Wall clock time and date at job start Wed Apr 1 2020 04:49:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09001 * 109.46851 * 2 1
4 4 N 1.46901 * 109.46867 * 240.00471 * 2 1 3
5 5 C 1.52997 * 109.47236 * 119.99969 * 2 1 3
6 6 H 1.08998 * 109.50948 * 60.10304 * 5 2 1
7 7 C 1.53716 * 109.44244 * 180.38548 * 5 2 1
8 8 N 1.47147 * 108.15919 * 172.37544 * 7 5 2
9 9 C 1.34786 * 120.97911 * 129.43500 * 8 7 5
10 10 O 1.21588 * 120.00188 * 4.70469 * 9 8 7
11 11 N 1.34771 * 119.99849 * 184.70376 * 9 8 7
12 12 C 1.46504 * 120.00200 * 174.91599 * 11 9 8
13 13 H 1.09006 * 109.46720 * 34.99745 * 12 11 9
14 14 C 1.52997 * 109.47311 * 154.99977 * 12 11 9
15 15 C 1.50704 * 109.47137 * 294.99828 * 14 12 11
16 16 H 1.07996 * 120.00166 * 0.02562 * 15 14 12
17 17 C 1.37872 * 119.99939 * 180.02562 * 15 14 12
18 18 N 1.31513 * 120.00192 * 0.02562 * 17 15 14
19 19 Si 1.86801 * 119.99946 * 180.02562 * 17 15 14
20 20 H 1.48498 * 109.47002 * 90.00307 * 19 17 15
21 21 H 1.48497 * 109.46807 * 209.99884 * 19 17 15
22 22 H 1.48495 * 109.47186 * 330.00144 * 19 17 15
23 23 C 1.50702 * 109.47131 * 275.00275 * 12 11 9
24 24 C 1.38232 * 120.00164 * 139.99354 * 23 12 11
25 25 C 1.38236 * 120.00071 * 180.02562 * 24 23 12
26 26 C 1.38242 * 119.99689 * 0.02562 * 25 24 23
27 27 C 1.38231 * 120.00260 * 359.96652 * 26 25 24
28 28 C 1.38236 * 120.00049 * 0.05741 * 27 26 25
29 29 C 1.47143 * 118.04130 * 309.15908 * 8 7 5
30 30 C 1.53301 * 108.38440 * 50.78699 * 29 8 7
31 31 O 1.42955 * 109.51519 * 299.99847 * 5 2 1
32 32 H 1.09000 * 109.46528 * 299.99966 * 1 2 3
33 33 H 1.09000 * 109.46924 * 59.99404 * 1 2 3
34 34 H 1.08992 * 109.46964 * 180.02562 * 1 2 3
35 35 H 1.00905 * 110.99960 * 176.04520 * 4 2 1
36 36 H 1.00899 * 110.99644 * 299.99999 * 4 2 1
37 37 H 1.08998 * 109.83580 * 52.69313 * 7 5 2
38 38 H 1.09007 * 109.74698 * 292.00537 * 7 5 2
39 39 H 0.97001 * 120.00033 * 354.91189 * 11 9 8
40 40 H 1.09001 * 109.47176 * 55.00315 * 14 12 11
41 41 H 1.09003 * 109.47207 * 175.00428 * 14 12 11
42 42 H 0.97004 * 120.00207 * 179.97438 * 18 17 15
43 43 H 1.08000 * 120.00169 * 0.02562 * 24 23 12
44 44 H 1.07997 * 120.00002 * 179.97438 * 25 24 23
45 45 H 1.07999 * 119.99632 * 179.69445 * 26 25 24
46 46 H 1.07999 * 120.00224 * 179.97438 * 27 26 25
47 47 H 1.07997 * 120.00039 * 179.97438 * 28 27 26
48 48 H 1.09001 * 109.68547 * 170.51168 * 29 8 7
49 49 H 1.09000 * 109.68209 * 291.03047 * 29 8 7
50 50 H 1.08999 * 109.51169 * 67.62030 * 30 29 8
51 51 H 1.09000 * 109.51420 * 187.72819 * 30 29 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0197 -0.6924 -1.1995
5 6 2.0401 -0.7212 1.2492
6 1 1.6786 -1.7495 1.2489
7 6 3.5772 -0.7124 1.2534
8 7 4.0353 -1.2449 2.5464
9 6 4.9546 -2.2289 2.6049
10 8 5.4808 -2.6308 1.5852
11 7 5.2904 -2.7674 3.7939
12 6 6.2049 -3.9106 3.8482
13 1 6.9514 -3.8165 3.0594
14 6 6.9025 -3.9416 5.2095
15 6 7.7781 -2.7235 5.3531
16 1 7.8314 -1.9994 4.5536
17 6 8.5112 -2.5334 6.5053
18 7 8.4467 -3.4153 7.4787
19 14 9.5960 -1.0231 6.6836
20 1 8.8125 0.0795 7.2964
21 1 10.7567 -1.3472 7.5512
22 1 10.0810 -0.6012 5.3450
23 6 5.4266 -5.1863 3.6534
24 6 5.9521 -6.2057 2.8817
25 6 5.2379 -7.3756 2.7026
26 6 3.9978 -7.5258 3.2949
27 6 3.4724 -6.5065 4.0667
28 6 4.1864 -5.3364 4.2454
29 6 3.4650 -0.6672 3.7736
30 6 1.9373 -0.6746 3.6468
31 8 1.5641 -0.0480 2.4171
32 1 -0.3632 0.5138 0.8900
33 1 -0.3633 0.5139 -0.8899
34 1 -0.3633 -1.0276 0.0005
35 1 3.0262 -0.6500 -1.2560
36 1 1.6961 -1.6478 -1.2228
37 1 3.9416 0.3070 1.1263
38 1 3.9513 -1.3400 0.4445
39 1 4.9266 -2.3980 4.6137
40 1 6.1536 -3.9462 6.0015
41 1 7.5151 -4.8401 5.2836
42 1 8.9627 -3.2817 8.2892
43 1 6.9207 -6.0881 2.4186
44 1 5.6482 -8.1718 2.0993
45 1 3.4376 -8.4379 3.1509
46 1 2.5034 -6.6238 4.5291
47 1 3.7757 -4.5399 4.8481
48 1 3.7648 -1.2648 4.6345
49 1 3.8187 0.3565 3.8963
50 1 1.5762 -1.7030 3.6556
51 1 1.4999 -0.1278 4.4822
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000591355303.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:49:25
Heat of formation + Delta-G solvation = -66.282184 kcal
Electronic energy + Delta-G solvation = -31842.507001 eV
Core-core repulsion = 27740.786010 eV
Total energy + Delta-G solvation = -4101.720991 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-41.77185 -40.45293 -39.55469 -36.97317 -36.90949 -35.77888 -34.75203 -32.60457
-31.74860 -31.52607 -30.57760 -29.85631 -28.60637 -26.67941 -25.24271 -23.84340
-23.74509 -23.30061 -21.77192 -21.56899 -20.80219 -19.41274 -18.62258 -17.87311
-17.70678 -17.42150 -16.94124 -16.66108 -16.50735 -16.33493 -16.02839 -16.00492
-15.79628 -15.26289 -14.93754 -14.87372 -14.67059 -14.35766 -14.24735 -14.20080
-14.04041 -13.70114 -13.46830 -13.18156 -12.92999 -12.81764 -12.70185 -12.65223
-12.52601 -12.46854 -12.17829 -11.98190 -11.90720 -11.81900 -11.60874 -11.36582
-11.30617 -11.13501 -10.61200 -10.15364 -9.85375 -9.78065 -9.57473 -9.45824
-8.22806 -6.32951 0.48371 0.53741 1.36199 1.38916 1.49019 1.51676
2.08947 2.37514 2.61730 2.81450 3.01123 3.12286 3.48805 3.61451
3.80842 3.86148 3.95767 3.96936 4.00458 4.06387 4.18599 4.21980
4.29833 4.36509 4.41348 4.46022 4.52502 4.62826 4.65127 4.71101
4.74305 4.76742 4.84724 4.99484 5.09997 5.15047 5.17431 5.24126
5.32937 5.35974 5.39650 5.58725 5.58991 5.62152 5.74005 5.77835
5.95216 5.96822 6.13764 6.17346 6.18370 6.42371 6.79156 6.92492
7.36003 7.51900 8.87729
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.008389 B = 0.003822 C = 0.002952
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3336.818100 B = 7323.291568 C = 9484.009537
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C 0.103 3.897
3 H 0.090 0.910
4 N -0.835 5.835
5 C 0.057 3.943
6 H 0.054 0.946
7 C 0.099 3.901
8 N -0.632 5.632
9 C 0.705 3.295
10 O -0.632 6.632
11 N -0.710 5.710
12 C 0.217 3.783
13 H 0.055 0.945
14 C 0.040 3.960
15 C -0.530 4.530
16 H 0.049 0.951
17 C 0.014 3.986
18 N -0.924 5.924
19 Si 0.955 3.045
20 H -0.268 1.268
21 H -0.282 1.282
22 H -0.276 1.276
23 C -0.098 4.098
24 C -0.133 4.133
25 C -0.123 4.123
26 C -0.128 4.128
27 C -0.124 4.124
28 C -0.119 4.119
29 C 0.070 3.930
30 C 0.054 3.946
31 O -0.375 6.375
32 H 0.067 0.933
33 H 0.067 0.933
34 H 0.052 0.948
35 H 0.346 0.654
36 H 0.346 0.654
37 H 0.076 0.924
38 H 0.085 0.915
39 H 0.402 0.598
40 H 0.013 0.987
41 H 0.006 0.994
42 H 0.265 0.735
43 H 0.111 0.889
44 H 0.144 0.856
45 H 0.152 0.848
46 H 0.146 0.854
47 H 0.118 0.882
48 H 0.093 0.907
49 H 0.084 0.916
50 H 0.055 0.945
51 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.098 1.984 -9.243 20.418
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.010 4.010
3 H 0.108 0.892
4 N -0.366 5.366
5 C -0.004 4.004
6 H 0.072 0.928
7 C -0.024 4.024
8 N -0.370 5.370
9 C 0.407 3.593
10 O -0.514 6.514
11 N -0.364 5.364
12 C 0.111 3.889
13 H 0.073 0.927
14 C 0.002 3.998
15 C -0.568 4.568
16 H 0.067 0.933
17 C -0.185 4.185
18 N -0.563 5.563
19 Si 0.780 3.220
20 H -0.193 1.193
21 H -0.208 1.208
22 H -0.201 1.201
23 C -0.100 4.100
24 C -0.152 4.152
25 C -0.140 4.140
26 C -0.146 4.146
27 C -0.142 4.142
28 C -0.137 4.137
29 C -0.053 4.053
30 C -0.023 4.023
31 O -0.292 6.292
32 H 0.086 0.914
33 H 0.086 0.914
34 H 0.071 0.929
35 H 0.159 0.841
36 H 0.159 0.841
37 H 0.094 0.906
38 H 0.103 0.897
39 H 0.240 0.760
40 H 0.031 0.969
41 H 0.024 0.976
42 H 0.074 0.926
43 H 0.130 0.870
44 H 0.162 0.838
45 H 0.169 0.831
46 H 0.164 0.836
47 H 0.136 0.864
48 H 0.111 0.889
49 H 0.102 0.898
50 H 0.074 0.926
51 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges -18.173 2.368 -10.195 20.972
hybrid contribution 1.883 -0.069 1.550 2.440
sum -16.291 2.299 -8.646 18.585
Atomic orbital electron populations
1.21677 0.92722 1.02151 1.02562 1.21383 0.97029 0.98210 0.84385
0.89224 1.59138 1.17032 1.22113 1.38310 1.23570 0.91526 0.96864
0.88445 0.92827 1.22306 0.95105 0.99618 0.85379 1.47243 1.43364
1.38175 1.08242 1.15987 0.79776 0.79551 0.83988 1.90826 1.58460
1.66946 1.35188 1.45076 1.50156 1.34380 1.06827 1.19612 0.88727
0.81333 0.99210 0.92667 1.19118 0.94478 0.96159 0.90011 1.21351
1.26530 1.07367 1.01504 0.93288 1.25736 0.97984 0.99230 0.95578
1.70059 1.42529 1.36730 1.07014 0.85605 0.78630 0.79887 0.77855
1.19339 1.20776 1.20064 1.20466 0.95991 0.96126 0.97373 1.21174
1.00341 0.94591 0.99058 1.21387 0.95474 0.97016 1.00173 1.21468
0.95828 0.99824 0.97486 1.21427 1.00627 0.93080 0.99054 1.21014
0.94337 0.98676 0.99718 1.22568 0.95758 1.00279 0.86686 1.23079
0.92216 0.99244 0.87810 1.87933 1.75345 1.52430 1.13522 0.91375
0.91431 0.92863 0.84080 0.84123 0.90601 0.89710 0.76029 0.96897
0.97596 0.92641 0.87040 0.83841 0.83075 0.83601 0.86430 0.88900
0.89766 0.92630 0.84658
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.98 9.34 71.98 0.67 -1.31 16
2 C 0.10 1.71 3.21 44.92 0.14 1.85 16
3 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16
4 N -0.84 -13.55 9.14 -168.67 -1.54 -15.09 16
5 C 0.06 1.13 2.52 30.83 0.08 1.21 16
6 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16
7 C 0.10 2.44 5.37 86.50 0.46 2.90 16
8 N -0.63 -18.17 3.01 -834.53 -2.52 -20.68 16
9 C 0.71 26.58 8.27 179.05 1.48 28.07 16
10 O -0.63 -28.50 15.47 -3.99 -0.06 -28.57 16
11 N -0.71 -26.81 3.94 -461.40 -1.82 -28.63 16
12 C 0.22 9.36 2.16 44.24 0.10 9.46 16
13 H 0.06 2.71 7.37 -2.38 -0.02 2.69 16
14 C 0.04 2.00 4.49 29.85 0.13 2.13 16
15 C -0.53 -28.85 8.84 25.60 0.23 -28.63 16
16 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16
17 C 0.01 0.75 5.46 84.65 0.46 1.21 16
18 N -0.92 -53.42 13.29 21.45 0.28 -53.14 16
19 Si 0.95 43.40 29.54 68.60 2.03 45.42 16
20 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16
21 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16
22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16
23 C -0.10 -3.75 4.91 -19.86 -0.10 -3.85 16
24 C -0.13 -4.74 9.67 22.27 0.22 -4.53 16
25 C -0.12 -3.48 10.05 22.27 0.22 -3.25 16
26 C -0.13 -3.21 10.05 22.27 0.22 -2.98 16
27 C -0.12 -3.32 10.05 22.27 0.22 -3.09 16
28 C -0.12 -3.91 9.32 22.27 0.21 -3.70 16
29 C 0.07 1.54 6.63 86.36 0.57 2.11 16
30 C 0.05 0.94 6.99 72.08 0.50 1.44 16
31 O -0.37 -7.39 9.71 -148.98 -1.45 -8.84 16
32 H 0.07 1.03 7.68 -2.39 -0.02 1.01 16
33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16
34 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16
35 H 0.35 5.69 7.61 -89.69 -0.68 5.01 16
36 H 0.35 5.21 9.00 -89.69 -0.81 4.41 16
37 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16
38 H 0.08 2.30 6.20 -2.38 -0.01 2.29 16
39 H 0.40 13.81 6.11 -92.71 -0.57 13.25 16
40 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16
41 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16
42 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16
43 H 0.11 4.01 8.04 -2.91 -0.02 3.98 16
44 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16
45 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16
46 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16
47 H 0.12 3.63 7.72 -2.91 -0.02 3.60 16
48 H 0.09 2.02 5.66 -2.39 -0.01 2.01 16
49 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16
50 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16
51 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16
Total: -1.00 -70.09 409.79 -0.35 -70.44
By element:
Atomic # 1 Polarization: 41.15 SS G_CDS: -1.10 Total: 40.05 kcal
Atomic # 6 Polarization: -6.79 SS G_CDS: 5.83 Total: -0.96 kcal
Atomic # 7 Polarization: -111.95 SS G_CDS: -5.59 Total: -117.54 kcal
Atomic # 8 Polarization: -35.90 SS G_CDS: -1.51 Total: -37.41 kcal
Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal
Total: -70.09 -0.35 -70.44 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000591355303.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.155 kcal
(2) G-P(sol) polarization free energy of solvation -70.089 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.935 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.348 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.437 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.282 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds