Wall clock time and date at job start Wed Apr 1 2020 04:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46704 * 2 1 4 4 C 1.50697 * 109.46938 * 119.99904 * 2 1 3 5 5 H 1.07997 * 120.00236 * 120.00369 * 4 2 1 6 6 C 1.37881 * 119.99899 * 300.27381 * 4 2 1 7 7 N 1.31511 * 119.99906 * 359.73169 * 6 4 2 8 8 Si 1.86798 * 120.00013 * 179.72619 * 6 4 2 9 9 H 1.48499 * 109.47300 * 60.00086 * 8 6 4 10 10 H 1.48496 * 109.47118 * 180.02562 * 8 6 4 11 11 H 1.48508 * 109.47139 * 300.00410 * 8 6 4 12 12 N 1.46906 * 109.46999 * 239.99907 * 2 1 3 13 13 C 1.46900 * 110.99730 * 84.99921 * 12 2 1 14 14 H 1.08995 * 109.47300 * 324.99416 * 13 12 2 15 15 C 1.52999 * 109.47035 * 85.00036 * 13 12 2 16 16 C 1.50697 * 109.46757 * 204.99409 * 13 12 2 17 17 O 1.21285 * 120.00332 * 334.40622 * 16 13 12 18 18 N 1.34782 * 119.99859 * 154.40012 * 16 13 12 19 19 C 1.47080 * 120.87981 * 4.62128 * 18 16 13 20 20 C 1.53693 * 108.27281 * 128.75141 * 19 18 16 21 21 N 1.46903 * 109.25782 * 54.08532 * 20 19 18 22 22 C 1.39966 * 111.00061 * 172.60165 * 21 20 19 23 23 C 1.38724 * 120.08831 * 10.25998 * 22 21 20 24 24 C 1.38226 * 119.98030 * 179.69732 * 23 22 21 25 25 C 1.38255 * 120.15660 * 0.57375 * 24 23 22 26 26 C 1.38288 * 120.18368 * 359.72234 * 25 24 23 27 27 C 1.38506 * 120.01192 * 359.97438 * 26 25 24 28 28 O 1.36018 * 120.07674 * 180.02562 * 27 26 25 29 29 C 1.46897 * 111.26677 * 296.75346 * 21 20 19 30 30 C 1.47084 * 120.88018 * 184.89838 * 18 16 13 31 31 H 1.08995 * 109.47149 * 60.00734 * 1 2 3 32 32 H 1.09003 * 109.46842 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47740 * 300.00023 * 1 2 3 34 34 H 0.97005 * 119.99730 * 180.02562 * 7 6 4 35 35 H 1.00901 * 110.99753 * 321.04413 * 12 2 1 36 36 H 1.08999 * 109.47349 * 54.27053 * 15 13 12 37 37 H 1.08999 * 109.46880 * 174.27331 * 15 13 12 38 38 H 1.09006 * 109.47315 * 294.27431 * 15 13 12 39 39 H 1.09000 * 109.62814 * 248.52084 * 19 18 16 40 40 H 1.09003 * 109.62631 * 9.10283 * 19 18 16 41 41 H 1.09000 * 109.65164 * 294.07836 * 20 19 18 42 42 H 1.09005 * 109.43900 * 173.95925 * 20 19 18 43 43 H 1.08003 * 120.01194 * 359.96950 * 23 22 21 44 44 H 1.07995 * 119.92355 * 180.29518 * 24 23 22 45 45 H 1.07999 * 119.91052 * 179.74421 * 25 24 23 46 46 H 1.07991 * 119.99364 * 179.97438 * 26 25 24 47 47 H 0.96698 * 113.99806 * 269.97942 * 28 27 26 48 48 H 1.09002 * 109.49109 * 303.14143 * 29 21 20 49 49 H 1.08997 * 109.51176 * 183.07913 * 29 21 20 50 50 H 1.08997 * 109.62884 * 350.90041 * 30 18 16 51 51 H 1.08998 * 109.62718 * 111.28700 * 30 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6945 -0.2426 2.4827 7 7 0.9384 0.8266 2.6033 8 14 2.3108 -1.1276 4.0079 9 1 3.7958 -1.1283 4.0138 10 1 1.8109 -0.4310 5.2204 11 1 1.8153 -2.5275 4.0021 12 7 2.0197 -0.6925 -1.1995 13 6 2.0824 0.2226 -2.3469 14 1 1.2576 0.9328 -2.2907 15 6 3.4111 0.9809 -2.3224 16 6 1.9787 -0.5677 -3.6258 17 8 2.3225 -1.7306 -3.6498 18 7 1.5037 0.0177 -4.7431 19 6 1.1760 1.4514 -4.7632 20 6 1.8789 2.0895 -5.9719 21 7 1.5141 1.3524 -7.1892 22 6 1.9981 2.0001 -8.3317 23 6 2.8911 3.0545 -8.2077 24 6 3.3724 3.6884 -9.3378 25 6 2.9570 3.2821 -10.5922 26 6 2.0623 2.2358 -10.7233 27 6 1.5801 1.5913 -9.5961 28 8 0.7005 0.5617 -9.7235 29 6 1.9862 -0.0374 -7.1321 30 6 1.2936 -0.7615 -5.9727 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 0.7011 1.1559 3.4844 35 1 1.4496 -1.4980 -1.4100 36 1 4.2350 0.2688 -2.2759 37 1 3.5021 1.5835 -3.2261 38 1 3.4426 1.6305 -1.4477 39 1 0.0973 1.5792 -4.8535 40 1 1.5274 1.9202 -3.8440 41 1 2.9590 2.0483 -5.8316 42 1 1.5639 3.1286 -6.0678 43 1 3.2135 3.3771 -7.2287 44 1 4.0712 4.5060 -9.2404 45 1 3.3325 3.7830 -11.4723 46 1 1.7395 1.9212 -11.7047 47 1 -0.2272 0.8345 -9.7219 48 1 3.0649 -0.0490 -6.9757 49 1 1.7492 -0.5412 -8.0691 50 1 1.7227 -1.7563 -5.8536 51 1 0.2258 -0.8452 -6.1752 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602870076.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:43 Heat of formation + Delta-G solvation = -46.899171 kcal Electronic energy + Delta-G solvation = -31186.248360 eV Core-core repulsion = 27085.367879 eV Total energy + Delta-G solvation = -4100.880481 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.84997 -40.90904 -38.85714 -37.72209 -37.42908 -35.77031 -34.86464 -32.85543 -31.87706 -31.07601 -30.50699 -28.78306 -27.75931 -27.23211 -25.52185 -24.83435 -23.23427 -22.88426 -22.16473 -21.51854 -19.95289 -19.38992 -18.84231 -18.12516 -17.45783 -17.29276 -16.90384 -16.66394 -16.45408 -16.36906 -16.20942 -15.82568 -15.29495 -15.22443 -15.18298 -14.78591 -14.62647 -14.50203 -13.94389 -13.75428 -13.43407 -13.32286 -13.20566 -13.08067 -13.05578 -12.89434 -12.84057 -12.77734 -12.63678 -12.59653 -12.33205 -12.30994 -12.22806 -12.09683 -11.92597 -11.35783 -11.07607 -10.71751 -10.63701 -10.46551 -9.80217 -9.69126 -9.03836 -8.85836 -8.09444 -6.18844 0.31496 0.36096 1.43785 1.45076 1.48866 1.53208 1.80245 2.45049 2.52440 2.81370 3.19020 3.37648 3.39980 3.50463 3.72471 3.81958 3.95724 4.04815 4.10381 4.13269 4.18953 4.23377 4.31007 4.39228 4.50035 4.55141 4.55810 4.63063 4.64172 4.73187 4.77988 4.84019 4.85962 4.87871 4.92849 5.00108 5.09998 5.23489 5.28603 5.36619 5.38335 5.42721 5.57704 5.69611 5.74417 5.81221 5.89588 6.12738 6.21714 6.29805 6.60653 6.70390 6.91870 6.92493 7.08200 7.50052 8.95852 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026482 B = 0.002086 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.065719 B =13420.858697 C =13804.597359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.220 3.780 3 H 0.019 0.981 4 C -0.517 4.517 5 H 0.048 0.952 6 C 0.013 3.987 7 N -0.917 5.917 8 Si 0.957 3.043 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.276 1.276 12 N -0.675 5.675 13 C 0.071 3.929 14 H 0.069 0.931 15 C -0.124 4.124 16 C 0.519 3.481 17 O -0.568 6.568 18 N -0.612 5.612 19 C 0.105 3.895 20 C 0.040 3.960 21 N -0.483 5.483 22 C 0.063 3.937 23 C -0.163 4.163 24 C -0.111 4.111 25 C -0.127 4.127 26 C -0.135 4.135 27 C 0.085 3.915 28 O -0.502 6.502 29 C 0.062 3.938 30 C 0.118 3.882 31 H 0.029 0.971 32 H 0.024 0.976 33 H 0.067 0.933 34 H 0.262 0.738 35 H 0.329 0.671 36 H 0.048 0.952 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.049 0.951 42 H 0.115 0.885 43 H 0.138 0.862 44 H 0.145 0.855 45 H 0.147 0.853 46 H 0.142 0.858 47 H 0.403 0.597 48 H 0.029 0.971 49 H 0.105 0.895 50 H 0.081 0.919 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.169 9.802 -28.826 30.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.112 3.888 3 H 0.037 0.963 4 C -0.555 4.555 5 H 0.066 0.934 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.783 3.217 9 H -0.200 1.200 10 H -0.206 1.206 11 H -0.202 1.202 12 N -0.307 5.307 13 C -0.042 4.042 14 H 0.086 0.914 15 C -0.182 4.182 16 C 0.307 3.693 17 O -0.446 6.446 18 N -0.346 5.346 19 C -0.017 4.017 20 C -0.087 4.087 21 N -0.200 5.200 22 C -0.034 4.034 23 C -0.183 4.183 24 C -0.129 4.129 25 C -0.145 4.145 26 C -0.154 4.154 27 C 0.038 3.962 28 O -0.314 6.314 29 C -0.064 4.064 30 C -0.005 4.005 31 H 0.048 0.952 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.147 0.853 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.121 0.879 41 H 0.068 0.932 42 H 0.133 0.867 43 H 0.156 0.844 44 H 0.162 0.838 45 H 0.165 0.835 46 H 0.160 0.840 47 H 0.262 0.738 48 H 0.047 0.953 49 H 0.123 0.877 50 H 0.099 0.901 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.565 8.969 -28.527 29.909 hybrid contribution -0.479 -0.213 0.999 1.128 sum 0.085 8.756 -27.528 28.887 Atomic orbital electron populations 1.22275 1.00012 0.98994 1.00465 1.19009 0.89885 0.93228 0.86660 0.96320 1.21362 1.30476 1.12515 0.91184 0.93413 1.25623 0.95460 0.95936 1.01533 1.69964 1.37689 1.24005 1.24073 0.85630 0.78638 0.78611 0.78803 1.20037 1.20646 1.20166 1.60676 1.58600 1.08675 1.02700 1.21553 1.00124 0.94599 0.87951 0.91372 1.21672 0.94802 0.99275 1.02447 1.20988 0.75630 0.87079 0.85572 1.90656 1.49661 1.18976 1.85281 1.48269 1.64382 1.11046 1.10949 1.22233 1.01605 0.78643 0.99262 1.22792 0.98832 0.99091 0.88009 1.59090 1.57257 1.02514 1.01170 1.19480 0.96537 0.96837 0.90511 1.21575 0.97374 0.98677 1.00702 1.21356 0.99585 1.00036 0.91967 1.21329 0.97754 0.97009 0.98457 1.21568 0.99245 0.96034 0.98545 1.18245 0.96208 0.91010 0.90710 1.84750 1.20226 1.31053 1.95373 1.22453 0.96565 0.87607 0.99772 1.21708 1.01512 0.95232 0.82035 0.95221 0.95734 0.91377 0.92891 0.85313 0.93260 0.89867 0.92031 0.89249 0.87899 0.93233 0.86727 0.84423 0.83770 0.83489 0.83989 0.73838 0.95253 0.87706 0.90086 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.54 8.92 71.98 0.64 -6.90 16 2 C 0.22 11.10 2.39 44.17 0.11 11.20 16 3 H 0.02 1.01 7.17 -2.39 -0.02 0.99 16 4 C -0.52 -29.25 8.84 25.60 0.23 -29.02 16 5 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 6 C 0.01 0.72 5.30 84.66 0.45 1.17 16 7 N -0.92 -52.04 11.31 21.45 0.24 -51.79 16 8 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 9 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 N -0.67 -30.34 5.82 -477.16 -2.78 -33.12 16 13 C 0.07 2.50 1.96 44.17 0.09 2.59 16 14 H 0.07 2.24 5.73 -2.39 -0.01 2.23 16 15 C -0.12 -3.93 9.05 71.98 0.65 -3.28 16 16 C 0.52 17.61 6.71 87.66 0.59 18.20 16 17 O -0.57 -23.80 15.69 -3.04 -0.05 -23.85 16 18 N -0.61 -15.55 3.00 -817.04 -2.45 -18.00 16 19 C 0.10 1.95 6.15 86.50 0.53 2.48 16 20 C 0.04 0.62 4.31 86.54 0.37 1.00 16 21 N -0.48 -8.36 4.49 -692.95 -3.11 -11.47 16 22 C 0.06 1.06 5.43 38.22 0.21 1.27 16 23 C -0.16 -2.34 8.81 22.38 0.20 -2.15 16 24 C -0.11 -1.31 10.04 22.27 0.22 -1.08 16 25 C -0.13 -1.41 10.04 22.29 0.22 -1.18 16 26 C -0.14 -1.76 9.98 22.35 0.22 -1.53 16 27 C 0.08 1.35 6.42 22.59 0.15 1.49 16 28 O -0.50 -7.39 11.60 -93.76 -1.09 -8.48 16 29 C 0.06 1.25 5.38 86.38 0.46 1.71 16 30 C 0.12 2.70 6.61 86.35 0.57 3.27 16 31 H 0.03 1.21 7.43 -2.39 -0.02 1.19 16 32 H 0.02 1.14 8.13 -2.39 -0.02 1.12 16 33 H 0.07 3.59 6.06 -2.39 -0.01 3.57 16 34 H 0.26 14.17 8.31 -92.70 -0.77 13.40 16 35 H 0.33 15.28 7.69 -89.69 -0.69 14.59 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.08 1.96 7.23 -2.39 -0.02 1.94 16 38 H 0.06 2.08 7.51 -2.38 -0.02 2.06 16 39 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.10 1.86 4.96 -2.39 -0.01 1.85 16 41 H 0.05 0.81 7.38 -2.39 -0.02 0.79 16 42 H 0.11 1.33 7.43 -2.38 -0.02 1.31 16 43 H 0.14 1.68 5.91 -2.91 -0.02 1.67 16 44 H 0.14 1.06 8.06 -2.91 -0.02 1.04 16 45 H 0.15 0.91 8.06 -2.91 -0.02 0.89 16 46 H 0.14 1.38 8.06 -2.92 -0.02 1.36 16 47 H 0.40 3.01 9.06 -74.06 -0.67 2.34 16 48 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.10 2.08 6.28 -2.39 -0.01 2.07 16 50 H 0.08 2.18 7.04 -2.39 -0.02 2.16 16 51 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -70.08 396.99 -1.69 -71.78 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: -0.39 Total: 29.07 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 5.91 Total: -0.77 kcal Atomic # 7 Polarization: -106.28 SS G_CDS: -8.10 Total: -114.38 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -1.14 Total: -32.33 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -70.08 -1.69 -71.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870076.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.877 kcal (2) G-P(sol) polarization free energy of solvation -70.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds