Wall clock time and date at job start Wed Apr 1 2020 04:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.46891 * 2 1 4 4 C 1.50703 * 109.46891 * 120.00278 * 2 1 3 5 5 H 1.07997 * 120.00188 * 119.99807 * 4 2 1 6 6 C 1.37882 * 119.99578 * 299.99805 * 4 2 1 7 7 N 1.31511 * 120.00159 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99641 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47099 * 59.99914 * 8 6 4 10 10 H 1.48495 * 109.46966 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47184 * 300.00005 * 8 6 4 12 12 N 1.46495 * 109.47195 * 239.99856 * 2 1 3 13 13 C 1.46509 * 120.00093 * 300.00528 * 12 2 1 14 14 S 1.65597 * 120.00219 * 119.99768 * 12 2 1 15 15 O 1.42099 * 106.40866 * 203.54337 * 14 12 2 16 16 O 1.42098 * 106.39978 * 336.46671 * 14 12 2 17 17 N 1.65601 * 107.21431 * 90.00221 * 14 12 2 18 18 C 1.46500 * 120.00061 * 65.00403 * 17 14 12 19 19 C 1.52998 * 109.46898 * 164.99869 * 18 17 14 20 20 H 1.09002 * 110.64917 * 56.70244 * 19 18 17 21 21 C 1.54601 * 110.72769 * 293.54288 * 19 18 17 22 22 C 1.53987 * 105.14052 * 219.68842 * 21 19 18 23 23 N 1.47903 * 107.06309 * 358.77625 * 22 21 19 24 24 C 1.46891 * 111.00194 * 145.84568 * 23 22 21 25 25 C 1.53003 * 109.47510 * 55.22222 * 24 23 22 26 26 C 1.52998 * 109.47102 * 175.22690 * 24 23 22 27 27 C 1.53007 * 109.47123 * 295.22368 * 24 23 22 28 28 C 1.48532 * 105.81801 * 25.32602 * 23 22 21 29 29 H 1.08999 * 109.47583 * 300.00156 * 1 2 3 30 30 H 1.09005 * 109.47456 * 59.99994 * 1 2 3 31 31 H 1.09000 * 109.47357 * 180.02562 * 1 2 3 32 32 H 0.97006 * 119.99558 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.47281 * 89.99590 * 13 12 2 34 34 H 1.09003 * 109.46824 * 209.99653 * 13 12 2 35 35 H 1.09000 * 109.46914 * 329.99694 * 13 12 2 36 36 H 0.97005 * 120.00005 * 245.00299 * 17 14 12 37 37 H 1.08999 * 109.47215 * 284.99556 * 18 17 14 38 38 H 1.08997 * 109.46830 * 45.00150 * 18 17 14 39 39 H 1.08997 * 110.30455 * 338.60489 * 21 19 18 40 40 H 1.08998 * 110.30483 * 100.77251 * 21 19 18 41 41 H 1.09008 * 109.91776 * 118.13107 * 22 21 19 42 42 H 1.09005 * 109.91802 * 239.22552 * 22 21 19 43 43 H 1.09005 * 109.46594 * 60.00089 * 25 24 23 44 44 H 1.08992 * 109.47117 * 179.97438 * 25 24 23 45 45 H 1.08996 * 109.46868 * 300.00354 * 25 24 23 46 46 H 1.09001 * 109.47826 * 59.99940 * 26 24 23 47 47 H 1.09005 * 109.47160 * 179.97438 * 26 24 23 48 48 H 1.09004 * 109.47159 * 299.99179 * 26 24 23 49 49 H 1.08990 * 109.47009 * 52.83236 * 27 24 23 50 50 H 1.09000 * 109.47202 * 172.83468 * 27 24 23 51 51 H 1.09001 * 109.46765 * 292.83431 * 27 24 23 52 52 H 1.09000 * 110.66987 * 202.35880 * 28 23 22 53 53 H 1.08998 * 110.66390 * 79.23299 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.8074 -1.1191 4.0078 10 1 1.8277 -0.4193 5.2204 11 1 1.8278 -2.5198 4.0082 12 7 2.0183 -0.6906 -1.1961 13 6 1.6643 -2.0932 -1.4280 14 16 2.9703 0.1141 -2.2862 15 8 2.8227 -0.5646 -3.5259 16 8 2.6903 1.4972 -2.1192 17 7 4.5437 -0.1043 -1.8180 18 6 5.1356 -1.4442 -1.8415 19 6 6.6576 -1.3312 -1.7334 20 1 6.9396 -0.7853 -0.8331 21 6 7.2466 -0.6529 -2.9917 22 6 8.5440 -1.4250 -3.2948 23 7 8.6894 -2.4579 -2.2461 24 6 9.3100 -3.6741 -2.7876 25 6 10.6441 -3.3164 -3.4458 26 6 9.5523 -4.6715 -1.6530 27 6 8.3800 -4.3015 -3.8281 28 6 7.3146 -2.7343 -1.7567 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 0.7089 1.1614 3.4845 33 1 0.7375 -2.1444 -1.9993 34 1 2.4628 -2.5819 -1.9864 35 1 1.5294 -2.5969 -0.4708 36 1 5.0733 0.6549 -1.5281 37 1 4.7539 -2.0249 -1.0017 38 1 4.8736 -1.9408 -2.7757 39 1 6.5519 -0.7376 -3.8273 40 1 7.4686 0.3946 -2.7878 41 1 8.4745 -1.8978 -4.2745 42 1 9.3953 -0.7447 -3.2706 43 1 11.3067 -2.8696 -2.7045 44 1 11.1047 -4.2190 -3.8472 45 1 10.4714 -2.6059 -4.2541 46 1 8.6019 -4.9265 -1.1840 47 1 10.0124 -5.5743 -2.0549 48 1 10.2150 -4.2247 -0.9118 49 1 8.1053 -3.5510 -4.5692 50 1 8.8912 -5.1286 -4.3207 51 1 7.4809 -4.6717 -3.3354 52 1 7.3417 -3.1630 -0.7549 53 1 6.7869 -3.3948 -2.4447 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594788161.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:18 Heat of formation + Delta-G solvation = -97.576326 kcal Electronic energy + Delta-G solvation = -30824.374027 eV Core-core repulsion = 26856.739971 eV Total energy + Delta-G solvation = -3967.634056 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.91373 -38.34578 -37.88998 -37.41537 -36.89259 -34.89183 -34.48820 -30.91676 -30.77019 -30.25118 -28.26194 -27.94853 -27.23818 -26.98585 -25.49156 -23.05575 -22.59426 -21.25778 -20.24599 -19.58130 -18.74373 -18.36240 -18.24123 -17.38147 -17.06569 -16.94907 -16.52410 -15.83605 -15.37184 -15.12506 -15.05839 -14.87022 -14.83127 -14.67439 -14.44867 -14.01026 -13.74161 -13.67154 -13.43202 -13.27058 -13.19313 -13.11764 -12.98503 -12.96354 -12.92399 -12.72649 -12.66861 -12.53509 -12.48888 -12.21028 -12.17244 -12.11271 -12.08747 -11.91157 -11.78643 -11.78081 -11.53939 -11.30991 -11.18008 -10.47465 -10.38264 -9.65311 -9.23458 -8.07069 -6.21937 -0.26927 1.48673 1.48948 1.56271 2.02724 2.47598 2.63953 2.99475 3.21579 3.43662 3.67842 3.68859 3.84022 4.01070 4.05779 4.09321 4.25342 4.31665 4.41382 4.44723 4.49187 4.65917 4.70496 4.72079 4.76224 4.79774 4.81491 4.85146 4.92151 4.95306 4.97889 4.99164 5.01737 5.04229 5.05411 5.15292 5.16706 5.20370 5.26453 5.27749 5.31779 5.43278 5.49156 5.62638 5.68806 5.86208 6.01188 6.07320 6.18636 6.24773 6.30915 6.87366 7.47816 8.97388 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012098 B = 0.003249 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.896925 B = 8614.883819 C = 9994.068191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.274 3.726 3 H 0.024 0.976 4 C -0.528 4.528 5 H 0.072 0.928 6 C 0.016 3.984 7 N -0.920 5.920 8 Si 0.958 3.042 9 H -0.271 1.271 10 H -0.291 1.291 11 H -0.268 1.268 12 N -0.997 5.997 13 C 0.099 3.901 14 S 2.799 3.201 15 O -1.007 7.007 16 O -1.021 7.021 17 N -1.116 6.116 18 C 0.128 3.872 19 C -0.091 4.091 20 H 0.087 0.913 21 C -0.129 4.129 22 C 0.036 3.964 23 N -0.513 5.513 24 C 0.088 3.912 25 C -0.137 4.137 26 C -0.134 4.134 27 C -0.183 4.183 28 C 0.038 3.962 29 H 0.069 0.931 30 H 0.017 0.983 31 H 0.044 0.956 32 H 0.263 0.737 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.420 0.580 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.079 0.921 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.055 0.945 46 H 0.052 0.948 47 H 0.069 0.931 48 H 0.056 0.944 49 H 0.055 0.945 50 H 0.071 0.929 51 H 0.059 0.941 52 H 0.085 0.915 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.877 -11.139 -10.539 22.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.169 3.831 3 H 0.042 0.958 4 C -0.568 4.568 5 H 0.090 0.910 6 C -0.184 4.184 7 N -0.559 5.559 8 Si 0.784 3.216 9 H -0.196 1.196 10 H -0.217 1.217 11 H -0.193 1.193 12 N -0.838 5.838 13 C -0.047 4.047 14 S 2.808 3.192 15 O -0.990 6.990 16 O -1.005 7.005 17 N -0.878 5.878 18 C 0.001 3.999 19 C -0.111 4.111 20 H 0.105 0.895 21 C -0.167 4.167 22 C -0.092 4.092 23 N -0.238 5.238 24 C -0.002 4.002 25 C -0.194 4.194 26 C -0.192 4.192 27 C -0.241 4.241 28 C -0.090 4.090 29 H 0.088 0.912 30 H 0.036 0.964 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.254 0.746 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.088 0.912 48 H 0.075 0.925 49 H 0.074 0.926 50 H 0.090 0.910 51 H 0.078 0.922 52 H 0.103 0.897 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.740 -10.533 -10.835 22.551 hybrid contribution -0.302 -0.077 0.786 0.845 sum 16.437 -10.609 -10.049 21.994 Atomic orbital electron populations 1.21949 0.98039 1.00050 0.99862 1.18372 0.91839 0.91387 0.81459 0.95843 1.21609 1.31501 1.13127 0.90521 0.90996 1.25696 0.95219 0.95600 1.01884 1.70018 1.37507 1.24042 1.24321 0.85608 0.78733 0.78755 0.78476 1.19641 1.21741 1.19308 1.57586 1.65279 1.22446 1.38519 1.21411 1.00453 0.80553 1.02259 1.01113 0.73141 0.71924 0.73022 1.93518 1.86610 1.76314 1.42605 1.93537 1.84669 1.34991 1.87302 1.55651 1.30716 1.16321 1.85137 1.21360 0.94074 0.82352 1.02080 1.22192 0.92104 0.97311 0.99542 0.89477 1.22499 0.96515 1.00331 0.97343 1.22887 0.97662 0.94323 0.94316 1.65014 1.18205 1.08525 1.32031 1.21303 0.94883 0.89848 0.94137 1.21868 0.95424 1.01941 1.00205 1.21805 1.01850 0.97995 0.97548 1.22514 1.00486 1.01606 0.99488 1.23286 0.88774 0.95594 1.01347 0.91239 0.96361 0.93711 0.92815 0.93182 0.90601 0.90369 0.74552 0.91161 0.90506 0.91568 0.90628 0.92724 0.90258 0.92370 0.91122 0.92620 0.92899 0.91182 0.92464 0.92613 0.90991 0.92183 0.89665 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.68 8.97 71.98 0.65 -6.03 16 2 C 0.27 13.32 2.62 44.25 0.12 13.43 16 3 H 0.02 1.31 6.91 -2.39 -0.02 1.30 16 4 C -0.53 -26.37 7.99 25.60 0.20 -26.16 16 5 H 0.07 3.38 7.33 -2.91 -0.02 3.35 16 6 C 0.02 0.81 5.30 84.66 0.45 1.25 16 7 N -0.92 -50.98 11.32 21.45 0.24 -50.73 16 8 Si 0.96 40.88 29.54 68.60 2.03 42.91 16 9 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 10 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 12 N -1.00 -39.88 3.12 -520.44 -1.62 -41.51 16 13 C 0.10 3.26 9.28 127.77 1.19 4.44 16 14 S 2.80 106.50 6.09 -56.49 -0.34 106.16 16 15 O -1.01 -39.25 16.68 -128.00 -2.14 -41.38 16 16 O -1.02 -47.01 16.70 -128.00 -2.14 -49.15 16 17 N -1.12 -33.05 5.86 -187.50 -1.10 -34.15 16 18 C 0.13 3.10 5.58 86.38 0.48 3.58 16 19 C -0.09 -1.87 3.13 -9.59 -0.03 -1.90 16 20 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 21 C -0.13 -2.47 6.33 31.47 0.20 -2.27 16 22 C 0.04 0.61 5.10 86.44 0.44 1.05 16 23 N -0.51 -9.15 5.09 -833.66 -4.24 -13.40 16 24 C 0.09 1.30 0.69 3.53 0.00 1.30 16 25 C -0.14 -1.77 8.27 71.98 0.60 -1.18 16 26 C -0.13 -1.88 8.48 71.98 0.61 -1.27 16 27 C -0.18 -2.54 7.59 71.98 0.55 -1.99 16 28 C 0.04 0.70 4.92 86.65 0.43 1.13 16 29 H 0.07 3.67 6.07 -2.39 -0.01 3.65 16 30 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.04 1.97 7.67 -2.39 -0.02 1.95 16 32 H 0.26 13.96 8.31 -92.70 -0.77 13.19 16 33 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 2.06 7.79 -2.39 -0.02 2.04 16 35 H 0.08 2.61 7.02 -2.39 -0.02 2.59 16 36 H 0.42 11.42 8.65 -96.74 -0.84 10.58 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 38 H 0.08 1.80 7.68 -2.39 -0.02 1.78 16 39 H 0.07 1.35 7.80 -2.39 -0.02 1.33 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.05 0.88 5.29 -2.38 -0.01 0.87 16 42 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 44 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.05 0.72 6.77 -2.39 -0.02 0.70 16 46 H 0.05 0.78 7.15 -2.39 -0.02 0.76 16 47 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 48 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.05 0.83 6.05 -2.39 -0.01 0.81 16 50 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.06 0.87 6.37 -2.39 -0.02 0.86 16 52 H 0.09 1.57 7.72 -2.39 -0.02 1.55 16 53 H 0.06 1.08 5.45 -2.39 -0.01 1.07 16 Total: -1.00 -64.19 409.60 -3.39 -67.58 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 0.05 Total: 28.29 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: 5.87 Total: -14.61 kcal Atomic # 7 Polarization: -133.06 SS G_CDS: -6.72 Total: -139.79 kcal Atomic # 8 Polarization: -86.26 SS G_CDS: -4.27 Total: -90.53 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Atomic # 16 Polarization: 106.50 SS G_CDS: -0.34 Total: 106.16 kcal Total: -64.19 -3.39 -67.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594788161.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.999 kcal (2) G-P(sol) polarization free energy of solvation -64.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds