425 * 179.97438 * 8 7 4 11 11 C 1.39954 * 120.00408 * 174.86656 * 10 8 7 12 12 C 1.39286 * 119.94787 * 145.74118 * 11 10 8 13 13 C 1.38489 * 120.42931 * 179.97438 * 12 11 10 14 14 C 1.37683 * 120.31994 * 0.02562 * 13 12 11 15 15 C 1.40736 * 119.88625 * 0.02562 * 14 13 12 16 16 C 1.41406 * 120.21434 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00260 * 151.09850 * 16 15 14 18 18 C 1.39934 * 119.99810 * 331.11069 * 16 15 14 19 19 N 1.30829 * 119.99928 * 344.17044 * 18 16 15 20 20 Si 1.86804 * 119.99842 * 164.17463 * 18 16 15 21 21 H 1.48494 * 109.46870 * 94.97475 * 20 18 16 22 22 H 1.48500 * 109.46758 * 214.96939 * 20 18 16 23 23 H 1.48494 * 109.46972 * 334.97200 * 20 18 16 24 24 C 1.38232 * 119.94460 * 325.46193 * 11 10 8 25 25 N 1.46903 * 109.47249 * 119.99878 * 2 1 3 26 26 C 1.47013 * 110.99631 * 59.22155 * 25 2 1 27 27 C 1.53102 * 109.25550 * 177.60870 * 26 25 2 28 28 O 1.43013 * 109.25855 * 56.84538 * 27 26 25 29 29 C 1.43017 * 113.74082 * 301.33318 * 28 27 26 30 30 C 1.47010 * 110.99947 * 295.58611 * 25 2 1 31 31 H 1.08999 * 109.47177 * 300.00272 * 1 2 3 32 32 H 1.08998 * 109.46922 * 60.00384 * 1 2 3 33 33 H 1.08995 * 109.47038 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46953 * 185.36586 * 6 4 2 35 35 H 1.08996 * 109.47254 * 305.36904 * 6 4 2 36 36 H 1.09008 * 109.46845 * 65.37133 * 6 4 2 37 37 H 0.96998 * 120.00397 * 25.00163 * 7 4 2 38 38 H 0.97009 * 119.99596 * 354.87132 * 10 8 7 39 39 H 1.07999 * 119.78574 * 359.97027 * 12 11 10 40 40 H 1.08000 * 119.83862 * 180.02562 * 13 12 11 41 41 H 1.08004 * 120.05432 * 179.97438 * 14 13 12 42 42 H 0.97002 * 119.99663 * 179.97438 * 19 18 16 43 43 H 1.08000 * 120.16310 * 0.02562 * 24 11 10 44 44 H 1.09002 * 109.50687 * 57.67745 * 26 25 2 45 45 H 1.08995 * 109.51110 * 297.53910 * 26 25 2 46 46 H 1.08995 * 109.50625 * 176.78447 * 27 26 25 47 47 H 1.09000 * 109.50655 * 296.86980 * 27 26 25 48 48 H 1.09001 * 109.50698 * 178.60914 * 29 28 27 49 49 H 1.09004 * 109.50049 * 298.73194 * 29 28 27 50 50 H 1.09001 * 109.50588 * 62.45656 * 30 25 2 51 51 H 1.09002 * 109.54055 * 302.34411 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 1 1.6044 -1.7194 -1.2958 6 6 3.5647 -0.8326 -1.1872 7 7 1.6539 0.0362 -2.4423 8 6 1.5271 -0.5923 -3.6278 9 8 1.7336 -1.7879 -3.7072 10 7 1.1714 0.1044 -4.7253 11 6 1.1440 -0.5247 -5.9752 12 6 0.1882 -0.1553 -6.9187 13 6 0.1524 -0.7709 -8.1588 14 6 1.0617 -1.7560 -8.4723 15 6 2.0325 -2.1404 -7.5286 16 6 2.9694 -3.1517 -7.8432 17 1 3.9475 -3.1431 -7.3852 18 6 2.6294 -4.1636 -8.7480 19 7 1.3759 -4.3636 -9.0648 20 14 3.9653 -5.2288 -9.5032 21 1 4.1121 -6.4753 -8.7097 22 1 3.5944 -5.5718 -10.8996 23 1 5.2511 -4.4859 -9.5007 24 6 2.0691 -1.5076 -6.2734 25 7 2.0197 -0.6925 1.1995 26 6 1.5331 -2.0791 1.2427 27 6 2.1139 -2.7798 2.4739 28 8 1.7576 -2.0440 3.6473 29 6 2.2162 -0.6894 3.6389 30 6 1.6365 0.0324 2.4196 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 3.9360 -1.2599 -2.1186 35 1 3.9958 0.1583 -1.0447 36 1 3.8484 -1.4755 -0.3539 37 1 1.4894 0.9900 -2.3791 38 1 0.9343 1.0420 -4.6489 39 1 -0.5295 0.6160 -6.6817 40 1 -0.5925 -0.4767 -8.8834 41 1 1.0296 -2.2335 -9.4406 42 1 1.1403 -5.0648 -9.6923 43 1 2.8131 -1.7918 -5.5440 44 1 1.8500 -2.6043 0.3417 45 1 0.4448 -2.0813 1.3024 46 1 1.7109 -3.7902 2.5415 47 1 3.1996 -2.8259 2.3881 48 1 1.8873 -0.1881 4.5492 49 1 3.3049 -0.6741 3.5874 50 1 0.5498 0.0641 2.4981 51 1 2.0282 1.0488 2.3781 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455922015.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:45 Heat of formation + Delta-G solvation = -41.551578 kcal Electronic energy + Delta-G solvation = -30848.707249 eV Core-core repulsion = 26748.058658 eV Total energy + Delta-G solvation = -4100.648592 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.53425 -39.73166 -37.82118 -36.95487 -34.73209 -34.22953 -32.99568 -31.60198 -31.02627 -29.84001 -29.76026 -27.75394 -26.79910 -25.23131 -24.47075 -23.88127 -22.11095 -21.08342 -20.78050 -20.09480 -19.73023 -18.09280 -17.57373 -16.90835 -16.42154 -16.02853 -15.49043 -15.36930 -15.17853 -15.09803 -14.93116 -14.66361 -14.44139 -14.13112 -14.04293 -13.57483 -13.51272 -13.05835 -12.84761 -12.59730 -12.42931 -12.33919 -12.07727 -11.98695 -11.75458 -11.67103 -11.49815 -11.42205 -11.27070 -11.04241 -10.85904 -10.63443 -10.61700 -10.47946 -10.11471 -9.99412 -9.68975 -9.52396 -9.16123 -8.92601 -8.85165 -8.65922 -7.36302 -6.82087 -6.65427 -4.27794 2.75250 2.85781 3.00519 3.13282 3.18183 3.25032 3.48863 3.61183 3.76813 4.02178 4.31399 4.53851 4.58410 4.62404 4.71973 4.75897 4.81673 4.84703 4.93620 4.99369 5.18626 5.29514 5.31473 5.36245 5.42935 5.52224 5.57945 5.60939 5.64857 5.75711 5.88372 5.89771 6.03792 6.26768 6.34810 6.43241 6.54260 6.60773 6.72694 6.81583 6.83489 6.84547 7.08916 7.14147 7.28120 7.39848 7.73994 7.87225 8.02779 8.14984 8.30316 8.48925 8.71460 8.95648 9.02896 9.10693 10.30839 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015508 B = 0.002252 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.084253 B =12432.015559 C =13640.512180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.076 3.924 3 H 0.088 0.912 4 C 0.169 3.831 5 H 0.088 0.912 6 C -0.151 4.151 7 N -0.746 5.746 8 C 0.699 3.301 9 O -0.562 6.562 10 N -0.683 5.683 11 C 0.170 3.830 12 C -0.262 4.262 13 C -0.092 4.092 14 C -0.171 4.171 15 C 0.122 3.878 16 C -0.461 4.461 17 H 0.076 0.924 18 C 0.076 3.924 19 N -0.798 5.798 20 Si 0.907 3.093 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.261 1.261 24 C -0.207 4.207 25 N -0.521 5.521 26 C 0.006 3.994 27 C 0.064 3.936 28 O -0.387 6.387 29 C 0.064 3.936 30 C 0.016 3.984 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.390 0.610 38 H 0.393 0.607 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.279 0.721 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.049 0.951 46 H 0.098 0.902 47 H 0.061 0.939 48 H 0.096 0.904 49 H 0.059 0.941 50 H 0.047 0.953 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.060 9.982 20.583 22.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.033 4.033 3 H 0.106 0.894 4 C 0.064 3.936 5 H 0.106 0.894 6 C -0.210 4.210 7 N -0.403 5.403 8 C 0.399 3.601 9 O -0.436 6.436 10 N -0.329 5.329 11 C 0.077 3.923 12 C -0.284 4.284 13 C -0.111 4.111 14 C -0.190 4.190 15 C 0.119 3.881 16 C -0.490 4.490 17 H 0.095 0.905 18 C -0.141 4.141 19 N -0.423 5.423 20 Si 0.731 3.269 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.185 1.185 24 C -0.228 4.228 25 N -0.246 5.246 26 C -0.122 4.122 27 C -0.013 4.013 28 O -0.306 6.306 29 C -0.013 4.013 30 C -0.112 4.112 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.223 0.777 38 H 0.226 0.774 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.132 0.868 42 H 0.089 0.911 43 H 0.125 0.875 44 H 0.112 0.888 45 H 0.067 0.933 46 H 0.116 0.884 47 H 0.079 0.921 48 H 0.114 0.886 49 H 0.078 0.922 50 H 0.065 0.935 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.541 8.591 20.542 22.273 hybrid contribution -0.618 0.605 -0.512 1.004 sum -0.077 9.195 20.030 22.040 Atomic orbital electron populations 1.22457 0.96845 1.02884 1.02384 1.21933 0.93199 0.98426 0.89742 0.89398 1.20679 0.95607 0.95664 0.81689 0.89449 1.22054 0.94619 1.01921 1.02409 1.45125 1.76276 1.11403 1.07505 1.15941 0.78604 0.85490 0.80038 1.91002 1.55788 1.12672 1.84185 1.42596 1.71404 1.13060 1.05839 1.17218 0.96227 0.96515 0.82307 1.20008 1.02959 1.08642 0.96771 1.20434 0.98416 0.97106 0.95153 1.21242 0.99048 0.98629 1.00131 1.17487 0.91307 0.90168 0.89132 1.19508 1.00525 1.07272 1.21746 0.90544 1.25866 0.95851 0.97457 0.94914 1.69835 1.17607 1.27825 1.27059 0.86328 0.81868 0.80025 0.78647 1.19645 1.20137 1.18496 1.20982 1.01846 1.02887 0.97123 1.62379 1.58794 1.02024 1.01376 1.22953 0.98954 0.89952 1.00317 1.22685 0.99884 0.95087 0.83624 1.87986 1.78652 1.23475 1.40462 1.22647 0.98903 0.82444 0.97287 1.22807 0.99413 0.98547 0.90474 0.92421 0.91472 0.91971 0.92189 0.92980 0.91121 0.77718 0.77394 0.89409 0.89084 0.86837 0.91054 0.87505 0.88777 0.93257 0.88363 0.92108 0.88622 0.92231 0.93518 0.89663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.61 8.38 37.16 0.31 -1.30 16 2 C 0.08 0.65 2.01 -67.71 -0.14 0.52 16 3 H 0.09 0.66 8.13 -51.93 -0.42 0.24 16 4 C 0.17 1.96 1.64 -67.93 -0.11 1.85 16 5 H 0.09 1.24 6.08 -51.93 -0.32 0.92 16 6 C -0.15 -1.79 9.17 37.16 0.34 -1.45 16 7 N -0.75 -9.29 4.54 -58.67 -0.27 -9.55 16 8 C 0.70 12.64 8.26 -86.92 -0.72 11.92 16 9 O -0.56 -13.05 13.76 5.28 0.07 -12.98 16 10 N -0.68 -12.19 5.34 -14.27 -0.08 -12.27 16 11 C 0.17 3.88 6.25 -83.76 -0.52 3.36 16 12 C -0.26 -5.82 9.97 -39.10 -0.39 -6.21 16 13 C -0.09 -2.17 10.02 -39.69 -0.40 -2.57 16 14 C -0.17 -4.53 8.66 -38.84 -0.34 -4.87 16 15 C 0.12 3.41 5.52 -106.85 -0.59 2.82 16 16 C -0.46 -12.84 9.04 -37.74 -0.34 -13.19 16 17 H 0.08 2.08 7.89 -52.49 -0.41 1.66 16 18 C 0.08 2.00 5.15 -17.34 -0.09 1.91 16 19 N -0.80 -21.49 11.14 55.55 0.62 -20.87 16 20 Si 0.91 19.45 29.59 -169.99 -5.03 14.42 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 24 C -0.21 -5.44 8.39 -38.68 -0.32 -5.77 16 25 N -0.52 -4.38 3.85 -226.33 -0.87 -5.25 16 26 C 0.01 0.06 4.77 -3.71 -0.02 0.04 16 27 C 0.06 0.54 7.01 37.21 0.26 0.80 16 28 O -0.39 -3.72 10.83 -35.23 -0.38 -4.10 16 29 C 0.06 0.46 7.01 37.21 0.26 0.72 16 30 C 0.02 0.11 5.30 -3.72 -0.02 0.09 16 31 H 0.06 0.44 6.56 -51.93 -0.34 0.10 16 32 H 0.07 0.59 7.75 -51.93 -0.40 0.19 16 33 H 0.06 0.62 6.44 -51.93 -0.33 0.28 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.78 7.57 -51.92 -0.39 0.39 16 37 H 0.39 3.56 8.62 -40.82 -0.35 3.21 16 38 H 0.39 5.32 8.84 -40.82 -0.36 4.96 16 39 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 41 H 0.11 3.09 6.42 -52.48 -0.34 2.75 16 42 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 43 H 0.11 2.92 6.48 -52.49 -0.34 2.58 16 44 H 0.09 0.92 6.31 -51.93 -0.33 0.60 16 45 H 0.05 0.47 6.43 -51.93 -0.33 0.14 16 46 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.05 0.35 6.54 -51.93 -0.34 0.01 16 51 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 398.39 15.07 6.00 6.00 Total: -1.00 -32.70 398.39 -10.71 -43.41 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -7.95 Total: 12.52 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -2.82 Total: -11.33 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -0.60 Total: -47.94 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.31 Total: -17.08 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.70 -10.71 -43.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455922015.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.855 kcal (2) G-P(sol) polarization free energy of solvation -32.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds