Wall clock time and date at job start Wed Apr 1 2020 04:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46851 * 2 1 4 4 N 1.46901 * 109.46867 * 240.00471 * 2 1 3 5 5 C 1.52997 * 109.47236 * 119.99969 * 2 1 3 6 6 H 1.08998 * 109.50948 * 60.10304 * 5 2 1 7 7 C 1.53716 * 109.44244 * 180.38548 * 5 2 1 8 8 N 1.47147 * 108.15919 * 172.37544 * 7 5 2 9 9 C 1.34786 * 120.97911 * 129.43500 * 8 7 5 10 10 O 1.21588 * 120.00188 * 4.70469 * 9 8 7 11 11 N 1.34771 * 119.99849 * 184.70376 * 9 8 7 12 12 C 1.46504 * 120.00200 * 174.91599 * 11 9 8 13 13 H 1.09006 * 109.46720 * 34.99745 * 12 11 9 14 14 C 1.52997 * 109.47311 * 154.99977 * 12 11 9 15 15 C 1.50704 * 109.47137 * 294.99828 * 14 12 11 16 16 H 1.07996 * 120.00166 * 0.02562 * 15 14 12 17 17 C 1.37872 * 119.99939 * 180.02562 * 15 14 12 18 18 N 1.31513 * 120.00192 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99946 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47002 * 90.00307 * 19 17 15 21 21 H 1.48497 * 109.46807 * 209.99884 * 19 17 15 22 22 H 1.48495 * 109.47186 * 330.00144 * 19 17 15 23 23 C 1.50702 * 109.47131 * 275.00275 * 12 11 9 24 24 C 1.38232 * 120.00164 * 139.99354 * 23 12 11 25 25 C 1.38236 * 120.00071 * 180.02562 * 24 23 12 26 26 C 1.38242 * 119.99689 * 0.02562 * 25 24 23 27 27 C 1.38231 * 120.00260 * 359.96652 * 26 25 24 28 28 C 1.38236 * 120.00049 * 0.05741 * 27 26 25 29 29 C 1.47143 * 118.04130 * 309.15908 * 8 7 5 30 30 C 1.53301 * 108.38440 * 50.78699 * 29 8 7 31 31 O 1.42955 * 109.51519 * 299.99847 * 5 2 1 32 32 H 1.09000 * 109.46528 * 299.99966 * 1 2 3 33 33 H 1.09000 * 109.46924 * 59.99404 * 1 2 3 34 34 H 1.08992 * 109.46964 * 180.02562 * 1 2 3 35 35 H 1.00905 * 110.99960 * 176.04520 * 4 2 1 36 36 H 1.00899 * 110.99644 * 299.99999 * 4 2 1 37 37 H 1.08998 * 109.83580 * 52.69313 * 7 5 2 38 38 H 1.09007 * 109.74698 * 292.00537 * 7 5 2 39 39 H 0.97001 * 120.00033 * 354.91189 * 11 9 8 40 40 H 1.09001 * 109.47176 * 55.00315 * 14 12 11 41 41 H 1.09003 * 109.47207 * 175.00428 * 14 12 11 42 42 H 0.97004 * 120.00207 * 179.97438 * 18 17 15 43 43 H 1.08000 * 120.00169 * 0.02562 * 24 23 12 44 44 H 1.07997 * 120.00002 * 179.97438 * 25 24 23 45 45 H 1.07999 * 119.99632 * 179.69445 * 26 25 24 46 46 H 1.07999 * 120.00224 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.00039 * 179.97438 * 28 27 26 48 48 H 1.09001 * 109.68547 * 170.51168 * 29 8 7 49 49 H 1.09000 * 109.68209 * 291.03047 * 29 8 7 50 50 H 1.08999 * 109.51169 * 67.62030 * 30 29 8 51 51 H 1.09000 * 109.51420 * 187.72819 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0401 -0.7212 1.2492 6 1 1.6786 -1.7495 1.2489 7 6 3.5772 -0.7124 1.2534 8 7 4.0353 -1.2449 2.5464 9 6 4.9546 -2.2289 2.6049 10 8 5.4808 -2.6308 1.5852 11 7 5.2904 -2.7674 3.7939 12 6 6.2049 -3.9106 3.8482 13 1 6.9514 -3.8165 3.0594 14 6 6.9025 -3.9416 5.2095 15 6 7.7781 -2.7235 5.3531 16 1 7.8314 -1.9994 4.5536 17 6 8.5112 -2.5334 6.5053 18 7 8.4467 -3.4153 7.4787 19 14 9.5960 -1.0231 6.6836 20 1 8.8125 0.0795 7.2964 21 1 10.7567 -1.3472 7.5512 22 1 10.0810 -0.6012 5.3450 23 6 5.4266 -5.1863 3.6534 24 6 5.9521 -6.2057 2.8817 25 6 5.2379 -7.3756 2.7026 26 6 3.9978 -7.5258 3.2949 27 6 3.4724 -6.5065 4.0667 28 6 4.1864 -5.3364 4.2454 29 6 3.4650 -0.6672 3.7736 30 6 1.9373 -0.6746 3.6468 31 8 1.5641 -0.0480 2.4171 32 1 -0.3632 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3633 -1.0276 0.0005 35 1 3.0262 -0.6500 -1.2560 36 1 1.6961 -1.6478 -1.2228 37 1 3.9416 0.3070 1.1263 38 1 3.9513 -1.3400 0.4445 39 1 4.9266 -2.3980 4.6137 40 1 6.1536 -3.9462 6.0015 41 1 7.5151 -4.8401 5.2836 42 1 8.9627 -3.2817 8.2892 43 1 6.9207 -6.0881 2.4186 44 1 5.6482 -8.1718 2.0993 45 1 3.4376 -8.4379 3.1509 46 1 2.5034 -6.6238 4.5291 47 1 3.7757 -4.5399 4.8481 48 1 3.7648 -1.2648 4.6345 49 1 3.8187 0.3565 3.8963 50 1 1.5762 -1.7030 3.6556 51 1 1.4999 -0.1278 4.4822 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591355303.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:25 Heat of formation + Delta-G solvation = -66.282184 kcal Electronic energy + Delta-G solvation = -31842.507001 eV Core-core repulsion = 27740.786010 eV Total energy + Delta-G solvation = -4101.720991 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.77185 -40.45293 -39.55469 -36.97317 -36.90949 -35.77888 -34.75203 -32.60457 -31.74860 -31.52607 -30.57760 -29.85631 -28.60637 -26.67941 -25.24271 -23.84340 -23.74509 -23.30061 -21.77192 -21.56899 -20.80219 -19.41274 -18.62258 -17.87311 -17.70678 -17.42150 -16.94124 -16.66108 -16.50735 -16.33493 -16.02839 -16.00492 -15.79628 -15.26289 -14.93754 -14.87372 -14.67059 -14.35766 -14.24735 -14.20080 -14.04041 -13.70114 -13.46830 -13.18156 -12.92999 -12.81764 -12.70185 -12.65223 -12.52601 -12.46854 -12.17829 -11.98190 -11.90720 -11.81900 -11.60874 -11.36582 -11.30617 -11.13501 -10.61200 -10.15364 -9.85375 -9.78065 -9.57473 -9.45824 -8.22806 -6.32951 0.48371 0.53741 1.36199 1.38916 1.49019 1.51676 2.08947 2.37514 2.61730 2.81450 3.01123 3.12286 3.48805 3.61451 3.80842 3.86148 3.95767 3.96936 4.00458 4.06387 4.18599 4.21980 4.29833 4.36509 4.41348 4.46022 4.52502 4.62826 4.65127 4.71101 4.74305 4.76742 4.84724 4.99484 5.09997 5.15047 5.17431 5.24126 5.32937 5.35974 5.39650 5.58725 5.58991 5.62152 5.74005 5.77835 5.95216 5.96822 6.13764 6.17346 6.18370 6.42371 6.79156 6.92492 7.36003 7.51900 8.87729 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008389 B = 0.003822 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3336.818100 B = 7323.291568 C = 9484.009537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.103 3.897 3 H 0.090 0.910 4 N -0.835 5.835 5 C 0.057 3.943 6 H 0.054 0.946 7 C 0.099 3.901 8 N -0.632 5.632 9 C 0.705 3.295 10 O -0.632 6.632 11 N -0.710 5.710 12 C 0.217 3.783 13 H 0.055 0.945 14 C 0.040 3.960 15 C -0.530 4.530 16 H 0.049 0.951 17 C 0.014 3.986 18 N -0.924 5.924 19 Si 0.955 3.045 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.276 1.276 23 C -0.098 4.098 24 C -0.133 4.133 25 C -0.123 4.123 26 C -0.128 4.128 27 C -0.124 4.124 28 C -0.119 4.119 29 C 0.070 3.930 30 C 0.054 3.946 31 O -0.375 6.375 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.346 0.654 36 H 0.346 0.654 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.402 0.598 40 H 0.013 0.987 41 H 0.006 0.994 42 H 0.265 0.735 43 H 0.111 0.889 44 H 0.144 0.856 45 H 0.152 0.848 46 H 0.146 0.854 47 H 0.118 0.882 48 H 0.093 0.907 49 H 0.084 0.916 50 H 0.055 0.945 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.098 1.984 -9.243 20.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.010 4.010 3 H 0.108 0.892 4 N -0.366 5.366 5 C -0.004 4.004 6 H 0.072 0.928 7 C -0.024 4.024 8 N -0.370 5.370 9 C 0.407 3.593 10 O -0.514 6.514 11 N -0.364 5.364 12 C 0.111 3.889 13 H 0.073 0.927 14 C 0.002 3.998 15 C -0.568 4.568 16 H 0.067 0.933 17 C -0.185 4.185 18 N -0.563 5.563 19 Si 0.780 3.220 20 H -0.193 1.193 21 H -0.208 1.208 22 H -0.201 1.201 23 C -0.100 4.100 24 C -0.152 4.152 25 C -0.140 4.140 26 C -0.146 4.146 27 C -0.142 4.142 28 C -0.137 4.137 29 C -0.053 4.053 30 C -0.023 4.023 31 O -0.292 6.292 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.240 0.760 40 H 0.031 0.969 41 H 0.024 0.976 42 H 0.074 0.926 43 H 0.130 0.870 44 H 0.162 0.838 45 H 0.169 0.831 46 H 0.164 0.836 47 H 0.136 0.864 48 H 0.111 0.889 49 H 0.102 0.898 50 H 0.074 0.926 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.173 2.368 -10.195 20.972 hybrid contribution 1.883 -0.069 1.550 2.440 sum -16.291 2.299 -8.646 18.585 Atomic orbital electron populations 1.21677 0.92722 1.02151 1.02562 1.21383 0.97029 0.98210 0.84385 0.89224 1.59138 1.17032 1.22113 1.38310 1.23570 0.91526 0.96864 0.88445 0.92827 1.22306 0.95105 0.99618 0.85379 1.47243 1.43364 1.38175 1.08242 1.15987 0.79776 0.79551 0.83988 1.90826 1.58460 1.66946 1.35188 1.45076 1.50156 1.34380 1.06827 1.19612 0.88727 0.81333 0.99210 0.92667 1.19118 0.94478 0.96159 0.90011 1.21351 1.26530 1.07367 1.01504 0.93288 1.25736 0.97984 0.99230 0.95578 1.70059 1.42529 1.36730 1.07014 0.85605 0.78630 0.79887 0.77855 1.19339 1.20776 1.20064 1.20466 0.95991 0.96126 0.97373 1.21174 1.00341 0.94591 0.99058 1.21387 0.95474 0.97016 1.00173 1.21468 0.95828 0.99824 0.97486 1.21427 1.00627 0.93080 0.99054 1.21014 0.94337 0.98676 0.99718 1.22568 0.95758 1.00279 0.86686 1.23079 0.92216 0.99244 0.87810 1.87933 1.75345 1.52430 1.13522 0.91375 0.91431 0.92863 0.84080 0.84123 0.90601 0.89710 0.76029 0.96897 0.97596 0.92641 0.87040 0.83841 0.83075 0.83601 0.86430 0.88900 0.89766 0.92630 0.84658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 9.34 71.98 0.67 -1.31 16 2 C 0.10 1.71 3.21 44.92 0.14 1.85 16 3 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 4 N -0.84 -13.55 9.14 -168.67 -1.54 -15.09 16 5 C 0.06 1.13 2.52 30.83 0.08 1.21 16 6 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 7 C 0.10 2.44 5.37 86.50 0.46 2.90 16 8 N -0.63 -18.17 3.01 -834.53 -2.52 -20.68 16 9 C 0.71 26.58 8.27 179.05 1.48 28.07 16 10 O -0.63 -28.50 15.47 -3.99 -0.06 -28.57 16 11 N -0.71 -26.81 3.94 -461.40 -1.82 -28.63 16 12 C 0.22 9.36 2.16 44.24 0.10 9.46 16 13 H 0.06 2.71 7.37 -2.38 -0.02 2.69 16 14 C 0.04 2.00 4.49 29.85 0.13 2.13 16 15 C -0.53 -28.85 8.84 25.60 0.23 -28.63 16 16 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 17 C 0.01 0.75 5.46 84.65 0.46 1.21 16 18 N -0.92 -53.42 13.29 21.45 0.28 -53.14 16 19 Si 0.95 43.40 29.54 68.60 2.03 45.42 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 C -0.10 -3.75 4.91 -19.86 -0.10 -3.85 16 24 C -0.13 -4.74 9.67 22.27 0.22 -4.53 16 25 C -0.12 -3.48 10.05 22.27 0.22 -3.25 16 26 C -0.13 -3.21 10.05 22.27 0.22 -2.98 16 27 C -0.12 -3.32 10.05 22.27 0.22 -3.09 16 28 C -0.12 -3.91 9.32 22.27 0.21 -3.70 16 29 C 0.07 1.54 6.63 86.36 0.57 2.11 16 30 C 0.05 0.94 6.99 72.08 0.50 1.44 16 31 O -0.37 -7.39 9.71 -148.98 -1.45 -8.84 16 32 H 0.07 1.03 7.68 -2.39 -0.02 1.01 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.35 5.69 7.61 -89.69 -0.68 5.01 16 36 H 0.35 5.21 9.00 -89.69 -0.81 4.41 16 37 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.08 2.30 6.20 -2.38 -0.01 2.29 16 39 H 0.40 13.81 6.11 -92.71 -0.57 13.25 16 40 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 43 H 0.11 4.01 8.04 -2.91 -0.02 3.98 16 44 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 45 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 46 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 47 H 0.12 3.63 7.72 -2.91 -0.02 3.60 16 48 H 0.09 2.02 5.66 -2.39 -0.01 2.01 16 49 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 50 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -70.09 409.79 -0.35 -70.44 By element: Atomic # 1 Polarization: 41.15 SS G_CDS: -1.10 Total: 40.05 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 5.83 Total: -0.96 kcal Atomic # 7 Polarization: -111.95 SS G_CDS: -5.59 Total: -117.54 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -1.51 Total: -37.41 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -70.09 -0.35 -70.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591355303.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.155 kcal (2) G-P(sol) polarization free energy of solvation -70.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds