Wall clock time and date at job start Wed Apr 1 2020 04:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47199 * 2 1 4 4 C 1.50702 * 109.47211 * 240.00321 * 2 1 3 5 5 H 1.08001 * 119.99984 * 240.00192 * 4 2 1 6 6 C 1.37880 * 120.00104 * 59.99747 * 4 2 1 7 7 N 1.31509 * 119.99980 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99884 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47707 * 59.99610 * 8 6 4 10 10 H 1.48500 * 109.47046 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46944 * 299.99831 * 8 6 4 12 12 N 1.46901 * 109.47504 * 120.00075 * 2 1 3 13 13 C 1.46890 * 111.00278 * 206.42261 * 12 2 1 14 14 H 1.09010 * 109.47388 * 327.88423 * 13 12 2 15 15 C 1.52996 * 109.47390 * 87.88218 * 13 12 2 16 16 C 1.50703 * 109.47407 * 207.88423 * 13 12 2 17 17 O 1.21274 * 119.99500 * 344.88578 * 16 13 12 18 18 N 1.34771 * 120.00250 * 164.87922 * 16 13 12 19 19 C 1.47081 * 120.88204 * 176.27217 * 18 16 13 20 20 C 1.53245 * 108.51866 * 231.21274 * 19 18 16 21 21 N 1.46896 * 109.34040 * 306.16410 * 20 19 18 22 22 C 1.39961 * 111.00467 * 187.25669 * 21 20 19 23 23 C 1.38729 * 120.09025 * 300.02807 * 22 21 20 24 24 C 1.38218 * 119.98449 * 179.97438 * 23 22 21 25 25 C 1.38257 * 120.15916 * 359.97438 * 24 23 22 26 26 C 1.38293 * 120.17925 * 0.02562 * 25 24 23 27 27 C 1.38505 * 120.01584 * 0.02562 * 26 25 24 28 28 O 1.36008 * 120.07873 * 180.02562 * 27 26 25 29 29 C 1.46904 * 111.26718 * 63.10814 * 21 20 19 30 30 C 1.47084 * 120.88100 * 356.29776 * 18 16 13 31 31 H 1.09004 * 109.47150 * 181.04797 * 1 2 3 32 32 H 1.08992 * 109.47242 * 301.04675 * 1 2 3 33 33 H 1.08995 * 109.47222 * 61.05260 * 1 2 3 34 34 H 0.96999 * 120.00185 * 179.97438 * 7 6 4 35 35 H 1.00905 * 110.99586 * 330.37702 * 12 2 1 36 36 H 1.08995 * 109.47461 * 185.75466 * 15 13 12 37 37 H 1.09005 * 109.47133 * 305.75861 * 15 13 12 38 38 H 1.09006 * 109.47239 * 65.75764 * 15 13 12 39 39 H 1.08998 * 109.62803 * 111.50355 * 19 18 16 40 40 H 1.08996 * 109.62773 * 350.91650 * 19 18 16 41 41 H 1.08999 * 109.48854 * 186.21229 * 20 19 18 42 42 H 1.08999 * 109.51800 * 66.14505 * 20 19 18 43 43 H 1.08003 * 120.00396 * 359.95264 * 23 22 21 44 44 H 1.07996 * 119.92239 * 179.97438 * 24 23 22 45 45 H 1.08000 * 119.91186 * 180.27949 * 25 24 23 46 46 H 1.07996 * 119.98841 * 179.97438 * 26 25 24 47 47 H 0.96702 * 114.00287 * 89.99498 * 28 27 26 48 48 H 1.08999 * 109.49031 * 56.85297 * 29 21 20 49 49 H 1.09001 * 109.49275 * 176.93645 * 29 21 20 50 50 H 1.09001 * 109.62840 * 248.49639 * 30 18 16 51 51 H 1.09003 * 109.62817 * 8.88561 * 30 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.8260 -2.5201 -4.0079 10 1 1.8269 -0.4197 -5.2205 11 1 3.8064 -1.1207 -4.0082 12 7 2.0197 -0.6925 1.1994 13 6 3.3531 -0.2075 1.5798 14 1 3.9046 0.0792 0.6843 15 6 3.2108 1.0056 2.5012 16 6 4.0987 -1.3010 2.3005 17 8 3.4994 -2.2673 2.7221 18 7 5.4315 -1.2051 2.4762 19 6 6.1663 -2.2199 3.2467 20 6 7.0184 -1.5069 4.3022 21 7 7.8587 -0.4957 3.6471 22 6 8.7684 0.0633 4.5519 23 6 8.3087 0.7246 5.6815 24 6 9.2091 1.2754 6.5739 25 6 10.5683 1.1686 6.3443 26 6 11.0339 0.5108 5.2205 27 6 10.1382 -0.0429 4.3208 28 8 10.5947 -0.6906 3.2154 29 6 7.0409 0.5461 3.0115 30 6 6.1897 -0.0826 1.9031 31 1 -0.3634 -1.0275 0.0188 32 1 -0.3633 0.5300 0.8804 33 1 -0.3633 0.4974 -0.8992 34 1 0.7095 1.1619 -3.4844 35 1 1.3682 -0.5962 1.9639 36 1 4.1957 1.4275 2.7012 37 1 2.5848 1.7566 2.0192 38 1 2.7505 0.6969 3.4399 39 1 6.8120 -2.7900 2.5789 40 1 5.4599 -2.8893 3.7376 41 1 7.6528 -2.2340 4.8091 42 1 6.3670 -1.0227 5.0298 43 1 7.2475 0.8094 5.8632 44 1 8.8501 1.7904 7.4526 45 1 11.2684 1.5965 7.0465 46 1 12.0962 0.4295 5.0439 47 1 10.7427 -1.6371 3.3471 48 1 6.3889 1.0017 3.7567 49 1 7.6917 1.3080 2.5824 50 1 6.8377 -0.4474 1.1062 51 1 5.4988 0.6593 1.5026 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602870077.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:47 Heat of formation + Delta-G solvation = -22.517442 kcal Electronic energy + Delta-G solvation = -31358.827192 eV Core-core repulsion = 27259.003982 eV Total energy + Delta-G solvation = -4099.823210 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.82301 -39.69525 -37.82689 -36.77043 -35.98837 -34.57087 -33.04213 -31.47549 -30.61254 -30.28052 -29.73856 -26.94552 -26.73372 -25.13279 -24.25487 -23.42424 -22.89272 -22.11591 -20.80452 -20.22981 -18.67978 -18.61352 -17.33162 -16.51116 -16.11467 -16.05142 -15.93761 -15.65057 -15.26245 -15.20509 -14.83704 -14.58030 -14.39913 -14.14417 -13.95018 -13.67297 -13.37129 -12.94371 -12.74642 -12.61882 -12.55923 -12.36349 -12.19110 -12.09086 -11.96274 -11.49334 -11.47827 -11.36893 -11.32621 -10.94767 -10.84022 -10.75452 -10.67516 -10.30906 -10.14686 -9.91005 -9.27685 -9.23787 -9.03615 -8.92879 -8.85261 -8.39198 -8.37452 -7.22122 -5.96549 -4.00201 0.84470 0.90491 3.04759 3.13344 3.22096 3.35975 3.39733 3.44496 3.49447 3.95528 4.46040 4.52218 4.60411 4.63821 4.76163 4.86578 4.95257 5.00525 5.02689 5.17887 5.18560 5.22056 5.28037 5.34046 5.36887 5.48725 5.49692 5.54760 5.59266 5.74101 5.77525 5.89460 5.91168 5.99174 6.04192 6.09344 6.17464 6.34322 6.35090 6.57093 6.66990 6.76553 6.93314 6.97566 7.04138 7.38572 7.49417 7.64361 7.76402 7.93804 8.25152 8.37259 8.65544 8.74310 9.07837 9.65245 11.09459 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016624 B = 0.002454 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.881674 B =11405.654614 C =11986.827825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.214 3.786 3 H 0.004 0.996 4 C -0.494 4.494 5 H 0.060 0.940 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.664 5.664 13 C 0.076 3.924 14 H 0.105 0.895 15 C -0.174 4.174 16 C 0.528 3.472 17 O -0.525 6.525 18 N -0.623 5.623 19 C 0.119 3.881 20 C 0.048 3.952 21 N -0.493 5.493 22 C 0.064 3.936 23 C -0.133 4.133 24 C -0.121 4.121 25 C -0.107 4.107 26 C -0.144 4.144 27 C 0.132 3.868 28 O -0.484 6.484 29 C 0.050 3.950 30 C 0.111 3.889 31 H 0.036 0.964 32 H 0.006 0.994 33 H 0.090 0.910 34 H 0.260 0.740 35 H 0.325 0.675 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.042 0.958 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.126 0.874 46 H 0.131 0.869 47 H 0.389 0.611 48 H 0.042 0.958 49 H 0.088 0.912 50 H 0.078 0.922 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.537 2.005 18.679 27.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.107 3.893 3 H 0.022 0.978 4 C -0.533 4.533 5 H 0.078 0.922 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.294 5.294 13 C -0.038 4.038 14 H 0.122 0.878 15 C -0.234 4.234 16 C 0.316 3.684 17 O -0.399 6.399 18 N -0.359 5.359 19 C -0.004 4.004 20 C -0.080 4.080 21 N -0.215 5.215 22 C -0.031 4.031 23 C -0.153 4.153 24 C -0.140 4.140 25 C -0.125 4.125 26 C -0.163 4.163 27 C 0.086 3.914 28 O -0.294 6.294 29 C -0.077 4.077 30 C -0.012 4.012 31 H 0.055 0.945 32 H 0.025 0.975 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.142 0.858 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.060 0.940 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.144 0.856 46 H 0.149 0.851 47 H 0.245 0.755 48 H 0.061 0.939 49 H 0.106 0.894 50 H 0.096 0.904 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 19.522 1.342 17.723 26.400 hybrid contribution -0.214 0.461 0.296 0.588 sum 19.307 1.803 18.019 26.471 Atomic orbital electron populations 1.21947 0.98072 0.99749 1.00446 1.19211 0.91686 0.91949 0.86463 0.97840 1.21169 1.30492 1.12012 0.89583 0.92154 1.24942 0.95392 0.95144 0.98981 1.69864 1.37302 1.23183 1.23432 0.86601 0.79088 0.79845 0.82102 1.20285 1.21456 1.20376 1.60332 1.00480 1.60756 1.07859 1.21369 0.94521 0.90264 0.97692 0.87761 1.22483 1.02120 0.98726 1.00032 1.21097 0.80657 0.88002 0.78620 1.90617 1.67154 1.32708 1.49391 1.48198 1.07169 1.25762 1.54804 1.21554 0.94561 0.90923 0.93354 1.22581 0.94951 0.94608 0.95836 1.59545 1.17694 1.14175 1.30102 1.19223 0.92336 0.99041 0.92457 1.21644 1.00248 0.98448 0.94968 1.21065 0.93175 1.00174 0.99565 1.21073 0.95634 0.98747 0.97094 1.21425 1.00026 1.00649 0.94176 1.18332 0.89415 0.96694 0.86967 1.84830 1.86710 1.25556 1.32267 1.22558 0.95196 0.93137 0.96849 1.21879 0.94853 0.89288 0.95226 0.94523 0.97535 0.89097 0.93027 0.85782 0.92518 0.91157 0.92630 0.91014 0.88656 0.89822 0.94023 0.85944 0.85818 0.85588 0.85149 0.75470 0.93933 0.89379 0.90370 0.88416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 8.95 37.16 0.33 -3.16 16 2 C 0.21 5.33 2.40 -68.86 -0.17 5.16 16 3 H 0.00 0.10 7.32 -51.93 -0.38 -0.28 16 4 C -0.49 -13.72 8.59 -34.44 -0.30 -14.02 16 5 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 6 C 0.06 1.55 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -25.45 11.31 55.43 0.63 -24.82 16 8 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 N -0.66 -14.67 5.59 -102.17 -0.57 -15.24 16 13 C 0.08 1.41 1.92 -68.87 -0.13 1.27 16 14 H 0.10 2.05 6.50 -51.92 -0.34 1.71 16 15 C -0.17 -2.59 8.87 37.16 0.33 -2.26 16 16 C 0.53 9.62 6.99 -10.99 -0.08 9.55 16 17 O -0.52 -11.37 15.97 5.56 0.09 -11.28 16 18 N -0.62 -8.96 3.01 -172.45 -0.52 -9.48 16 19 C 0.12 1.47 6.59 -3.60 -0.02 1.45 16 20 C 0.05 0.48 5.25 -3.70 -0.02 0.46 16 21 N -0.49 -5.06 4.35 -170.65 -0.74 -5.80 16 22 C 0.06 0.62 4.68 -83.56 -0.39 0.22 16 23 C -0.13 -1.15 8.73 -39.41 -0.34 -1.49 16 24 C -0.12 -0.88 10.04 -39.58 -0.40 -1.28 16 25 C -0.11 -0.73 10.04 -39.55 -0.40 -1.13 16 26 C -0.14 -1.10 9.98 -39.46 -0.39 -1.49 16 27 C 0.13 1.22 6.72 -39.08 -0.26 0.95 16 28 O -0.48 -4.44 13.25 -19.77 -0.26 -4.70 16 29 C 0.05 0.52 5.31 -3.70 -0.02 0.50 16 30 C 0.11 1.35 5.94 -3.60 -0.02 1.33 16 31 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.01 0.12 8.13 -51.93 -0.42 -0.30 16 33 H 0.09 2.41 6.04 -51.93 -0.31 2.10 16 34 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.32 6.78 8.04 -39.29 -0.32 6.46 16 36 H 0.06 0.70 6.56 -51.93 -0.34 0.36 16 37 H 0.07 1.10 7.63 -51.93 -0.40 0.70 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.10 1.28 7.09 -51.93 -0.37 0.92 16 41 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 42 H 0.04 0.43 7.40 -51.93 -0.38 0.05 16 43 H 0.12 1.03 7.18 -52.48 -0.38 0.65 16 44 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 45 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 46 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 47 H 0.39 2.00 9.07 45.56 0.41 2.41 16 48 H 0.04 0.44 7.62 -51.93 -0.40 0.04 16 49 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16 50 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 51 H 0.10 1.19 4.65 -51.93 -0.24 0.95 16 LS Contribution 402.91 15.07 6.07 6.07 Total: -1.00 -33.07 402.91 -9.90 -42.97 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -7.20 Total: 8.07 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -2.37 Total: -2.49 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -1.21 Total: -55.34 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.17 Total: -15.98 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.07 -9.90 -42.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870077.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.454 kcal (2) G-P(sol) polarization free energy of solvation -33.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds