Wall clock time and date at job start Wed Apr 1 2020 04:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46874 * 2 1 4 4 C 1.50702 * 109.46655 * 120.00014 * 2 1 3 5 5 H 1.08004 * 119.99855 * 120.00458 * 4 2 1 6 6 C 1.37875 * 120.00081 * 300.00070 * 4 2 1 7 7 N 1.31511 * 120.00153 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00046 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47243 * 89.99635 * 8 6 4 10 10 H 1.48490 * 109.47201 * 209.99835 * 8 6 4 11 11 H 1.48500 * 109.46866 * 329.99678 * 8 6 4 12 12 N 1.46896 * 109.47106 * 239.99916 * 2 1 3 13 13 C 1.46896 * 111.00197 * 85.00148 * 12 2 1 14 14 C 1.50693 * 109.47571 * 179.97438 * 13 12 2 15 15 O 1.21292 * 119.99862 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00463 * 180.02562 * 14 13 12 17 17 C 1.39924 * 120.00186 * 185.27432 * 16 14 13 18 18 C 1.38869 * 120.07025 * 33.28936 * 17 16 14 19 19 C 1.38111 * 119.92892 * 179.72802 * 18 17 16 20 20 C 1.38282 * 120.07035 * 0.22134 * 19 18 17 21 21 C 1.50700 * 119.93023 * 180.02562 * 20 19 18 22 22 N 1.46905 * 109.47196 * 90.00419 * 21 20 19 23 23 C 1.47014 * 110.99988 * 293.63706 * 22 21 20 24 24 C 1.53098 * 109.25849 * 177.60563 * 23 22 21 25 25 O 1.43014 * 109.25991 * 56.84753 * 24 23 22 26 26 C 1.43020 * 113.73518 * 301.33195 * 25 24 23 27 27 C 1.47007 * 111.00286 * 169.99792 * 22 21 20 28 28 C 1.38279 * 120.14296 * 0.05266 * 20 19 18 29 29 C 1.38115 * 120.07157 * 359.97438 * 28 20 19 30 30 H 1.08998 * 109.47283 * 300.00206 * 1 2 3 31 31 H 1.09007 * 109.46923 * 60.00297 * 1 2 3 32 32 H 1.09000 * 109.47350 * 179.97438 * 1 2 3 33 33 H 0.97001 * 119.99876 * 180.02562 * 7 6 4 34 34 H 1.00898 * 111.00164 * 208.95551 * 12 2 1 35 35 H 1.09006 * 109.47000 * 59.99782 * 13 12 2 36 36 H 1.08996 * 109.47281 * 299.99945 * 13 12 2 37 37 H 0.97001 * 120.00106 * 5.26741 * 16 14 13 38 38 H 1.07996 * 120.03910 * 359.97438 * 18 17 16 39 39 H 1.08003 * 119.97044 * 180.25173 * 19 18 17 40 40 H 1.08997 * 109.47308 * 210.00199 * 21 20 19 41 41 H 1.09002 * 109.47367 * 330.00384 * 21 20 19 42 42 H 1.09001 * 109.50766 * 297.54158 * 23 22 21 43 43 H 1.09004 * 109.50762 * 57.66676 * 23 22 21 44 44 H 1.09004 * 109.50228 * 296.90821 * 24 23 22 45 45 H 1.09004 * 109.54064 * 176.80536 * 24 23 22 46 46 H 1.08998 * 109.50551 * 298.73369 * 26 25 24 47 47 H 1.09006 * 109.53653 * 178.62514 * 26 25 24 48 48 H 1.08998 * 109.51264 * 302.32960 * 27 22 21 49 49 H 1.09003 * 109.50428 * 62.41501 * 27 22 21 50 50 H 1.08005 * 119.96713 * 179.97438 * 28 20 19 51 51 H 1.07994 * 120.04174 * 180.02562 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3222 -1.1196 4.0080 9 1 3.6303 -0.5442 4.4120 10 1 1.3442 -0.9491 5.1122 11 1 2.4877 -2.5654 3.7122 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2225 -2.3468 14 6 2.5885 -0.5215 -3.5556 15 8 2.8688 -1.6985 -3.4699 16 7 2.7297 0.1208 -4.7321 17 6 3.0933 -0.5927 -5.8795 18 6 2.6666 -1.9034 -6.0482 19 6 3.0225 -2.6031 -7.1846 20 6 3.8067 -2.0013 -8.1516 21 6 4.1927 -2.7675 -9.3906 22 7 3.1782 -2.5575 -10.4321 23 6 1.8931 -3.1571 -10.0443 24 6 0.8518 -2.8641 -11.1277 25 8 1.3242 -3.3609 -12.3828 26 6 2.5736 -2.7976 -12.7915 27 6 3.6323 -3.0899 -11.7250 28 6 4.2379 -0.6982 -7.9840 29 6 3.8859 0.0068 -6.8497 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 0.7094 1.1617 3.4844 34 1 2.9173 -1.1205 -1.0287 35 1 2.7589 1.0462 -2.1181 36 1 1.0872 0.6163 -2.5525 37 1 2.5792 1.0777 -4.7834 38 1 2.0539 -2.3739 -5.2936 39 1 2.6877 -3.6211 -7.3184 40 1 5.1598 -2.4151 -9.7492 41 1 4.2575 -3.8298 -9.1554 42 1 2.0123 -4.2351 -9.9361 43 1 1.5632 -2.7299 -9.0973 44 1 0.6932 -1.7880 -11.1985 45 1 -0.0878 -3.3543 -10.8724 46 1 2.4651 -1.7196 -12.9107 47 1 2.8801 -3.2397 -13.7395 48 1 4.5720 -2.6138 -12.0049 49 1 3.7801 -4.1668 -11.6434 50 1 4.8506 -0.2311 -8.7409 51 1 4.2226 1.0246 -6.7195 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602866104.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:32 Heat of formation + Delta-G solvation = -62.767211 kcal Electronic energy + Delta-G solvation = -29551.012850 eV Core-core repulsion = 25449.444279 eV Total energy + Delta-G solvation = -4101.568571 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.59847 -40.65322 -39.55571 -37.57215 -36.92529 -35.55618 -34.49513 -32.27909 -32.02526 -31.75263 -30.86830 -28.66939 -27.51321 -26.71170 -25.09174 -24.94190 -23.89323 -22.42803 -21.70611 -21.42708 -21.22871 -19.13898 -18.47504 -17.84706 -17.58370 -17.20241 -16.95030 -16.70050 -16.65364 -16.23284 -16.01786 -15.83504 -15.56978 -15.30635 -15.14311 -15.02805 -14.72852 -14.64629 -14.39331 -14.22413 -13.69272 -13.47559 -13.34202 -13.13883 -12.99728 -12.83723 -12.75729 -12.70181 -12.36761 -12.31934 -12.19845 -12.12509 -12.03115 -11.98719 -11.55098 -11.29876 -10.97684 -10.80486 -10.66513 -10.57096 -9.84455 -9.44914 -9.12706 -8.98114 -8.15254 -6.28256 0.23442 0.48279 1.40953 1.42773 1.53302 1.56612 1.97735 2.41572 2.63309 2.92209 3.11429 3.13599 3.62288 3.72758 3.76487 3.92109 3.97099 4.03381 4.09269 4.16856 4.22330 4.33648 4.37833 4.40127 4.43690 4.46686 4.60459 4.61771 4.71474 4.73422 4.77041 4.82496 4.83072 4.91114 5.01578 5.07026 5.10648 5.17807 5.29713 5.37738 5.44620 5.55080 5.64434 5.64622 5.82942 5.90954 5.95768 6.09222 6.18290 6.20879 6.35964 6.42857 6.71612 6.91966 7.14524 7.41613 8.90223 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026901 B = 0.001590 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.613498 B =17610.803273 C =17773.322646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.216 3.784 3 H -0.014 1.014 4 C -0.541 4.541 5 H 0.053 0.947 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.960 3.040 9 H -0.274 1.274 10 H -0.280 1.280 11 H -0.274 1.274 12 N -0.681 5.681 13 C 0.046 3.954 14 C 0.518 3.482 15 O -0.545 6.545 16 N -0.664 5.664 17 C 0.137 3.863 18 C -0.144 4.144 19 C -0.099 4.099 20 C -0.100 4.100 21 C 0.101 3.899 22 N -0.536 5.536 23 C 0.016 3.984 24 C 0.064 3.936 25 O -0.407 6.407 26 C 0.060 3.940 27 C 0.018 3.982 28 C -0.076 4.076 29 C -0.144 4.144 30 H 0.060 0.940 31 H 0.029 0.971 32 H 0.022 0.978 33 H 0.264 0.736 34 H 0.335 0.665 35 H 0.071 0.929 36 H 0.111 0.889 37 H 0.427 0.573 38 H 0.106 0.894 39 H 0.123 0.877 40 H 0.103 0.897 41 H 0.041 0.959 42 H 0.036 0.964 43 H 0.085 0.915 44 H 0.060 0.940 45 H 0.106 0.894 46 H 0.062 0.938 47 H 0.115 0.885 48 H 0.106 0.894 49 H 0.038 0.962 50 H 0.152 0.848 51 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.166 -0.964 -32.122 32.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.108 3.892 3 H 0.003 0.997 4 C -0.580 4.580 5 H 0.071 0.929 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.786 3.214 9 H -0.199 1.199 10 H -0.206 1.206 11 H -0.199 1.199 12 N -0.313 5.313 13 C -0.087 4.087 14 C 0.306 3.694 15 O -0.421 6.421 16 N -0.311 5.311 17 C 0.042 3.958 18 C -0.165 4.165 19 C -0.118 4.118 20 C -0.101 4.101 21 C -0.026 4.026 22 N -0.261 5.261 23 C -0.112 4.112 24 C -0.013 4.013 25 O -0.326 6.326 26 C -0.017 4.017 27 C -0.110 4.110 28 C -0.095 4.095 29 C -0.164 4.164 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.153 0.847 35 H 0.088 0.912 36 H 0.129 0.871 37 H 0.266 0.734 38 H 0.124 0.876 39 H 0.141 0.859 40 H 0.121 0.879 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.103 0.897 44 H 0.078 0.922 45 H 0.124 0.876 46 H 0.080 0.920 47 H 0.133 0.867 48 H 0.124 0.876 49 H 0.056 0.944 50 H 0.169 0.831 51 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.451 -1.546 -32.193 32.688 hybrid contribution 0.894 -0.212 1.871 2.084 sum 6.345 -1.758 -30.323 31.029 Atomic orbital electron populations 1.21569 0.97398 0.98797 0.99548 1.18989 0.92945 0.91246 0.86001 0.99691 1.21543 1.31882 1.12737 0.91791 0.92922 1.25645 0.95112 0.95697 1.01743 1.69989 1.37138 1.23775 1.24266 0.85527 0.78164 0.78855 0.78890 1.19945 1.20572 1.19890 1.60391 1.33204 1.32635 1.05047 1.21866 1.02815 0.94663 0.89344 1.21075 0.76240 0.87434 0.84626 1.90690 1.48786 1.17674 1.84931 1.43447 1.68646 1.12893 1.06148 1.17995 0.97160 0.92858 0.87758 1.21081 1.02090 0.94944 0.98348 1.20973 0.98017 0.99784 0.93011 1.19789 0.99312 0.95378 0.95627 1.21015 0.95596 0.97423 0.88552 1.62254 1.03045 1.58060 1.02774 1.22827 0.91015 0.97446 0.99939 1.22718 0.96623 0.99635 0.82329 1.87962 1.38787 1.67783 1.38116 1.22835 0.82431 0.99078 0.97356 1.22863 1.00090 0.98569 0.89487 1.21063 0.98699 0.93066 0.96668 1.21165 0.98454 1.02093 0.94696 0.92084 0.95156 0.95886 0.92690 0.84749 0.91173 0.87124 0.73404 0.87550 0.85862 0.87884 0.94033 0.94556 0.89665 0.92219 0.87611 0.92012 0.86723 0.87551 0.94365 0.83081 0.83165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.63 9.19 71.98 0.66 -4.97 16 2 C 0.22 10.90 2.60 44.17 0.11 11.02 16 3 H -0.01 -0.77 7.80 -2.39 -0.02 -0.78 16 4 C -0.54 -30.13 8.59 25.60 0.22 -29.91 16 5 H 0.05 2.95 7.62 -2.91 -0.02 2.93 16 6 C 0.02 0.98 5.30 84.65 0.45 1.43 16 7 N -0.91 -51.62 11.32 21.45 0.24 -51.38 16 8 Si 0.96 43.80 29.54 68.60 2.03 45.82 16 9 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 12 N -0.68 -29.85 5.93 -499.48 -2.96 -32.81 16 13 C 0.05 1.51 5.97 85.56 0.51 2.02 16 14 C 0.52 16.48 7.61 87.65 0.67 17.14 16 15 O -0.55 -21.92 13.89 -3.07 -0.04 -21.96 16 16 N -0.66 -15.41 5.34 -303.50 -1.62 -17.03 16 17 C 0.14 3.27 6.28 38.15 0.24 3.51 16 18 C -0.14 -3.92 8.66 22.39 0.19 -3.72 16 19 C -0.10 -2.16 7.92 22.25 0.18 -1.98 16 20 C -0.10 -1.75 4.90 -19.84 -0.10 -1.84 16 21 C 0.10 1.36 5.11 85.56 0.44 1.79 16 22 N -0.54 -7.42 4.72 -899.79 -4.24 -11.67 16 23 C 0.02 0.25 5.27 86.31 0.46 0.70 16 24 C 0.06 0.94 7.01 72.01 0.50 1.44 16 25 O -0.41 -6.88 10.83 -148.98 -1.61 -8.49 16 26 C 0.06 0.67 7.01 72.01 0.50 1.17 16 27 C 0.02 0.19 5.64 86.31 0.49 0.67 16 28 C -0.08 -1.20 9.69 22.25 0.22 -0.98 16 29 C -0.14 -2.55 9.96 22.39 0.22 -2.32 16 30 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 31 H 0.03 1.27 7.45 -2.38 -0.02 1.26 16 32 H 0.02 1.12 8.14 -2.39 -0.02 1.11 16 33 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 34 H 0.33 15.32 7.92 -89.70 -0.71 14.61 16 35 H 0.07 2.10 8.06 -2.38 -0.02 2.08 16 36 H 0.11 3.35 7.44 -2.39 -0.02 3.33 16 37 H 0.43 6.63 8.82 -92.71 -0.82 5.81 16 38 H 0.11 3.51 6.41 -2.91 -0.02 3.50 16 39 H 0.12 2.47 8.00 -2.91 -0.02 2.44 16 40 H 0.10 1.01 7.98 -2.39 -0.02 0.99 16 41 H 0.04 0.59 8.06 -2.39 -0.02 0.57 16 42 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.09 1.44 6.01 -2.39 -0.01 1.43 16 44 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 45 H 0.11 1.31 8.14 -2.39 -0.02 1.30 16 46 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 48 H 0.11 0.71 8.09 -2.39 -0.02 0.69 16 49 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 50 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 51 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -69.86 406.75 -2.83 -72.69 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: -0.58 Total: 29.65 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 5.96 Total: -4.83 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -8.58 Total: -112.89 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -1.66 Total: -30.45 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -69.86 -2.83 -72.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602866104.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.927 kcal (2) G-P(sol) polarization free energy of solvation -69.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds