Wall clock time and date at job start Wed Apr 1 2020 04:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46851 * 2 1 4 4 N 1.46901 * 109.46867 * 240.00471 * 2 1 3 5 5 C 1.52997 * 109.47236 * 119.99969 * 2 1 3 6 6 H 1.08998 * 109.50948 * 60.10304 * 5 2 1 7 7 C 1.53716 * 109.44244 * 180.38548 * 5 2 1 8 8 N 1.47147 * 108.15919 * 172.37544 * 7 5 2 9 9 C 1.34786 * 120.97911 * 129.43500 * 8 7 5 10 10 O 1.21588 * 120.00188 * 4.70469 * 9 8 7 11 11 N 1.34771 * 119.99849 * 184.70376 * 9 8 7 12 12 C 1.46504 * 120.00200 * 174.91599 * 11 9 8 13 13 H 1.09006 * 109.46720 * 34.99745 * 12 11 9 14 14 C 1.52997 * 109.47311 * 154.99977 * 12 11 9 15 15 C 1.50704 * 109.47137 * 294.99828 * 14 12 11 16 16 H 1.07996 * 120.00166 * 0.02562 * 15 14 12 17 17 C 1.37872 * 119.99939 * 180.02562 * 15 14 12 18 18 N 1.31513 * 120.00192 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99946 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47002 * 90.00307 * 19 17 15 21 21 H 1.48497 * 109.46807 * 209.99884 * 19 17 15 22 22 H 1.48495 * 109.47186 * 330.00144 * 19 17 15 23 23 C 1.50702 * 109.47131 * 275.00275 * 12 11 9 24 24 C 1.38232 * 120.00164 * 139.99354 * 23 12 11 25 25 C 1.38236 * 120.00071 * 180.02562 * 24 23 12 26 26 C 1.38242 * 119.99689 * 0.02562 * 25 24 23 27 27 C 1.38231 * 120.00260 * 359.96652 * 26 25 24 28 28 C 1.38236 * 120.00049 * 0.05741 * 27 26 25 29 29 C 1.47143 * 118.04130 * 309.15908 * 8 7 5 30 30 C 1.53301 * 108.38440 * 50.78699 * 29 8 7 31 31 O 1.42955 * 109.51519 * 299.99847 * 5 2 1 32 32 H 1.09000 * 109.46528 * 299.99966 * 1 2 3 33 33 H 1.09000 * 109.46924 * 59.99404 * 1 2 3 34 34 H 1.08992 * 109.46964 * 180.02562 * 1 2 3 35 35 H 1.00905 * 110.99960 * 176.04520 * 4 2 1 36 36 H 1.00899 * 110.99644 * 299.99999 * 4 2 1 37 37 H 1.08998 * 109.83580 * 52.69313 * 7 5 2 38 38 H 1.09007 * 109.74698 * 292.00537 * 7 5 2 39 39 H 0.97001 * 120.00033 * 354.91189 * 11 9 8 40 40 H 1.09001 * 109.47176 * 55.00315 * 14 12 11 41 41 H 1.09003 * 109.47207 * 175.00428 * 14 12 11 42 42 H 0.97004 * 120.00207 * 179.97438 * 18 17 15 43 43 H 1.08000 * 120.00169 * 0.02562 * 24 23 12 44 44 H 1.07997 * 120.00002 * 179.97438 * 25 24 23 45 45 H 1.07999 * 119.99632 * 179.69445 * 26 25 24 46 46 H 1.07999 * 120.00224 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.00039 * 179.97438 * 28 27 26 48 48 H 1.09001 * 109.68547 * 170.51168 * 29 8 7 49 49 H 1.09000 * 109.68209 * 291.03047 * 29 8 7 50 50 H 1.08999 * 109.51169 * 67.62030 * 30 29 8 51 51 H 1.09000 * 109.51420 * 187.72819 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0401 -0.7212 1.2492 6 1 1.6786 -1.7495 1.2489 7 6 3.5772 -0.7124 1.2534 8 7 4.0353 -1.2449 2.5464 9 6 4.9546 -2.2289 2.6049 10 8 5.4808 -2.6308 1.5852 11 7 5.2904 -2.7674 3.7939 12 6 6.2049 -3.9106 3.8482 13 1 6.9514 -3.8165 3.0594 14 6 6.9025 -3.9416 5.2095 15 6 7.7781 -2.7235 5.3531 16 1 7.8314 -1.9994 4.5536 17 6 8.5112 -2.5334 6.5053 18 7 8.4467 -3.4153 7.4787 19 14 9.5960 -1.0231 6.6836 20 1 8.8125 0.0795 7.2964 21 1 10.7567 -1.3472 7.5512 22 1 10.0810 -0.6012 5.3450 23 6 5.4266 -5.1863 3.6534 24 6 5.9521 -6.2057 2.8817 25 6 5.2379 -7.3756 2.7026 26 6 3.9978 -7.5258 3.2949 27 6 3.4724 -6.5065 4.0667 28 6 4.1864 -5.3364 4.2454 29 6 3.4650 -0.6672 3.7736 30 6 1.9373 -0.6746 3.6468 31 8 1.5641 -0.0480 2.4171 32 1 -0.3632 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3633 -1.0276 0.0005 35 1 3.0262 -0.6500 -1.2560 36 1 1.6961 -1.6478 -1.2228 37 1 3.9416 0.3070 1.1263 38 1 3.9513 -1.3400 0.4445 39 1 4.9266 -2.3980 4.6137 40 1 6.1536 -3.9462 6.0015 41 1 7.5151 -4.8401 5.2836 42 1 8.9627 -3.2817 8.2892 43 1 6.9207 -6.0881 2.4186 44 1 5.6482 -8.1718 2.0993 45 1 3.4376 -8.4379 3.1509 46 1 2.5034 -6.6238 4.5291 47 1 3.7757 -4.5399 4.8481 48 1 3.7648 -1.2648 4.6345 49 1 3.8187 0.3565 3.8963 50 1 1.5762 -1.7030 3.6556 51 1 1.4999 -0.1278 4.4822 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591355303.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:26 Heat of formation + Delta-G solvation = -45.850301 kcal Electronic energy + Delta-G solvation = -31841.621008 eV Core-core repulsion = 27740.786010 eV Total energy + Delta-G solvation = -4100.834998 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.55328 -39.27653 -38.35313 -36.15686 -35.36310 -34.59131 -32.77741 -31.29963 -30.63488 -30.44130 -29.18994 -28.84686 -27.47619 -25.01958 -24.24990 -22.66592 -22.29746 -21.98333 -20.94483 -20.22481 -19.43975 -18.14601 -16.93647 -16.87890 -16.36181 -16.16746 -15.93147 -15.53423 -15.24107 -15.12253 -14.76176 -14.69766 -14.53472 -14.15676 -13.96441 -13.51825 -13.47813 -13.37761 -13.03748 -12.71113 -12.58597 -12.20881 -12.14766 -12.07032 -11.89516 -11.73568 -11.55119 -11.24357 -11.16618 -10.97923 -10.88693 -10.76886 -10.64393 -10.47671 -10.26840 -9.80929 -9.73916 -9.33556 -9.12947 -8.69330 -8.56816 -8.49574 -8.28819 -8.20873 -6.12457 -4.15926 1.73492 1.76131 2.74953 3.23856 3.31832 3.36327 3.42967 3.52516 4.07243 4.26640 4.29809 4.36915 4.44003 4.66842 4.76799 4.81605 4.94844 5.04880 5.21366 5.22231 5.23036 5.24057 5.26455 5.32759 5.38145 5.48874 5.52000 5.58335 5.65219 5.73843 5.86510 5.86789 5.90441 6.01296 6.10597 6.30123 6.35450 6.44833 6.56086 6.72371 6.80117 6.81560 6.88686 6.94950 7.02975 7.10535 7.15860 7.36452 7.46456 7.61298 7.84507 8.22062 8.32696 8.90167 8.95430 9.49328 10.97981 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008389 B = 0.003822 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3336.818100 B = 7323.291568 C = 9484.009537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.098 3.902 3 H 0.090 0.910 4 N -0.835 5.835 5 C 0.045 3.955 6 H 0.060 0.940 7 C 0.102 3.898 8 N -0.637 5.637 9 C 0.709 3.291 10 O -0.594 6.594 11 N -0.714 5.714 12 C 0.200 3.800 13 H 0.088 0.912 14 C 0.024 3.976 15 C -0.520 4.520 16 H 0.058 0.942 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.072 4.072 24 C -0.108 4.108 25 C -0.122 4.122 26 C -0.135 4.135 27 C -0.126 4.126 28 C -0.107 4.107 29 C 0.076 3.924 30 C 0.050 3.950 31 O -0.371 6.371 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.346 0.654 36 H 0.342 0.658 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.395 0.605 40 H 0.023 0.977 41 H 0.036 0.964 42 H 0.262 0.738 43 H 0.121 0.879 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.114 0.886 47 H 0.113 0.887 48 H 0.092 0.908 49 H 0.077 0.923 50 H 0.055 0.945 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.878 1.758 -9.273 18.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.015 4.015 3 H 0.108 0.892 4 N -0.366 5.366 5 C -0.016 4.016 6 H 0.078 0.922 7 C -0.022 4.022 8 N -0.376 5.376 9 C 0.411 3.589 10 O -0.472 6.472 11 N -0.368 5.368 12 C 0.095 3.905 13 H 0.106 0.894 14 C -0.013 4.013 15 C -0.558 4.558 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.073 4.073 24 C -0.126 4.126 25 C -0.140 4.140 26 C -0.153 4.153 27 C -0.144 4.144 28 C -0.125 4.125 29 C -0.048 4.048 30 C -0.028 4.028 31 O -0.289 6.289 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.088 0.912 38 H 0.115 0.885 39 H 0.232 0.768 40 H 0.041 0.959 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.139 0.861 44 H 0.134 0.866 45 H 0.132 0.868 46 H 0.132 0.868 47 H 0.131 0.869 48 H 0.110 0.890 49 H 0.095 0.905 50 H 0.073 0.927 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.912 2.108 -10.236 19.037 hybrid contribution 1.215 0.044 1.582 1.996 sum -14.697 2.152 -8.653 17.190 Atomic orbital electron populations 1.21723 0.93557 1.01961 1.02392 1.21392 0.96485 0.98495 0.85107 0.89150 1.59123 1.16973 1.21800 1.38662 1.23650 0.93353 0.96923 0.87721 0.92192 1.22150 0.93543 0.99880 0.86636 1.47187 1.44578 1.39444 1.06379 1.15868 0.79328 0.78924 0.84786 1.90863 1.56839 1.65447 1.34062 1.45288 1.50532 1.34684 1.06301 1.20160 0.88567 0.79062 1.02718 0.89410 1.19391 0.95305 0.98391 0.88199 1.21131 1.26050 1.06852 1.01770 0.92408 1.24982 0.96752 0.96484 0.95892 1.69957 1.41579 1.35034 1.06494 0.86598 0.80294 0.83057 0.78117 1.20703 1.21172 1.19854 1.20606 0.94823 0.96785 0.95094 1.21029 0.99962 0.93378 0.98252 1.21049 0.95198 0.97520 1.00271 1.20992 0.96341 0.98793 0.99168 1.21031 0.99684 0.94083 0.99576 1.20867 0.94828 0.97303 0.99544 1.22317 0.94271 1.00234 0.87953 1.22976 0.93894 0.98599 0.87340 1.87925 1.75534 1.52214 1.13220 0.91328 0.91856 0.93064 0.84070 0.84534 0.91173 0.88510 0.76807 0.95863 0.94608 0.92851 0.86128 0.86574 0.86842 0.86820 0.86855 0.88991 0.90473 0.92702 0.87539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.34 37.16 0.35 -0.81 16 2 C 0.10 0.88 3.21 -67.71 -0.22 0.66 16 3 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 4 N -0.84 -7.14 9.14 -4.66 -0.04 -7.18 16 5 C 0.04 0.47 2.52 -26.36 -0.07 0.40 16 6 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 7 C 0.10 1.26 5.37 -3.32 -0.02 1.25 16 8 N -0.64 -9.15 3.01 -177.75 -0.54 -9.68 16 9 C 0.71 12.95 8.27 -86.91 -0.72 12.23 16 10 O -0.59 -12.78 15.47 5.29 0.08 -12.70 16 11 N -0.71 -12.97 3.94 -59.81 -0.24 -13.20 16 12 C 0.20 4.06 2.16 -69.08 -0.15 3.91 16 13 H 0.09 1.98 7.37 -51.93 -0.38 1.60 16 14 C 0.02 0.58 4.49 -27.88 -0.13 0.46 16 15 C -0.52 -13.68 8.84 -34.44 -0.30 -13.99 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -25.32 13.29 55.43 0.74 -24.59 16 19 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.07 -1.32 4.91 -104.62 -0.51 -1.83 16 24 C -0.11 -1.86 9.67 -39.58 -0.38 -2.24 16 25 C -0.12 -1.82 10.05 -39.58 -0.40 -2.22 16 26 C -0.13 -1.89 10.05 -39.58 -0.40 -2.28 16 27 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 28 C -0.11 -1.77 9.32 -39.58 -0.37 -2.14 16 29 C 0.08 0.88 6.63 -3.54 -0.02 0.86 16 30 C 0.05 0.48 6.99 37.31 0.26 0.75 16 31 O -0.37 -4.04 9.71 -35.23 -0.34 -4.38 16 32 H 0.07 0.59 7.68 -51.93 -0.40 0.19 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.35 2.91 7.61 -39.29 -0.30 2.61 16 36 H 0.34 2.73 9.00 -39.29 -0.35 2.37 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.10 1.29 6.20 -51.93 -0.32 0.96 16 39 H 0.40 6.61 6.11 -40.82 -0.25 6.36 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.12 2.01 8.04 -52.49 -0.42 1.58 16 44 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 45 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 46 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 47 H 0.11 1.76 7.72 -52.49 -0.41 1.35 16 48 H 0.09 1.03 5.66 -51.93 -0.29 0.74 16 49 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 50 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 409.79 15.07 6.18 6.18 Total: -1.00 -31.64 409.79 -10.92 -42.56 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -8.16 Total: 12.74 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -3.57 Total: -5.69 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.08 Total: -54.65 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.26 Total: -17.08 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.64 -10.92 -42.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591355303.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.287 kcal (2) G-P(sol) polarization free energy of solvation -31.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds