Wall clock time and date at job start Wed Apr 1 2020 04:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47622 * 2 1 4 4 C 1.53004 * 109.47390 * 239.99965 * 2 1 3 5 5 H 1.09007 * 109.46953 * 305.07432 * 4 2 1 6 6 C 1.52996 * 109.47383 * 185.06785 * 4 2 1 7 7 N 1.46499 * 109.46989 * 65.06810 * 4 2 1 8 8 C 1.34776 * 120.00092 * 205.00422 * 7 4 2 9 9 O 1.21594 * 119.99960 * 359.97438 * 8 7 4 10 10 N 1.34776 * 120.00425 * 179.97438 * 8 7 4 11 11 C 1.39954 * 120.00408 * 174.86656 * 10 8 7 12 12 C 1.39286 * 119.94787 * 145.74118 * 11 10 8 13 13 C 1.38489 * 120.42931 * 179.97438 * 12 11 10 14 14 C 1.37683 * 120.31994 * 0.02562 * 13 12 11 15 15 C 1.40736 * 119.88625 * 0.02562 * 14 13 12 16 16 C 1.41406 * 120.21434 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00260 * 151.09850 * 16 15 14 18 18 C 1.39934 * 119.99810 * 331.11069 * 16 15 14 19 19 N 1.30829 * 119.99928 * 344.17044 * 18 16 15 20 20 Si 1.86804 * 119.99842 * 164.17463 * 18 16 15 21 21 H 1.48494 * 109.46870 * 94.97475 * 20 18 16 22 22 H 1.48500 * 109.46758 * 214.96939 * 20 18 16 23 23 H 1.48494 * 109.46972 * 334.97200 * 20 18 16 24 24 C 1.38232 * 119.94460 * 325.46193 * 11 10 8 25 25 N 1.46903 * 109.47249 * 119.99878 * 2 1 3 26 26 C 1.47013 * 110.99631 * 59.22155 * 25 2 1 27 27 C 1.53102 * 109.25550 * 177.60870 * 26 25 2 28 28 O 1.43013 * 109.25855 * 56.84538 * 27 26 25 29 29 C 1.43017 * 113.74082 * 301.33318 * 28 27 26 30 30 C 1.47010 * 110.99947 * 295.58611 * 25 2 1 31 31 H 1.08999 * 109.47177 * 300.00272 * 1 2 3 32 32 H 1.08998 * 109.46922 * 60.00384 * 1 2 3 33 33 H 1.08995 * 109.47038 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46953 * 185.36586 * 6 4 2 35 35 H 1.08996 * 109.47254 * 305.36904 * 6 4 2 36 36 H 1.09008 * 109.46845 * 65.37133 * 6 4 2 37 37 H 0.96998 * 120.00397 * 25.00163 * 7 4 2 38 38 H 0.97009 * 119.99596 * 354.87132 * 10 8 7 39 39 H 1.07999 * 119.78574 * 359.97027 * 12 11 10 40 40 H 1.08000 * 119.83862 * 180.02562 * 13 12 11 41 41 H 1.08004 * 120.05432 * 179.97438 * 14 13 12 42 42 H 0.97002 * 119.99663 * 179.97438 * 19 18 16 43 43 H 1.08000 * 120.16310 * 0.02562 * 24 11 10 44 44 H 1.09002 * 109.50687 * 57.67745 * 26 25 2 45 45 H 1.08995 * 109.51110 * 297.53910 * 26 25 2 46 46 H 1.08995 * 109.50625 * 176.78447 * 27 26 25 47 47 H 1.09000 * 109.50655 * 296.86980 * 27 26 25 48 48 H 1.09001 * 109.50698 * 178.60914 * 29 28 27 49 49 H 1.09004 * 109.50049 * 298.73194 * 29 28 27 50 50 H 1.09001 * 109.50588 * 62.45656 * 30 25 2 51 51 H 1.09002 * 109.54055 * 302.34411 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 1 1.6044 -1.7194 -1.2958 6 6 3.5647 -0.8326 -1.1872 7 7 1.6539 0.0362 -2.4423 8 6 1.5271 -0.5923 -3.6278 9 8 1.7336 -1.7879 -3.7072 10 7 1.1714 0.1044 -4.7253 11 6 1.1440 -0.5247 -5.9752 12 6 0.1882 -0.1553 -6.9187 13 6 0.1524 -0.7709 -8.1588 14 6 1.0617 -1.7560 -8.4723 15 6 2.0325 -2.1404 -7.5286 16 6 2.9694 -3.1517 -7.8432 17 1 3.9475 -3.1431 -7.3852 18 6 2.6294 -4.1636 -8.7480 19 7 1.3759 -4.3636 -9.0648 20 14 3.9653 -5.2288 -9.5032 21 1 4.1121 -6.4753 -8.7097 22 1 3.5944 -5.5718 -10.8996 23 1 5.2511 -4.4859 -9.5007 24 6 2.0691 -1.5076 -6.2734 25 7 2.0197 -0.6925 1.1995 26 6 1.5331 -2.0791 1.2427 27 6 2.1139 -2.7798 2.4739 28 8 1.7576 -2.0440 3.6473 29 6 2.2162 -0.6894 3.6389 30 6 1.6365 0.0324 2.4196 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 3.9360 -1.2599 -2.1186 35 1 3.9958 0.1583 -1.0447 36 1 3.8484 -1.4755 -0.3539 37 1 1.4894 0.9900 -2.3791 38 1 0.9343 1.0420 -4.6489 39 1 -0.5295 0.6160 -6.6817 40 1 -0.5925 -0.4767 -8.8834 41 1 1.0296 -2.2335 -9.4406 42 1 1.1403 -5.0648 -9.6923 43 1 2.8131 -1.7918 -5.5440 44 1 1.8500 -2.6043 0.3417 45 1 0.4448 -2.0813 1.3024 46 1 1.7109 -3.7902 2.5415 47 1 3.1996 -2.8259 2.3881 48 1 1.8873 -0.1881 4.5492 49 1 3.3049 -0.6741 3.5874 50 1 0.5498 0.0641 2.4981 51 1 2.0282 1.0488 2.3781 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455922015.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:44 Heat of formation + Delta-G solvation = -64.533627 kcal Electronic energy + Delta-G solvation = -30849.703826 eV Core-core repulsion = 26748.058658 eV Total energy + Delta-G solvation = -4101.645168 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.65103 -40.81912 -39.28008 -38.16336 -36.19965 -35.64077 -34.81526 -32.33104 -31.96120 -31.73090 -30.78765 -29.45135 -27.49930 -27.22185 -25.16561 -24.84081 -23.46768 -22.74826 -22.06187 -21.62105 -20.57575 -19.61746 -19.23721 -17.80700 -17.48801 -17.09352 -16.91580 -16.57398 -16.46417 -16.14425 -16.04558 -15.92403 -15.71010 -15.33333 -15.06909 -14.84529 -14.73158 -14.48236 -14.34880 -13.98098 -13.62231 -13.23252 -13.20394 -13.15231 -13.12962 -12.81104 -12.75752 -12.56770 -12.49680 -12.35993 -12.22073 -12.14475 -11.97922 -11.57148 -11.54372 -11.40007 -11.29292 -11.03149 -10.70910 -10.65534 -10.14062 -9.35429 -9.34497 -8.66941 -8.59737 -6.35669 0.94067 1.03743 1.35799 1.47082 1.52296 1.63530 2.20053 2.23739 2.73250 2.76490 2.97793 3.37787 3.50799 3.74817 3.85673 3.96638 4.05720 4.11442 4.17314 4.29043 4.35192 4.41207 4.47764 4.51304 4.62052 4.64860 4.70926 4.75076 4.78957 4.85512 4.88399 4.93019 4.99928 5.02075 5.06143 5.12773 5.14235 5.19853 5.23545 5.33111 5.34490 5.54439 5.74378 5.84899 5.90027 5.96305 6.06974 6.11297 6.19762 6.20984 6.39386 6.70194 6.95716 7.02260 7.14257 7.64400 8.37462 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015508 B = 0.002252 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.084253 B =12432.015559 C =13640.512180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.088 3.912 3 H 0.113 0.887 4 C 0.170 3.830 5 H 0.058 0.942 6 C -0.142 4.142 7 N -0.718 5.718 8 C 0.696 3.304 9 O -0.618 6.618 10 N -0.670 5.670 11 C 0.178 3.822 12 C -0.249 4.249 13 C -0.091 4.091 14 C -0.195 4.195 15 C 0.090 3.910 16 C -0.505 4.505 17 H 0.064 0.936 18 C 0.035 3.965 19 N -0.830 5.830 20 Si 0.982 3.018 21 H -0.266 1.266 22 H -0.259 1.259 23 H -0.259 1.259 24 C -0.233 4.233 25 N -0.524 5.524 26 C 0.009 3.991 27 C 0.065 3.935 28 O -0.406 6.406 29 C 0.059 3.941 30 C 0.018 3.982 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.021 0.979 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.412 0.588 38 H 0.418 0.582 39 H 0.133 0.867 40 H 0.124 0.876 41 H 0.098 0.902 42 H 0.287 0.713 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.042 0.958 46 H 0.104 0.896 47 H 0.062 0.938 48 H 0.115 0.885 49 H 0.062 0.938 50 H 0.045 0.955 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.618 12.516 21.899 25.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.131 0.869 4 C 0.065 3.935 5 H 0.076 0.924 6 C -0.201 4.201 7 N -0.376 5.376 8 C 0.397 3.603 9 O -0.496 6.496 10 N -0.318 5.318 11 C 0.084 3.916 12 C -0.270 4.270 13 C -0.109 4.109 14 C -0.215 4.215 15 C 0.087 3.913 16 C -0.535 4.535 17 H 0.082 0.918 18 C -0.179 4.179 19 N -0.456 5.456 20 Si 0.802 3.198 21 H -0.191 1.191 22 H -0.183 1.183 23 H -0.183 1.183 24 C -0.255 4.255 25 N -0.249 5.249 26 C -0.119 4.119 27 C -0.011 4.011 28 O -0.325 6.325 29 C -0.017 4.017 30 C -0.110 4.110 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.040 0.960 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.249 0.751 38 H 0.256 0.744 39 H 0.151 0.849 40 H 0.142 0.858 41 H 0.116 0.884 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.060 0.940 46 H 0.122 0.878 47 H 0.080 0.920 48 H 0.133 0.867 49 H 0.080 0.920 50 H 0.063 0.937 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.157 11.222 21.916 24.622 hybrid contribution -0.482 -0.059 -0.764 0.906 sum -0.639 11.163 21.151 23.925 Atomic orbital electron populations 1.22422 0.96601 1.01926 1.03213 1.21830 0.93193 0.98932 0.88131 0.86877 1.20729 0.95401 0.94841 0.82578 0.92429 1.21958 0.94665 1.02839 1.00634 1.44839 1.74458 1.12417 1.05877 1.16152 0.78093 0.84870 0.81207 1.90984 1.57962 1.15511 1.85173 1.42318 1.71210 1.14119 1.04195 1.17262 0.94881 0.95267 0.84221 1.20453 1.02517 1.08451 0.95565 1.20825 0.97897 0.95732 0.96485 1.21206 1.00422 1.00374 0.99540 1.17833 0.92293 0.90953 0.90180 1.19709 1.00552 1.09091 1.24109 0.91762 1.26718 0.98307 0.98287 0.94622 1.69878 1.19329 1.28773 1.27657 0.85212 0.78488 0.77819 0.78252 1.19126 1.18330 1.18325 1.20923 1.03074 1.05039 0.96444 1.62386 1.58796 1.01747 1.01956 1.22862 0.98489 0.90590 0.99935 1.22692 0.99908 0.95360 0.83184 1.87963 1.79008 1.24789 1.40721 1.22843 0.99129 0.81474 0.98262 1.22879 0.99405 0.99295 0.89421 0.90820 0.91351 0.93872 0.96008 0.90987 0.90415 0.75068 0.74395 0.84908 0.85791 0.88363 0.90204 0.89928 0.90309 0.93971 0.87800 0.91990 0.86720 0.92018 0.93704 0.87516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.75 8.38 71.98 0.60 -2.15 16 2 C 0.09 1.31 2.01 44.92 0.09 1.40 16 3 H 0.11 1.21 8.13 -2.39 -0.02 1.19 16 4 C 0.17 3.84 1.64 44.99 0.07 3.91 16 5 H 0.06 1.70 6.08 -2.38 -0.01 1.69 16 6 C -0.14 -3.34 9.17 71.98 0.66 -2.68 16 7 N -0.72 -16.90 4.54 -457.80 -2.08 -18.97 16 8 C 0.70 25.13 8.26 179.05 1.48 26.61 16 9 O -0.62 -30.03 13.76 -4.01 -0.06 -30.08 16 10 N -0.67 -22.95 5.34 -317.32 -1.70 -24.64 16 11 C 0.18 8.06 6.25 38.09 0.24 8.30 16 12 C -0.25 -10.43 9.97 22.58 0.23 -10.21 16 13 C -0.09 -4.16 10.02 22.20 0.22 -3.94 16 14 C -0.20 -10.67 8.66 22.75 0.20 -10.48 16 15 C 0.09 5.29 5.52 -21.31 -0.12 5.17 16 16 C -0.50 -29.91 9.04 23.46 0.21 -29.70 16 17 H 0.06 3.78 7.89 -2.91 -0.02 3.75 16 18 C 0.03 1.88 5.15 85.25 0.44 2.32 16 19 N -0.83 -46.28 11.14 21.82 0.24 -46.04 16 20 Si 0.98 41.16 29.59 68.60 2.03 43.19 16 21 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 22 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 23 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 24 C -0.23 -12.82 8.39 22.85 0.19 -12.63 16 25 N -0.52 -7.86 3.85 -869.97 -3.35 -11.22 16 26 C 0.01 0.17 4.77 86.32 0.41 0.58 16 27 C 0.07 1.08 7.01 72.02 0.50 1.59 16 28 O -0.41 -7.32 10.83 -148.98 -1.61 -8.93 16 29 C 0.06 0.72 7.01 72.01 0.50 1.22 16 30 C 0.02 0.20 5.30 86.31 0.46 0.66 16 31 H 0.07 0.90 6.56 -2.39 -0.02 0.88 16 32 H 0.07 1.01 7.75 -2.39 -0.02 0.99 16 33 H 0.04 0.83 6.44 -2.39 -0.02 0.81 16 34 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.70 7.57 -2.38 -0.02 1.69 16 37 H 0.41 6.19 8.62 -92.71 -0.80 5.39 16 38 H 0.42 9.93 8.84 -92.70 -0.82 9.11 16 39 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 40 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 41 H 0.10 5.56 6.42 -2.91 -0.02 5.54 16 42 H 0.29 14.39 8.30 -92.71 -0.77 13.62 16 43 H 0.08 4.86 6.48 -2.91 -0.02 4.84 16 44 H 0.08 1.64 6.31 -2.39 -0.02 1.62 16 45 H 0.04 0.81 6.43 -2.39 -0.02 0.79 16 46 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.04 0.55 6.54 -2.39 -0.02 0.53 16 51 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -76.91 398.39 -0.79 -77.70 By element: Atomic # 1 Polarization: 39.68 SS G_CDS: -0.66 Total: 39.02 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: 6.39 Total: -20.03 kcal Atomic # 7 Polarization: -93.99 SS G_CDS: -6.88 Total: -100.87 kcal Atomic # 8 Polarization: -37.34 SS G_CDS: -1.67 Total: -39.01 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -76.91 -0.79 -77.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455922015.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.164 kcal (2) G-P(sol) polarization free energy of solvation -76.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds