Wall clock time and date at job start Wed Apr 1 2020 04:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46704 * 2 1 4 4 C 1.50697 * 109.46938 * 119.99904 * 2 1 3 5 5 H 1.07997 * 120.00236 * 120.00369 * 4 2 1 6 6 C 1.37881 * 119.99899 * 300.27381 * 4 2 1 7 7 N 1.31511 * 119.99906 * 359.73169 * 6 4 2 8 8 Si 1.86798 * 120.00013 * 179.72619 * 6 4 2 9 9 H 1.48499 * 109.47300 * 60.00086 * 8 6 4 10 10 H 1.48496 * 109.47118 * 180.02562 * 8 6 4 11 11 H 1.48508 * 109.47139 * 300.00410 * 8 6 4 12 12 N 1.46906 * 109.46999 * 239.99907 * 2 1 3 13 13 C 1.46900 * 110.99730 * 84.99921 * 12 2 1 14 14 H 1.08995 * 109.47300 * 324.99416 * 13 12 2 15 15 C 1.52999 * 109.47035 * 85.00036 * 13 12 2 16 16 C 1.50697 * 109.46757 * 204.99409 * 13 12 2 17 17 O 1.21285 * 120.00332 * 334.40622 * 16 13 12 18 18 N 1.34782 * 119.99859 * 154.40012 * 16 13 12 19 19 C 1.47080 * 120.87981 * 4.62128 * 18 16 13 20 20 C 1.53693 * 108.27281 * 128.75141 * 19 18 16 21 21 N 1.46903 * 109.25782 * 54.08532 * 20 19 18 22 22 C 1.39966 * 111.00061 * 172.60165 * 21 20 19 23 23 C 1.38724 * 120.08831 * 10.25998 * 22 21 20 24 24 C 1.38226 * 119.98030 * 179.69732 * 23 22 21 25 25 C 1.38255 * 120.15660 * 0.57375 * 24 23 22 26 26 C 1.38288 * 120.18368 * 359.72234 * 25 24 23 27 27 C 1.38506 * 120.01192 * 359.97438 * 26 25 24 28 28 O 1.36018 * 120.07674 * 180.02562 * 27 26 25 29 29 C 1.46897 * 111.26677 * 296.75346 * 21 20 19 30 30 C 1.47084 * 120.88018 * 184.89838 * 18 16 13 31 31 H 1.08995 * 109.47149 * 60.00734 * 1 2 3 32 32 H 1.09003 * 109.46842 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47740 * 300.00023 * 1 2 3 34 34 H 0.97005 * 119.99730 * 180.02562 * 7 6 4 35 35 H 1.00901 * 110.99753 * 321.04413 * 12 2 1 36 36 H 1.08999 * 109.47349 * 54.27053 * 15 13 12 37 37 H 1.08999 * 109.46880 * 174.27331 * 15 13 12 38 38 H 1.09006 * 109.47315 * 294.27431 * 15 13 12 39 39 H 1.09000 * 109.62814 * 248.52084 * 19 18 16 40 40 H 1.09003 * 109.62631 * 9.10283 * 19 18 16 41 41 H 1.09000 * 109.65164 * 294.07836 * 20 19 18 42 42 H 1.09005 * 109.43900 * 173.95925 * 20 19 18 43 43 H 1.08003 * 120.01194 * 359.96950 * 23 22 21 44 44 H 1.07995 * 119.92355 * 180.29518 * 24 23 22 45 45 H 1.07999 * 119.91052 * 179.74421 * 25 24 23 46 46 H 1.07991 * 119.99364 * 179.97438 * 26 25 24 47 47 H 0.96698 * 113.99806 * 269.97942 * 28 27 26 48 48 H 1.09002 * 109.49109 * 303.14143 * 29 21 20 49 49 H 1.08997 * 109.51176 * 183.07913 * 29 21 20 50 50 H 1.08997 * 109.62884 * 350.90041 * 30 18 16 51 51 H 1.08998 * 109.62718 * 111.28700 * 30 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6945 -0.2426 2.4827 7 7 0.9384 0.8266 2.6033 8 14 2.3108 -1.1276 4.0079 9 1 3.7958 -1.1283 4.0138 10 1 1.8109 -0.4310 5.2204 11 1 1.8153 -2.5275 4.0021 12 7 2.0197 -0.6925 -1.1995 13 6 2.0824 0.2226 -2.3469 14 1 1.2576 0.9328 -2.2907 15 6 3.4111 0.9809 -2.3224 16 6 1.9787 -0.5677 -3.6258 17 8 2.3225 -1.7306 -3.6498 18 7 1.5037 0.0177 -4.7431 19 6 1.1760 1.4514 -4.7632 20 6 1.8789 2.0895 -5.9719 21 7 1.5141 1.3524 -7.1892 22 6 1.9981 2.0001 -8.3317 23 6 2.8911 3.0545 -8.2077 24 6 3.3724 3.6884 -9.3378 25 6 2.9570 3.2821 -10.5922 26 6 2.0623 2.2358 -10.7233 27 6 1.5801 1.5913 -9.5961 28 8 0.7005 0.5617 -9.7235 29 6 1.9862 -0.0374 -7.1321 30 6 1.2936 -0.7615 -5.9727 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 0.7011 1.1559 3.4844 35 1 1.4496 -1.4980 -1.4100 36 1 4.2350 0.2688 -2.2759 37 1 3.5021 1.5835 -3.2261 38 1 3.4426 1.6305 -1.4477 39 1 0.0973 1.5792 -4.8535 40 1 1.5274 1.9202 -3.8440 41 1 2.9590 2.0483 -5.8316 42 1 1.5639 3.1286 -6.0678 43 1 3.2135 3.3771 -7.2287 44 1 4.0712 4.5060 -9.2404 45 1 3.3325 3.7830 -11.4723 46 1 1.7395 1.9212 -11.7047 47 1 -0.2272 0.8345 -9.7219 48 1 3.0649 -0.0490 -6.9757 49 1 1.7492 -0.5412 -8.0691 50 1 1.7227 -1.7563 -5.8536 51 1 0.2258 -0.8452 -6.1752 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602870076.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:44 Heat of formation + Delta-G solvation = -23.607307 kcal Electronic energy + Delta-G solvation = -31185.238349 eV Core-core repulsion = 27085.367879 eV Total energy + Delta-G solvation = -4099.870470 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.01823 -39.86968 -37.93102 -36.87966 -35.98954 -34.76419 -33.03675 -31.70112 -30.44318 -30.41957 -29.75102 -27.06064 -26.88234 -25.16264 -24.64413 -23.69484 -22.26914 -22.25814 -21.04323 -19.91871 -18.80393 -18.75197 -17.58256 -16.81272 -16.45279 -16.16238 -15.83064 -15.60571 -15.39610 -15.32866 -14.73829 -14.67670 -14.61328 -14.22320 -14.13121 -13.78334 -13.32134 -12.74452 -12.72163 -12.59398 -12.40025 -12.37020 -12.16111 -11.99966 -11.82365 -11.72865 -11.52521 -11.49888 -11.42619 -11.31932 -10.90266 -10.75789 -10.75040 -10.52020 -10.12774 -10.01659 -9.95443 -9.31493 -9.16371 -8.98823 -8.69604 -8.34800 -8.19523 -7.28392 -5.98156 -4.00447 0.87908 0.92908 2.81906 2.89043 3.17948 3.36913 3.39926 3.44356 3.45359 3.93145 4.40720 4.45690 4.47942 4.59877 4.64737 4.75360 4.86198 4.96484 4.99305 5.03486 5.11074 5.11832 5.20138 5.33610 5.35856 5.40002 5.48314 5.58045 5.58533 5.66219 5.71417 5.79251 5.87090 5.91133 6.05055 6.11262 6.26258 6.30875 6.43109 6.59685 6.64133 6.64936 6.77156 6.81187 7.06070 7.25858 7.39085 7.43844 7.72855 7.89463 8.23790 8.35045 8.51908 8.60755 9.06998 9.64621 11.09058 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026482 B = 0.002086 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.065719 B =13420.858697 C =13804.597359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.212 3.788 3 H 0.036 0.964 4 C -0.493 4.493 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.663 5.663 13 C 0.072 3.928 14 H 0.055 0.945 15 C -0.131 4.131 16 C 0.517 3.483 17 O -0.525 6.525 18 N -0.622 5.622 19 C 0.110 3.890 20 C 0.036 3.964 21 N -0.485 5.485 22 C 0.086 3.914 23 C -0.156 4.156 24 C -0.104 4.104 25 C -0.129 4.129 26 C -0.126 4.126 27 C 0.094 3.906 28 O -0.491 6.491 29 C 0.049 3.951 30 C 0.116 3.884 31 H 0.003 0.997 32 H 0.028 0.972 33 H 0.091 0.909 34 H 0.260 0.740 35 H 0.335 0.665 36 H 0.067 0.933 37 H 0.044 0.956 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.052 0.948 42 H 0.093 0.907 43 H 0.131 0.869 44 H 0.125 0.875 45 H 0.125 0.875 46 H 0.129 0.871 47 H 0.389 0.611 48 H 0.044 0.956 49 H 0.103 0.897 50 H 0.098 0.902 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.086 8.250 -27.230 28.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.105 3.895 3 H 0.054 0.946 4 C -0.531 4.531 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.296 5.296 13 C -0.042 4.042 14 H 0.073 0.927 15 C -0.189 4.189 16 C 0.305 3.695 17 O -0.399 6.399 18 N -0.359 5.359 19 C -0.013 4.013 20 C -0.092 4.092 21 N -0.201 5.201 22 C -0.012 4.012 23 C -0.177 4.177 24 C -0.123 4.123 25 C -0.147 4.147 26 C -0.145 4.145 27 C 0.047 3.953 28 O -0.301 6.301 29 C -0.077 4.077 30 C -0.007 4.007 31 H 0.022 0.978 32 H 0.048 0.952 33 H 0.110 0.890 34 H 0.070 0.930 35 H 0.153 0.847 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.118 0.882 41 H 0.070 0.930 42 H 0.111 0.889 43 H 0.149 0.851 44 H 0.143 0.857 45 H 0.143 0.857 46 H 0.147 0.853 47 H 0.245 0.755 48 H 0.062 0.938 49 H 0.121 0.879 50 H 0.117 0.883 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.669 7.368 -26.884 27.884 hybrid contribution -0.491 0.202 0.651 0.840 sum 0.177 7.571 -26.234 27.305 Atomic orbital electron populations 1.22469 1.00762 0.99365 1.00420 1.19263 0.89479 0.94483 0.86296 0.94602 1.21097 1.30105 1.12539 0.89399 0.91849 1.24938 0.95337 0.95249 0.99020 1.69865 1.37306 1.23275 1.23440 0.86544 0.79176 0.79659 0.81903 1.20270 1.21514 1.20361 1.60814 1.58880 1.08110 1.01755 1.21488 0.98829 0.95050 0.88834 0.92691 1.21728 0.96451 0.99723 1.01018 1.21212 0.75519 0.87784 0.84937 1.90673 1.47333 1.17300 1.84582 1.48265 1.66197 1.09698 1.11700 1.21987 1.00559 0.80583 0.98207 1.22795 0.99178 0.98274 0.88975 1.59088 1.57102 1.03181 1.00734 1.19361 0.95282 0.95986 0.90574 1.21393 0.97528 0.98901 0.99831 1.21061 0.99455 0.99638 0.92166 1.20994 0.98603 0.97526 0.97626 1.21331 0.99114 0.95858 0.98235 1.18050 0.95930 0.90875 0.90413 1.84795 1.19168 1.30746 1.95378 1.22657 0.97766 0.86641 1.00601 1.21646 1.00751 0.95959 0.82299 0.97839 0.95248 0.89034 0.93041 0.84664 0.91431 0.93670 0.90991 0.90461 0.88240 0.92969 0.88877 0.85140 0.85733 0.85728 0.85294 0.75456 0.93770 0.87892 0.88342 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 8.92 37.16 0.33 -3.74 16 2 C 0.21 5.28 2.39 -68.86 -0.16 5.11 16 3 H 0.04 0.95 7.17 -51.93 -0.37 0.58 16 4 C -0.49 -13.71 8.84 -34.44 -0.30 -14.01 16 5 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.42 11.31 55.43 0.63 -24.79 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.66 -14.68 5.82 -102.17 -0.59 -15.27 16 13 C 0.07 1.28 1.96 -68.87 -0.14 1.14 16 14 H 0.06 0.94 5.73 -51.93 -0.30 0.65 16 15 C -0.13 -2.12 9.05 37.16 0.34 -1.78 16 16 C 0.52 8.82 6.71 -10.98 -0.07 8.75 16 17 O -0.52 -10.77 15.69 5.55 0.09 -10.68 16 18 N -0.62 -8.23 3.00 -172.18 -0.52 -8.74 16 19 C 0.11 1.14 6.15 -3.37 -0.02 1.12 16 20 C 0.04 0.32 4.31 -3.46 -0.01 0.30 16 21 N -0.48 -4.61 4.49 -170.38 -0.77 -5.38 16 22 C 0.09 0.79 5.43 -83.57 -0.45 0.34 16 23 C -0.16 -1.29 8.81 -39.41 -0.35 -1.64 16 24 C -0.10 -0.75 10.04 -39.58 -0.40 -1.15 16 25 C -0.13 -0.88 10.04 -39.56 -0.40 -1.28 16 26 C -0.13 -0.95 9.98 -39.46 -0.39 -1.34 16 27 C 0.09 0.82 6.42 -39.08 -0.25 0.57 16 28 O -0.49 -3.94 11.60 -19.80 -0.23 -4.17 16 29 C 0.05 0.51 5.38 -3.70 -0.02 0.49 16 30 C 0.12 1.37 6.61 -3.60 -0.02 1.35 16 31 H 0.00 0.06 7.43 -51.93 -0.39 -0.33 16 32 H 0.03 0.69 8.13 -51.93 -0.42 0.26 16 33 H 0.09 2.40 6.06 -51.93 -0.31 2.09 16 34 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.33 7.60 7.69 -39.29 -0.30 7.30 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.04 0.57 7.23 -51.93 -0.38 0.20 16 38 H 0.07 1.22 7.51 -51.93 -0.39 0.83 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.10 1.03 4.96 -51.93 -0.26 0.77 16 41 H 0.05 0.49 7.38 -51.93 -0.38 0.10 16 42 H 0.09 0.68 7.43 -51.93 -0.39 0.30 16 43 H 0.13 0.95 5.91 -52.48 -0.31 0.64 16 44 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 45 H 0.12 0.59 8.06 -52.49 -0.42 0.16 16 46 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 47 H 0.39 1.72 9.06 45.56 0.41 2.13 16 48 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.10 1.06 6.28 -51.93 -0.33 0.73 16 50 H 0.10 1.30 7.04 -51.93 -0.37 0.93 16 51 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 396.99 15.07 5.98 5.98 Total: -1.00 -32.31 396.99 -9.84 -42.15 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -6.98 Total: 8.58 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -2.42 Total: -4.34 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -1.25 Total: -54.18 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.14 Total: -14.85 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.31 -9.84 -42.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870076.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.542 kcal (2) G-P(sol) polarization free energy of solvation -32.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds