Wall clock time and date at job start Wed Apr 1 2020 04:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47459 * 2 1 4 4 N 1.46894 * 109.47323 * 239.99553 * 2 1 3 5 5 C 1.52999 * 109.46883 * 119.99848 * 2 1 3 6 6 H 1.09001 * 109.51504 * 300.10332 * 5 2 1 7 7 C 1.53294 * 109.51432 * 179.97438 * 5 2 1 8 8 N 1.47157 * 108.38564 * 187.77594 * 7 5 2 9 9 C 1.34774 * 120.97777 * 230.51177 * 8 7 5 10 10 O 1.21586 * 120.00496 * 5.20898 * 9 8 7 11 11 N 1.34781 * 119.99838 * 185.21030 * 9 8 7 12 12 C 1.46503 * 120.00020 * 175.01515 * 11 9 8 13 13 H 1.09000 * 109.46833 * 35.00363 * 12 11 9 14 14 C 1.52995 * 109.46838 * 155.00154 * 12 11 9 15 15 C 1.50704 * 109.47346 * 295.00078 * 14 12 11 16 16 H 1.08003 * 119.99463 * 0.02562 * 15 14 12 17 17 C 1.37874 * 120.00289 * 180.02562 * 15 14 12 18 18 N 1.31509 * 120.00340 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99718 * 359.97438 * 17 15 14 20 20 H 1.48510 * 109.46913 * 90.00555 * 19 17 15 21 21 H 1.48507 * 109.47178 * 210.00128 * 19 17 15 22 22 H 1.48497 * 109.47391 * 330.00477 * 19 17 15 23 23 C 1.50700 * 109.47263 * 275.00337 * 12 11 9 24 24 C 1.38237 * 119.99779 * 320.27529 * 23 12 11 25 25 C 1.38243 * 119.99572 * 180.28183 * 24 23 12 26 26 C 1.38230 * 119.99865 * 359.46866 * 25 24 23 27 27 C 1.38232 * 120.00235 * 0.24898 * 26 25 24 28 28 C 1.38231 * 119.99850 * 140.00183 * 23 12 11 29 29 C 1.47147 * 118.03702 * 50.78287 * 8 7 5 30 30 C 1.53709 * 108.16276 * 309.15934 * 29 8 7 31 31 O 1.42963 * 109.51248 * 60.25127 * 5 2 1 32 32 H 1.09003 * 109.46916 * 300.00638 * 1 2 3 33 33 H 1.09004 * 109.46959 * 59.99917 * 1 2 3 34 34 H 1.08989 * 109.47271 * 180.02562 * 1 2 3 35 35 H 1.00908 * 111.00198 * 300.00430 * 4 2 1 36 36 H 1.00907 * 110.99802 * 63.95690 * 4 2 1 37 37 H 1.09000 * 109.67908 * 68.04800 * 7 5 2 38 38 H 1.08997 * 109.71209 * 307.51434 * 7 5 2 39 39 H 0.96998 * 119.99733 * 355.01886 * 11 9 8 40 40 H 1.08996 * 109.47294 * 55.00316 * 14 12 11 41 41 H 1.09003 * 109.46718 * 175.00357 * 14 12 11 42 42 H 0.96998 * 120.00716 * 179.97438 * 18 17 15 43 43 H 1.07993 * 120.00165 * 0.02562 * 24 23 12 44 44 H 1.07997 * 119.99746 * 179.73791 * 25 24 23 45 45 H 1.08004 * 120.00155 * 180.27968 * 26 25 24 46 46 H 1.08000 * 120.00115 * 180.02562 * 27 26 25 47 47 H 1.07997 * 120.00327 * 359.97438 * 28 23 12 48 48 H 1.09004 * 109.68247 * 68.93740 * 29 8 7 49 49 H 1.08994 * 109.68170 * 189.48744 * 29 8 7 50 50 H 1.09003 * 109.66085 * 292.57315 * 30 29 8 51 51 H 1.09001 * 109.48995 * 172.39736 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.0400 -0.7212 1.2493 6 1 1.6755 -0.2090 2.1397 7 6 3.5729 -0.7224 1.2500 8 7 4.0359 -1.5780 2.3541 9 6 4.9519 -1.1349 3.2379 10 8 5.3382 0.0168 3.1873 11 7 5.4398 -1.9686 4.1778 12 6 6.5136 -1.5207 5.0681 13 1 6.3832 -0.4616 5.2904 14 6 6.4659 -2.3245 6.3691 15 6 5.1857 -2.0175 7.1026 16 1 4.4768 -1.3193 6.6825 17 6 4.9194 -2.6280 8.3098 18 7 3.8020 -2.3605 8.9497 19 14 6.1452 -3.8361 9.0359 20 1 7.1073 -3.1060 9.9001 21 1 5.4217 -4.8486 9.8463 22 1 6.8812 -4.5141 7.9387 23 6 7.8453 -1.7326 4.3953 24 6 8.0693 -2.8756 3.6507 25 6 9.2929 -3.0726 3.0383 26 6 10.2885 -2.1217 3.1614 27 6 10.0625 -0.9760 3.9012 28 6 8.8407 -0.7814 4.5180 29 6 3.4737 -2.9336 2.4612 30 6 1.9417 -2.8228 2.4047 31 8 1.5687 -2.0709 1.2472 32 1 -0.3633 0.5140 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0275 0.0005 35 1 1.6962 -1.6481 -1.2226 36 1 1.7503 -0.1990 -2.0372 37 1 3.9407 0.2936 1.3937 38 1 3.9407 -1.1153 0.3022 39 1 5.0800 -2.8652 4.2647 40 1 6.5070 -3.3893 6.1401 41 1 7.3167 -2.0541 6.9945 42 1 3.6145 -2.7902 9.7988 43 1 7.2899 -3.6164 3.5508 44 1 9.4694 -3.9675 2.4600 45 1 11.2430 -2.2735 2.6792 46 1 10.8402 -0.2329 3.9970 47 1 8.6640 0.1138 5.0957 48 1 3.8311 -3.5457 1.6331 49 1 3.7758 -3.3826 3.4073 50 1 1.5772 -2.3186 3.2998 51 1 1.5068 -3.8206 2.3463 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591355302.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:23 Heat of formation + Delta-G solvation = -41.642955 kcal Electronic energy + Delta-G solvation = -31746.318530 eV Core-core repulsion = 27645.665976 eV Total energy + Delta-G solvation = -4100.652554 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.38980 -39.24383 -38.29509 -35.94716 -35.35364 -34.38208 -32.66708 -31.36612 -30.63566 -30.41793 -29.30109 -28.88095 -27.53917 -25.08454 -24.07003 -22.74467 -22.24684 -21.75570 -20.59737 -20.09162 -19.33136 -17.97422 -17.10876 -16.90686 -16.40528 -16.16538 -15.88773 -15.46719 -15.06491 -14.75509 -14.59572 -14.52247 -14.33590 -13.98407 -13.87912 -13.54828 -13.31236 -13.16378 -13.06471 -12.96875 -12.74604 -12.60802 -12.38615 -12.05583 -11.75835 -11.75328 -11.50315 -11.30006 -11.10938 -11.05921 -10.72287 -10.64799 -10.60788 -10.14285 -10.08621 -9.85388 -9.61100 -9.33481 -8.93832 -8.64244 -8.60779 -8.55457 -8.29413 -8.10995 -6.12175 -4.11778 1.70253 1.73481 2.91868 3.24749 3.32990 3.35211 3.61431 3.66204 4.09824 4.32588 4.36887 4.37637 4.58468 4.78632 4.94025 5.06756 5.12942 5.18620 5.19756 5.20971 5.21814 5.26527 5.30080 5.38179 5.46499 5.54144 5.60129 5.67011 5.78073 5.82741 5.84251 5.86658 6.00791 6.05240 6.13820 6.25878 6.32723 6.45531 6.61819 6.75692 6.78686 6.84753 6.89961 6.95195 7.04978 7.10076 7.24514 7.28967 7.33338 7.44754 7.64495 8.40141 8.45211 8.94264 9.07380 9.48743 11.00574 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008845 B = 0.003726 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3164.732036 B = 7512.173279 C = 9774.637082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.099 3.901 3 H 0.093 0.907 4 N -0.839 5.839 5 C 0.084 3.916 6 H 0.065 0.935 7 C 0.112 3.888 8 N -0.637 5.637 9 C 0.711 3.289 10 O -0.593 6.593 11 N -0.716 5.716 12 C 0.211 3.789 13 H 0.092 0.908 14 C -0.014 4.014 15 C -0.519 4.519 16 H 0.076 0.924 17 C 0.071 3.929 18 N -0.898 5.898 19 Si 0.874 3.126 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.265 1.265 23 C -0.077 4.077 24 C -0.107 4.107 25 C -0.125 4.125 26 C -0.134 4.134 27 C -0.123 4.123 28 C -0.107 4.107 29 C 0.079 3.921 30 C 0.051 3.949 31 O -0.377 6.377 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.348 0.652 36 H 0.338 0.662 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.395 0.605 40 H 0.022 0.978 41 H 0.030 0.970 42 H 0.264 0.736 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.114 0.886 46 H 0.117 0.883 47 H 0.122 0.878 48 H 0.073 0.927 49 H 0.090 0.910 50 H 0.059 0.941 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.497 -1.309 -18.215 18.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.014 4.014 3 H 0.111 0.889 4 N -0.369 5.369 5 C 0.025 3.975 6 H 0.083 0.917 7 C -0.012 4.012 8 N -0.376 5.376 9 C 0.413 3.587 10 O -0.472 6.472 11 N -0.370 5.370 12 C 0.105 3.895 13 H 0.110 0.890 14 C -0.051 4.051 15 C -0.557 4.557 16 H 0.094 0.906 17 C -0.131 4.131 18 N -0.537 5.537 19 Si 0.702 3.298 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.190 1.190 23 C -0.078 4.078 24 C -0.125 4.125 25 C -0.144 4.144 26 C -0.152 4.152 27 C -0.141 4.141 28 C -0.126 4.126 29 C -0.045 4.045 30 C -0.027 4.027 31 O -0.296 6.296 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.161 0.839 36 H 0.151 0.849 37 H 0.113 0.887 38 H 0.102 0.898 39 H 0.231 0.769 40 H 0.040 0.960 41 H 0.048 0.952 42 H 0.073 0.927 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.132 0.868 46 H 0.135 0.865 47 H 0.140 0.860 48 H 0.091 0.909 49 H 0.108 0.892 50 H 0.078 0.922 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.337 -0.447 -17.905 17.913 hybrid contribution -0.538 -1.201 0.681 1.482 sum -0.201 -1.648 -17.224 17.303 Atomic orbital electron populations 1.22548 0.97003 1.02746 1.01965 1.21408 0.92805 0.97657 0.89502 0.88895 1.58852 1.67077 1.07140 1.03791 1.22569 0.93870 0.83505 0.97559 0.91744 1.21993 0.93110 0.96863 0.89198 1.47260 1.44664 1.15166 1.30527 1.15817 0.78951 0.84709 0.79227 1.90860 1.64055 1.16929 1.75347 1.45178 1.39809 1.16807 1.35232 1.19828 0.80180 1.01075 0.88371 0.88953 1.19872 0.98701 0.95234 0.91324 1.21016 1.03102 1.26845 1.04715 0.90634 1.24978 0.95068 0.96365 0.96655 1.69901 1.24287 1.43508 1.15978 0.86871 0.81727 0.81578 0.79666 1.20183 1.21378 1.18968 1.20633 0.96817 0.93897 0.96483 1.20898 0.96764 0.97279 0.97584 1.21045 0.93831 0.99081 1.00395 1.21009 0.98918 0.94907 1.00349 1.21059 0.97097 0.97636 0.98286 1.21046 0.93150 0.98888 0.99479 1.22346 0.94611 0.84614 1.02966 1.23017 0.93814 0.96992 0.88863 1.87834 1.75986 1.23402 1.42377 0.92126 0.92818 0.91699 0.83856 0.84915 0.88679 0.89767 0.76874 0.95968 0.95168 0.92661 0.86693 0.86734 0.86792 0.86517 0.86000 0.90882 0.89156 0.92231 0.87814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 9.34 37.16 0.35 -1.17 16 2 C 0.10 0.91 3.24 -67.71 -0.22 0.69 16 3 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 4 N -0.84 -7.03 8.35 -4.67 -0.04 -7.07 16 5 C 0.08 0.99 2.59 -26.58 -0.07 0.92 16 6 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 7 C 0.11 1.54 5.87 -3.53 -0.02 1.52 16 8 N -0.64 -9.74 3.01 -177.75 -0.54 -10.28 16 9 C 0.71 13.57 8.27 -86.92 -0.72 12.85 16 10 O -0.59 -13.37 15.44 5.29 0.08 -13.29 16 11 N -0.72 -13.27 3.93 -59.81 -0.24 -13.51 16 12 C 0.21 4.25 2.16 -69.08 -0.15 4.10 16 13 H 0.09 2.09 7.37 -51.93 -0.38 1.71 16 14 C -0.01 -0.30 3.56 -27.88 -0.10 -0.40 16 15 C -0.52 -13.88 9.39 -34.44 -0.32 -14.20 16 16 H 0.08 2.25 7.99 -52.48 -0.42 1.83 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 18 N -0.90 -26.62 13.96 55.43 0.77 -25.85 16 19 Si 0.87 20.75 27.47 -169.99 -4.67 16.08 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 23 C -0.08 -1.39 4.91 -104.63 -0.51 -1.91 16 24 C -0.11 -1.74 9.33 -39.58 -0.37 -2.11 16 25 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 26 C -0.13 -1.84 10.05 -39.59 -0.40 -2.24 16 27 C -0.12 -1.79 10.05 -39.58 -0.40 -2.19 16 28 C -0.11 -1.81 9.67 -39.58 -0.38 -2.20 16 29 C 0.08 0.96 6.60 -3.32 -0.02 0.94 16 30 C 0.05 0.57 7.00 37.53 0.26 0.83 16 31 O -0.38 -4.37 9.13 -35.23 -0.32 -4.69 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.58 7.69 -51.94 -0.40 0.19 16 35 H 0.35 2.96 8.44 -39.29 -0.33 2.63 16 36 H 0.34 2.20 9.07 -39.29 -0.36 1.85 16 37 H 0.09 1.48 7.06 -51.93 -0.37 1.11 16 38 H 0.08 1.14 7.41 -51.93 -0.38 0.76 16 39 H 0.39 6.68 6.16 -40.82 -0.25 6.42 16 40 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 41 H 0.03 0.69 7.57 -51.93 -0.39 0.29 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.12 1.74 7.71 -52.49 -0.40 1.34 16 44 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 45 H 0.11 1.25 8.06 -52.48 -0.42 0.83 16 46 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 47 H 0.12 1.98 8.04 -52.49 -0.42 1.56 16 48 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.09 1.10 5.77 -51.93 -0.30 0.80 16 50 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 406.53 15.07 6.13 6.13 Total: -1.00 -32.57 406.53 -10.57 -43.14 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -8.18 Total: 14.22 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -3.57 Total: -4.88 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: -0.04 Total: -56.71 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.24 Total: -17.98 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.08 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.57 -10.57 -43.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591355302.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.497 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds