Wall clock time and date at job start Wed Apr 1 2020 04:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46811 * 2 1 4 4 N 1.46903 * 109.47330 * 239.99866 * 2 1 3 5 5 C 1.53000 * 109.46983 * 119.99521 * 2 1 3 6 6 H 1.08994 * 109.55553 * 300.13039 * 5 2 1 7 7 C 1.53294 * 109.51393 * 180.02562 * 5 2 1 8 8 N 1.47145 * 108.42066 * 187.79301 * 7 5 2 9 9 C 1.34776 * 120.98520 * 230.49653 * 8 7 5 10 10 O 1.21586 * 119.99757 * 174.77944 * 9 8 7 11 11 N 1.34772 * 119.99953 * 354.78223 * 9 8 7 12 12 C 1.46498 * 119.99948 * 184.97558 * 11 9 8 13 13 H 1.09002 * 109.47163 * 325.00365 * 12 11 9 14 14 C 1.53002 * 109.47223 * 204.99803 * 12 11 9 15 15 C 1.50698 * 109.46653 * 65.00217 * 14 12 11 16 16 H 1.07995 * 120.00334 * 0.02562 * 15 14 12 17 17 C 1.37884 * 119.99731 * 179.97438 * 15 14 12 18 18 N 1.31512 * 119.99642 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99810 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47030 * 60.00122 * 19 17 15 21 21 H 1.48501 * 109.46802 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47015 * 299.99960 * 19 17 15 23 23 C 1.50707 * 109.46610 * 85.00175 * 12 11 9 24 24 C 1.38230 * 120.00066 * 39.72919 * 23 12 11 25 25 C 1.38240 * 119.99611 * 179.81076 * 24 23 12 26 26 C 1.38233 * 120.00126 * 0.41249 * 25 24 23 27 27 C 1.38231 * 120.00084 * 359.81832 * 26 25 24 28 28 C 1.38234 * 120.00055 * 359.97438 * 27 26 25 29 29 C 1.47156 * 118.03060 * 50.51452 * 8 7 5 30 30 C 1.53289 * 108.38817 * 309.46967 * 29 8 7 31 31 O 1.42955 * 109.22668 * 52.29955 * 30 29 8 32 32 H 1.08994 * 109.47670 * 300.00131 * 1 2 3 33 33 H 1.09001 * 109.46950 * 60.00765 * 1 2 3 34 34 H 1.09002 * 109.46811 * 180.02562 * 1 2 3 35 35 H 1.00894 * 110.99706 * 176.04619 * 4 2 1 36 36 H 1.00897 * 110.99499 * 299.99822 * 4 2 1 37 37 H 1.09005 * 109.68313 * 68.04987 * 7 5 2 38 38 H 1.09001 * 109.68012 * 307.54127 * 7 5 2 39 39 H 0.96998 * 119.99897 * 4.98219 * 11 9 8 40 40 H 1.09000 * 109.47042 * 184.99837 * 14 12 11 41 41 H 1.08996 * 109.47390 * 305.00389 * 14 12 11 42 42 H 0.97000 * 119.99265 * 179.97438 * 18 17 15 43 43 H 1.07995 * 120.00321 * 359.97438 * 24 23 12 44 44 H 1.08000 * 119.99431 * 180.20652 * 25 24 23 45 45 H 1.08000 * 119.99560 * 179.79269 * 26 25 24 46 46 H 1.08000 * 120.00378 * 179.97438 * 27 26 25 47 47 H 1.08004 * 120.00297 * 179.97438 * 28 27 26 48 48 H 1.08998 * 109.68060 * 69.19750 * 29 8 7 49 49 H 1.09000 * 109.67984 * 189.74010 * 29 8 7 50 50 H 1.09000 * 109.51287 * 172.22895 * 30 29 8 51 51 H 1.09001 * 109.50939 * 292.32481 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.0400 -0.7211 1.2493 6 1 1.6755 -0.2097 2.1401 7 6 3.5729 -0.7212 1.2507 8 7 4.0369 -1.5768 2.3542 9 6 4.9527 -1.1334 3.2380 10 8 5.2534 -1.8180 4.1968 11 7 5.5352 0.0687 3.0591 12 6 6.6080 0.5038 3.9569 13 1 6.4110 0.1354 4.9637 14 6 6.6686 2.0325 3.9758 15 6 5.3993 2.5780 4.5777 16 1 4.6268 1.9021 4.9135 17 6 5.2246 3.9402 4.7006 18 7 6.1655 4.7632 4.2922 19 14 3.6515 4.6164 5.4473 20 1 3.5044 4.1092 6.8352 21 1 3.7103 6.1001 5.4656 22 1 2.4890 4.1776 4.6341 23 6 7.9242 -0.0452 3.4696 24 6 8.2002 -0.0789 2.1155 25 6 9.4092 -0.5789 1.6689 26 6 10.3386 -1.0529 2.5758 27 6 10.0606 -1.0235 3.9296 28 6 8.8534 -0.5196 4.3765 29 6 3.4717 -2.9310 2.4640 30 6 1.9437 -2.8235 2.4045 31 8 1.5694 -2.0713 1.2479 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8901 34 1 -0.3633 -1.0277 0.0005 35 1 3.0262 -0.6501 -1.2558 36 1 1.6962 -1.6479 -1.2226 37 1 3.9400 0.2950 1.3948 38 1 3.9408 -1.1132 0.3025 39 1 5.2440 0.6458 2.3359 40 1 7.5216 2.3549 4.5729 41 1 6.7768 2.4045 2.9571 42 1 6.0424 5.7215 4.3783 43 1 7.4725 0.2876 1.4068 44 1 9.6261 -0.6022 0.6112 45 1 11.2817 -1.4465 2.2265 46 1 10.7865 -1.3941 4.6381 47 1 8.6360 -0.4970 5.4342 48 1 3.8289 -3.5460 1.6380 49 1 3.7716 -3.3783 3.4117 50 1 1.5105 -3.8220 2.3453 51 1 1.5789 -2.3210 3.3003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591355304.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:29 Heat of formation + Delta-G solvation = -45.425236 kcal Electronic energy + Delta-G solvation = -32008.685086 eV Core-core repulsion = 27907.868519 eV Total energy + Delta-G solvation = -4100.816566 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.56592 -39.27184 -38.36141 -35.94566 -35.23359 -34.61935 -32.78053 -31.37334 -30.55922 -30.30338 -29.16438 -28.84758 -27.58044 -24.97595 -24.28708 -22.77282 -22.28733 -21.95748 -20.59957 -20.17560 -19.42838 -18.08259 -17.03952 -16.74005 -16.22244 -16.08156 -15.87620 -15.73614 -15.19154 -15.02820 -14.79512 -14.67376 -14.54570 -14.12101 -13.92442 -13.66064 -13.40794 -13.15104 -13.00398 -12.73416 -12.53390 -12.18677 -12.13350 -12.02732 -11.84270 -11.56929 -11.53826 -11.26464 -11.15320 -10.97680 -10.84837 -10.75013 -10.67080 -10.48497 -10.23924 -9.80460 -9.72604 -9.34683 -8.96180 -8.65712 -8.54475 -8.49003 -8.25222 -8.18797 -6.12337 -4.15879 1.75958 1.78783 2.76891 3.24728 3.30754 3.33316 3.44724 3.53477 4.09331 4.28931 4.36098 4.39191 4.54871 4.69169 4.84471 4.90591 5.00616 5.12761 5.18918 5.23817 5.24437 5.25442 5.31830 5.36125 5.39467 5.51506 5.55789 5.61222 5.74485 5.77609 5.89057 5.91315 5.92562 6.11160 6.11903 6.32264 6.37705 6.47109 6.57251 6.82767 6.83792 6.85044 6.90005 7.01234 7.04659 7.16819 7.30458 7.38964 7.46955 7.62343 7.84351 8.22242 8.33465 8.89750 8.96601 9.49068 10.98081 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006867 B = 0.004610 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4076.263031 B = 6072.928582 C = 8682.042488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.099 3.901 3 H 0.097 0.903 4 N -0.839 5.839 5 C 0.041 3.959 6 H 0.069 0.931 7 C 0.083 3.917 8 N -0.636 5.636 9 C 0.709 3.291 10 O -0.593 6.593 11 N -0.714 5.714 12 C 0.200 3.800 13 H 0.088 0.912 14 C 0.024 3.976 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.278 1.278 23 C -0.072 4.072 24 C -0.106 4.106 25 C -0.125 4.125 26 C -0.135 4.135 27 C -0.123 4.123 28 C -0.108 4.108 29 C 0.097 3.903 30 C 0.049 3.951 31 O -0.375 6.375 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.339 0.661 36 H 0.347 0.653 37 H 0.093 0.907 38 H 0.070 0.930 39 H 0.395 0.605 40 H 0.036 0.964 41 H 0.023 0.977 42 H 0.263 0.737 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.116 0.884 47 H 0.120 0.880 48 H 0.067 0.933 49 H 0.102 0.898 50 H 0.104 0.896 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.909 -12.902 -9.073 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.014 4.014 3 H 0.115 0.885 4 N -0.369 5.369 5 C -0.020 4.020 6 H 0.087 0.913 7 C -0.042 4.042 8 N -0.375 5.375 9 C 0.411 3.589 10 O -0.471 6.471 11 N -0.368 5.368 12 C 0.095 3.905 13 H 0.106 0.894 14 C -0.013 4.013 15 C -0.559 4.559 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.203 1.203 23 C -0.073 4.073 24 C -0.125 4.125 25 C -0.143 4.143 26 C -0.153 4.153 27 C -0.141 4.141 28 C -0.126 4.126 29 C -0.026 4.026 30 C -0.028 4.028 31 O -0.294 6.294 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.153 0.847 36 H 0.160 0.840 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.231 0.769 40 H 0.054 0.946 41 H 0.042 0.958 42 H 0.072 0.928 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.132 0.868 46 H 0.134 0.866 47 H 0.138 0.862 48 H 0.086 0.914 49 H 0.120 0.880 50 H 0.122 0.878 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.131 -12.713 -8.926 16.074 hybrid contribution -0.226 0.278 1.014 1.076 sum -4.358 -12.435 -7.912 15.369 Atomic orbital electron populations 1.21705 0.93645 1.02572 1.01883 1.21515 0.96643 0.97543 0.85680 0.88508 1.58949 1.16077 1.22171 1.39664 1.23420 0.92917 0.84374 1.01286 0.91257 1.22284 0.95009 0.96232 0.90652 1.47201 1.44823 1.15407 1.30115 1.15867 0.78786 0.82272 0.81978 1.90865 1.67218 1.58200 1.30825 1.45285 1.39035 1.16852 1.35618 1.20157 0.80141 0.97797 0.92399 0.89447 1.19388 0.98291 0.85362 0.98244 1.21078 1.02368 0.91464 1.40959 0.92539 1.24979 0.96508 0.97128 0.95435 1.69946 1.33075 1.03094 1.46843 0.86673 0.83657 0.77801 0.79971 1.20214 1.21241 1.20325 1.20599 0.97006 0.96173 0.93559 1.20871 0.96663 0.99583 0.95354 1.21036 0.94335 0.99896 0.99068 1.20991 0.99207 1.01590 0.93515 1.21043 0.97001 1.00449 0.95593 1.21026 0.93739 0.98196 0.99686 1.22059 0.93246 0.83343 1.03984 1.22994 0.94206 0.96856 0.88761 1.87849 1.75949 1.23138 1.42453 0.92329 0.91843 0.91984 0.84745 0.83997 0.88902 0.91219 0.76883 0.94610 0.95824 0.92778 0.86802 0.86782 0.86843 0.86595 0.86154 0.91447 0.88007 0.87811 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.35 37.16 0.35 -0.97 16 2 C 0.10 0.96 3.30 -67.71 -0.22 0.73 16 3 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 4 N -0.84 -7.56 9.12 -4.66 -0.04 -7.60 16 5 C 0.04 0.45 2.59 -26.58 -0.07 0.38 16 6 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 7 C 0.08 0.96 5.70 -3.54 -0.02 0.94 16 8 N -0.64 -9.06 3.02 -178.01 -0.54 -9.60 16 9 C 0.71 12.98 8.27 -86.92 -0.72 12.26 16 10 O -0.59 -12.86 15.44 5.29 0.08 -12.78 16 11 N -0.71 -13.00 3.93 -59.81 -0.24 -13.23 16 12 C 0.20 4.08 2.16 -69.08 -0.15 3.93 16 13 H 0.09 1.98 7.37 -51.93 -0.38 1.59 16 14 C 0.02 0.58 4.50 -27.88 -0.13 0.46 16 15 C -0.52 -13.62 8.84 -34.44 -0.30 -13.93 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 19 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 C -0.07 -1.34 4.91 -104.62 -0.51 -1.85 16 24 C -0.11 -1.79 9.33 -39.58 -0.37 -2.16 16 25 C -0.13 -1.86 10.05 -39.58 -0.40 -2.25 16 26 C -0.13 -1.92 10.05 -39.59 -0.40 -2.32 16 27 C -0.12 -1.85 10.05 -39.59 -0.40 -2.25 16 28 C -0.11 -1.89 9.67 -39.58 -0.38 -2.27 16 29 C 0.10 1.18 6.65 -3.53 -0.02 1.15 16 30 C 0.05 0.51 6.99 37.31 0.26 0.77 16 31 O -0.38 -4.05 9.13 -35.23 -0.32 -4.37 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.60 7.69 -51.93 -0.40 0.20 16 35 H 0.34 2.80 7.24 -39.29 -0.28 2.52 16 36 H 0.35 3.10 8.44 -39.29 -0.33 2.77 16 37 H 0.09 1.11 5.78 -51.93 -0.30 0.81 16 38 H 0.07 0.70 6.42 -51.93 -0.33 0.37 16 39 H 0.39 6.64 6.16 -40.82 -0.25 6.39 16 40 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.11 1.80 7.71 -52.49 -0.40 1.39 16 44 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 45 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 46 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 47 H 0.12 2.02 8.04 -52.48 -0.42 1.60 16 48 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.10 1.37 7.06 -51.93 -0.37 1.00 16 50 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 51 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 408.04 15.07 6.15 6.15 Total: -1.00 -31.20 408.04 -10.86 -42.06 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -8.09 Total: 13.85 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -3.58 Total: -5.82 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.08 Total: -54.92 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.24 Total: -17.15 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.20 -10.86 -42.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591355304.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.366 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds