Wall clock time and date at job start Wed Apr 1 2020 04:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46874 * 2 1 4 4 C 1.50702 * 109.46655 * 120.00014 * 2 1 3 5 5 H 1.08004 * 119.99855 * 120.00458 * 4 2 1 6 6 C 1.37875 * 120.00081 * 300.00070 * 4 2 1 7 7 N 1.31511 * 120.00153 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00046 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47243 * 89.99635 * 8 6 4 10 10 H 1.48490 * 109.47201 * 209.99835 * 8 6 4 11 11 H 1.48500 * 109.46866 * 329.99678 * 8 6 4 12 12 N 1.46896 * 109.47106 * 239.99916 * 2 1 3 13 13 C 1.46896 * 111.00197 * 85.00148 * 12 2 1 14 14 C 1.50693 * 109.47571 * 179.97438 * 13 12 2 15 15 O 1.21292 * 119.99862 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00463 * 180.02562 * 14 13 12 17 17 C 1.39924 * 120.00186 * 185.27432 * 16 14 13 18 18 C 1.38869 * 120.07025 * 33.28936 * 17 16 14 19 19 C 1.38111 * 119.92892 * 179.72802 * 18 17 16 20 20 C 1.38282 * 120.07035 * 0.22134 * 19 18 17 21 21 C 1.50700 * 119.93023 * 180.02562 * 20 19 18 22 22 N 1.46905 * 109.47196 * 90.00419 * 21 20 19 23 23 C 1.47014 * 110.99988 * 293.63706 * 22 21 20 24 24 C 1.53098 * 109.25849 * 177.60563 * 23 22 21 25 25 O 1.43014 * 109.25991 * 56.84753 * 24 23 22 26 26 C 1.43020 * 113.73518 * 301.33195 * 25 24 23 27 27 C 1.47007 * 111.00286 * 169.99792 * 22 21 20 28 28 C 1.38279 * 120.14296 * 0.05266 * 20 19 18 29 29 C 1.38115 * 120.07157 * 359.97438 * 28 20 19 30 30 H 1.08998 * 109.47283 * 300.00206 * 1 2 3 31 31 H 1.09007 * 109.46923 * 60.00297 * 1 2 3 32 32 H 1.09000 * 109.47350 * 179.97438 * 1 2 3 33 33 H 0.97001 * 119.99876 * 180.02562 * 7 6 4 34 34 H 1.00898 * 111.00164 * 208.95551 * 12 2 1 35 35 H 1.09006 * 109.47000 * 59.99782 * 13 12 2 36 36 H 1.08996 * 109.47281 * 299.99945 * 13 12 2 37 37 H 0.97001 * 120.00106 * 5.26741 * 16 14 13 38 38 H 1.07996 * 120.03910 * 359.97438 * 18 17 16 39 39 H 1.08003 * 119.97044 * 180.25173 * 19 18 17 40 40 H 1.08997 * 109.47308 * 210.00199 * 21 20 19 41 41 H 1.09002 * 109.47367 * 330.00384 * 21 20 19 42 42 H 1.09001 * 109.50766 * 297.54158 * 23 22 21 43 43 H 1.09004 * 109.50762 * 57.66676 * 23 22 21 44 44 H 1.09004 * 109.50228 * 296.90821 * 24 23 22 45 45 H 1.09004 * 109.54064 * 176.80536 * 24 23 22 46 46 H 1.08998 * 109.50551 * 298.73369 * 26 25 24 47 47 H 1.09006 * 109.53653 * 178.62514 * 26 25 24 48 48 H 1.08998 * 109.51264 * 302.32960 * 27 22 21 49 49 H 1.09003 * 109.50428 * 62.41501 * 27 22 21 50 50 H 1.08005 * 119.96713 * 179.97438 * 28 20 19 51 51 H 1.07994 * 120.04174 * 180.02562 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3222 -1.1196 4.0080 9 1 3.6303 -0.5442 4.4120 10 1 1.3442 -0.9491 5.1122 11 1 2.4877 -2.5654 3.7122 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2225 -2.3468 14 6 2.5885 -0.5215 -3.5556 15 8 2.8688 -1.6985 -3.4699 16 7 2.7297 0.1208 -4.7321 17 6 3.0933 -0.5927 -5.8795 18 6 2.6666 -1.9034 -6.0482 19 6 3.0225 -2.6031 -7.1846 20 6 3.8067 -2.0013 -8.1516 21 6 4.1927 -2.7675 -9.3906 22 7 3.1782 -2.5575 -10.4321 23 6 1.8931 -3.1571 -10.0443 24 6 0.8518 -2.8641 -11.1277 25 8 1.3242 -3.3609 -12.3828 26 6 2.5736 -2.7976 -12.7915 27 6 3.6323 -3.0899 -11.7250 28 6 4.2379 -0.6982 -7.9840 29 6 3.8859 0.0068 -6.8497 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 0.7094 1.1617 3.4844 34 1 2.9173 -1.1205 -1.0287 35 1 2.7589 1.0462 -2.1181 36 1 1.0872 0.6163 -2.5525 37 1 2.5792 1.0777 -4.7834 38 1 2.0539 -2.3739 -5.2936 39 1 2.6877 -3.6211 -7.3184 40 1 5.1598 -2.4151 -9.7492 41 1 4.2575 -3.8298 -9.1554 42 1 2.0123 -4.2351 -9.9361 43 1 1.5632 -2.7299 -9.0973 44 1 0.6932 -1.7880 -11.1985 45 1 -0.0878 -3.3543 -10.8724 46 1 2.4651 -1.7196 -12.9107 47 1 2.8801 -3.2397 -13.7395 48 1 4.5720 -2.6138 -12.0049 49 1 3.7801 -4.1668 -11.6434 50 1 4.8506 -0.2311 -8.7409 51 1 4.2226 1.0246 -6.7195 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602866104.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:33 Heat of formation + Delta-G solvation = -39.759422 kcal Electronic energy + Delta-G solvation = -29550.015157 eV Core-core repulsion = 25449.444279 eV Total energy + Delta-G solvation = -4100.570878 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.59398 -39.93011 -38.61425 -36.35105 -35.63043 -34.55067 -32.57210 -31.67250 -31.09331 -30.94908 -29.23938 -27.78901 -25.85467 -25.05034 -24.48361 -24.04985 -23.03961 -21.47171 -20.77719 -20.24127 -19.80133 -17.90302 -17.11213 -17.00297 -16.59521 -16.19533 -15.97110 -15.73828 -15.48446 -15.36831 -14.91471 -14.64021 -14.54810 -14.38124 -14.30158 -13.75028 -13.60494 -13.35415 -13.24951 -12.84897 -12.69080 -12.50862 -12.39012 -12.05400 -11.87373 -11.80315 -11.43454 -11.33702 -11.22682 -10.97850 -10.93743 -10.80280 -10.41770 -10.28633 -10.17832 -10.10374 -10.07839 -9.55719 -9.00780 -8.88506 -8.82235 -8.51286 -8.08881 -7.37782 -6.06716 -4.12745 1.11004 1.32795 2.75286 3.06176 3.28552 3.31818 3.35275 3.40556 3.48630 3.84144 4.37546 4.38557 4.52162 4.55874 4.65584 4.74058 4.80166 4.85512 4.92506 4.93459 5.07010 5.13034 5.20938 5.22761 5.24669 5.30069 5.31541 5.35973 5.47870 5.52735 5.55770 5.59434 5.75995 5.79809 5.92281 6.14583 6.27203 6.40850 6.45717 6.51837 6.57935 6.73709 6.78095 6.96639 7.05574 7.13017 7.33820 7.45521 7.74996 7.82222 8.21025 8.27791 8.29726 8.58515 8.96642 9.53376 10.99766 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026901 B = 0.001590 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.613498 B =17610.803273 C =17773.322646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.212 3.788 3 H 0.003 0.997 4 C -0.518 4.518 5 H 0.062 0.938 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.672 5.672 13 C 0.045 3.955 14 C 0.512 3.488 15 O -0.502 6.502 16 N -0.684 5.684 17 C 0.161 3.839 18 C -0.121 4.121 19 C -0.093 4.093 20 C -0.106 4.106 21 C 0.099 3.901 22 N -0.531 5.531 23 C 0.013 3.987 24 C 0.064 3.936 25 O -0.387 6.387 26 C 0.064 3.936 27 C 0.016 3.984 28 C -0.078 4.078 29 C -0.152 4.152 30 H 0.082 0.918 31 H 0.003 0.997 32 H 0.033 0.967 33 H 0.261 0.739 34 H 0.341 0.659 35 H 0.052 0.948 36 H 0.097 0.903 37 H 0.410 0.590 38 H 0.137 0.863 39 H 0.119 0.881 40 H 0.083 0.917 41 H 0.044 0.956 42 H 0.042 0.958 43 H 0.094 0.906 44 H 0.060 0.940 45 H 0.098 0.902 46 H 0.059 0.941 47 H 0.097 0.903 48 H 0.086 0.914 49 H 0.043 0.957 50 H 0.123 0.877 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.837 -1.824 -30.140 30.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.104 3.896 3 H 0.021 0.979 4 C -0.557 4.557 5 H 0.080 0.920 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.305 5.305 13 C -0.088 4.088 14 C 0.300 3.700 15 O -0.374 6.374 16 N -0.330 5.330 17 C 0.066 3.934 18 C -0.142 4.142 19 C -0.113 4.113 20 C -0.107 4.107 21 C -0.028 4.028 22 N -0.257 5.257 23 C -0.115 4.115 24 C -0.013 4.013 25 O -0.306 6.306 26 C -0.013 4.013 27 C -0.112 4.112 28 C -0.097 4.097 29 C -0.173 4.173 30 H 0.101 0.899 31 H 0.022 0.978 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.160 0.840 35 H 0.070 0.930 36 H 0.115 0.885 37 H 0.245 0.755 38 H 0.155 0.845 39 H 0.137 0.863 40 H 0.102 0.898 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.112 0.888 44 H 0.078 0.922 45 H 0.116 0.884 46 H 0.078 0.922 47 H 0.115 0.885 48 H 0.104 0.896 49 H 0.061 0.939 50 H 0.141 0.859 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.123 -2.448 -30.161 30.540 hybrid contribution 1.290 0.044 1.412 1.913 sum 5.413 -2.404 -28.749 29.353 Atomic orbital electron populations 1.21738 0.97673 0.99596 0.99368 1.19177 0.92785 0.92328 0.85261 0.97932 1.21240 1.31545 1.12651 0.90253 0.92027 1.24907 0.94975 0.95010 0.99069 1.69888 1.36590 1.22888 1.23553 0.86489 0.78435 0.80157 0.82304 1.20743 1.21175 1.19777 1.60532 1.33463 1.31608 1.04919 1.21824 1.01412 0.95012 0.90569 1.21346 0.76555 0.88152 0.83903 1.90697 1.46565 1.15982 1.84204 1.43772 1.69839 1.12175 1.07249 1.17821 0.95582 0.92857 0.87167 1.21183 1.01047 0.93971 0.97963 1.20899 0.97633 0.99522 0.93210 1.19546 1.00587 0.95011 0.95550 1.20992 0.94839 0.97714 0.89255 1.62241 1.03241 1.57942 1.02227 1.22890 0.90496 0.97904 1.00181 1.22685 0.96365 0.99605 0.82676 1.87988 1.37603 1.67217 1.37778 1.22651 0.83264 0.98830 0.96567 1.22801 0.99321 0.98670 0.90370 1.20695 0.99162 0.93374 0.96489 1.20887 0.99823 1.01023 0.95525 0.89913 0.97775 0.94751 0.92882 0.84002 0.93033 0.88463 0.75450 0.84516 0.86256 0.89831 0.93825 0.93934 0.88820 0.92179 0.88366 0.92221 0.88506 0.89555 0.93915 0.85889 0.85766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.19 37.16 0.34 -2.72 16 2 C 0.21 5.27 2.60 -68.86 -0.18 5.09 16 3 H 0.00 0.08 7.80 -51.93 -0.40 -0.32 16 4 C -0.52 -14.21 8.59 -34.44 -0.30 -14.50 16 5 H 0.06 1.69 7.62 -52.48 -0.40 1.29 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.03 11.32 55.43 0.63 -24.40 16 8 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.67 -14.54 5.93 -109.23 -0.65 -15.19 16 13 C 0.04 0.75 5.97 -4.98 -0.03 0.72 16 14 C 0.51 8.14 7.61 -10.99 -0.08 8.06 16 15 O -0.50 -9.78 13.89 5.55 0.08 -9.70 16 16 N -0.68 -8.26 5.34 -9.86 -0.05 -8.31 16 17 C 0.16 1.99 6.28 -83.69 -0.53 1.46 16 18 C -0.12 -1.60 8.66 -39.39 -0.34 -1.95 16 19 C -0.09 -1.02 7.92 -39.61 -0.31 -1.34 16 20 C -0.11 -1.02 4.90 -104.59 -0.51 -1.53 16 21 C 0.10 0.78 5.11 -4.97 -0.03 0.75 16 22 N -0.53 -4.20 4.72 -235.75 -1.11 -5.32 16 23 C 0.01 0.11 5.27 -3.71 -0.02 0.09 16 24 C 0.06 0.49 7.01 37.21 0.26 0.75 16 25 O -0.39 -3.48 10.83 -35.23 -0.38 -3.87 16 26 C 0.06 0.42 7.01 37.21 0.26 0.68 16 27 C 0.02 0.11 5.64 -3.72 -0.02 0.09 16 28 C -0.08 -0.73 9.69 -39.61 -0.38 -1.12 16 29 C -0.15 -1.54 9.96 -39.39 -0.39 -1.93 16 30 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 31 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 32 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.34 7.61 7.92 -39.29 -0.31 7.29 16 35 H 0.05 0.80 8.06 -51.93 -0.42 0.38 16 36 H 0.10 1.53 7.44 -51.93 -0.39 1.14 16 37 H 0.41 3.58 8.82 -40.82 -0.36 3.22 16 38 H 0.14 2.09 6.41 -52.49 -0.34 1.76 16 39 H 0.12 1.15 8.00 -52.48 -0.42 0.73 16 40 H 0.08 0.56 7.98 -51.93 -0.41 0.14 16 41 H 0.04 0.34 8.06 -51.93 -0.42 -0.07 16 42 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 0.80 6.01 -51.93 -0.31 0.49 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.09 0.43 8.09 -51.93 -0.42 0.01 16 49 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 50 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 51 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 406.75 15.07 6.13 6.13 Total: -1.00 -31.95 406.75 -10.98 -42.93 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -8.24 Total: 7.26 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -2.36 Total: -5.78 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -1.18 Total: -53.22 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.30 Total: -13.57 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.95 -10.98 -42.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602866104.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.170 kcal (2) G-P(sol) polarization free energy of solvation -31.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds