Wall clock time and date at job start Wed Apr 1 2020 04:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47199 * 2 1 4 4 C 1.50702 * 109.47211 * 240.00321 * 2 1 3 5 5 H 1.08001 * 119.99984 * 240.00192 * 4 2 1 6 6 C 1.37880 * 120.00104 * 59.99747 * 4 2 1 7 7 N 1.31509 * 119.99980 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99884 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47707 * 59.99610 * 8 6 4 10 10 H 1.48500 * 109.47046 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46944 * 299.99831 * 8 6 4 12 12 N 1.46901 * 109.47504 * 120.00075 * 2 1 3 13 13 C 1.46890 * 111.00278 * 206.42261 * 12 2 1 14 14 H 1.09010 * 109.47388 * 327.88423 * 13 12 2 15 15 C 1.52996 * 109.47390 * 87.88218 * 13 12 2 16 16 C 1.50703 * 109.47407 * 207.88423 * 13 12 2 17 17 O 1.21274 * 119.99500 * 344.88578 * 16 13 12 18 18 N 1.34771 * 120.00250 * 164.87922 * 16 13 12 19 19 C 1.47081 * 120.88204 * 176.27217 * 18 16 13 20 20 C 1.53245 * 108.51866 * 231.21274 * 19 18 16 21 21 N 1.46896 * 109.34040 * 306.16410 * 20 19 18 22 22 C 1.39961 * 111.00467 * 187.25669 * 21 20 19 23 23 C 1.38729 * 120.09025 * 300.02807 * 22 21 20 24 24 C 1.38218 * 119.98449 * 179.97438 * 23 22 21 25 25 C 1.38257 * 120.15916 * 359.97438 * 24 23 22 26 26 C 1.38293 * 120.17925 * 0.02562 * 25 24 23 27 27 C 1.38505 * 120.01584 * 0.02562 * 26 25 24 28 28 O 1.36008 * 120.07873 * 180.02562 * 27 26 25 29 29 C 1.46904 * 111.26718 * 63.10814 * 21 20 19 30 30 C 1.47084 * 120.88100 * 356.29776 * 18 16 13 31 31 H 1.09004 * 109.47150 * 181.04797 * 1 2 3 32 32 H 1.08992 * 109.47242 * 301.04675 * 1 2 3 33 33 H 1.08995 * 109.47222 * 61.05260 * 1 2 3 34 34 H 0.96999 * 120.00185 * 179.97438 * 7 6 4 35 35 H 1.00905 * 110.99586 * 330.37702 * 12 2 1 36 36 H 1.08995 * 109.47461 * 185.75466 * 15 13 12 37 37 H 1.09005 * 109.47133 * 305.75861 * 15 13 12 38 38 H 1.09006 * 109.47239 * 65.75764 * 15 13 12 39 39 H 1.08998 * 109.62803 * 111.50355 * 19 18 16 40 40 H 1.08996 * 109.62773 * 350.91650 * 19 18 16 41 41 H 1.08999 * 109.48854 * 186.21229 * 20 19 18 42 42 H 1.08999 * 109.51800 * 66.14505 * 20 19 18 43 43 H 1.08003 * 120.00396 * 359.95264 * 23 22 21 44 44 H 1.07996 * 119.92239 * 179.97438 * 24 23 22 45 45 H 1.08000 * 119.91186 * 180.27949 * 25 24 23 46 46 H 1.07996 * 119.98841 * 179.97438 * 26 25 24 47 47 H 0.96702 * 114.00287 * 89.99498 * 28 27 26 48 48 H 1.08999 * 109.49031 * 56.85297 * 29 21 20 49 49 H 1.09001 * 109.49275 * 176.93645 * 29 21 20 50 50 H 1.09001 * 109.62840 * 248.49639 * 30 18 16 51 51 H 1.09003 * 109.62817 * 8.88561 * 30 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.8260 -2.5201 -4.0079 10 1 1.8269 -0.4197 -5.2205 11 1 3.8064 -1.1207 -4.0082 12 7 2.0197 -0.6925 1.1994 13 6 3.3531 -0.2075 1.5798 14 1 3.9046 0.0792 0.6843 15 6 3.2108 1.0056 2.5012 16 6 4.0987 -1.3010 2.3005 17 8 3.4994 -2.2673 2.7221 18 7 5.4315 -1.2051 2.4762 19 6 6.1663 -2.2199 3.2467 20 6 7.0184 -1.5069 4.3022 21 7 7.8587 -0.4957 3.6471 22 6 8.7684 0.0633 4.5519 23 6 8.3087 0.7246 5.6815 24 6 9.2091 1.2754 6.5739 25 6 10.5683 1.1686 6.3443 26 6 11.0339 0.5108 5.2205 27 6 10.1382 -0.0429 4.3208 28 8 10.5947 -0.6906 3.2154 29 6 7.0409 0.5461 3.0115 30 6 6.1897 -0.0826 1.9031 31 1 -0.3634 -1.0275 0.0188 32 1 -0.3633 0.5300 0.8804 33 1 -0.3633 0.4974 -0.8992 34 1 0.7095 1.1619 -3.4844 35 1 1.3682 -0.5962 1.9639 36 1 4.1957 1.4275 2.7012 37 1 2.5848 1.7566 2.0192 38 1 2.7505 0.6969 3.4399 39 1 6.8120 -2.7900 2.5789 40 1 5.4599 -2.8893 3.7376 41 1 7.6528 -2.2340 4.8091 42 1 6.3670 -1.0227 5.0298 43 1 7.2475 0.8094 5.8632 44 1 8.8501 1.7904 7.4526 45 1 11.2684 1.5965 7.0465 46 1 12.0962 0.4295 5.0439 47 1 10.7427 -1.6371 3.3471 48 1 6.3889 1.0017 3.7567 49 1 7.6917 1.3080 2.5824 50 1 6.8377 -0.4474 1.1062 51 1 5.4988 0.6593 1.5026 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602870077.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:46 Heat of formation + Delta-G solvation = -46.380609 kcal Electronic energy + Delta-G solvation = -31359.861976 eV Core-core repulsion = 27259.003982 eV Total energy + Delta-G solvation = -4100.857994 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.70156 -40.77406 -38.83680 -37.72675 -37.37884 -35.66669 -34.89126 -32.77928 -31.83638 -31.16663 -30.50411 -28.61382 -27.68407 -27.24933 -25.32614 -24.40885 -23.72405 -22.86615 -22.26210 -21.72066 -19.77792 -19.29394 -18.52207 -18.13888 -17.41478 -17.22523 -16.75456 -16.69336 -16.44162 -16.36227 -16.04360 -15.78700 -15.36106 -15.24260 -15.11247 -14.92099 -14.73642 -14.39673 -14.18701 -13.71528 -13.44065 -13.34491 -13.27697 -13.16710 -13.01995 -12.85967 -12.65768 -12.64972 -12.47666 -12.41869 -12.38758 -12.27259 -12.22080 -12.07975 -11.90175 -11.40200 -11.20598 -10.62489 -10.48586 -9.87460 -9.82974 -9.49724 -9.40239 -8.99690 -8.08467 -6.19633 0.25207 0.33415 1.41382 1.43168 1.50974 1.67242 1.90946 2.43735 2.63372 2.70816 3.17708 3.39481 3.43835 3.69199 3.79402 3.91517 3.98948 4.09492 4.13528 4.14204 4.18192 4.22070 4.24516 4.43930 4.46367 4.53370 4.59802 4.64029 4.66155 4.75023 4.81044 4.82267 4.86110 4.94859 4.96668 4.99292 5.07533 5.13486 5.35939 5.40263 5.43010 5.51472 5.53527 5.70617 5.78949 5.81838 5.83983 6.21091 6.29470 6.34676 6.50674 6.90821 6.92307 6.97395 7.25357 7.49559 8.95253 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016624 B = 0.002454 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.881674 B =11405.654614 C =11986.827825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.222 3.778 3 H -0.012 1.012 4 C -0.512 4.512 5 H 0.041 0.959 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.952 3.048 9 H -0.280 1.280 10 H -0.280 1.280 11 H -0.272 1.272 12 N -0.677 5.677 13 C 0.075 3.925 14 H 0.090 0.910 15 C -0.161 4.161 16 C 0.527 3.473 17 O -0.567 6.567 18 N -0.614 5.614 19 C 0.118 3.882 20 C 0.060 3.940 21 N -0.496 5.496 22 C 0.045 3.955 23 C -0.140 4.140 24 C -0.124 4.124 25 C -0.103 4.103 26 C -0.148 4.148 27 C 0.119 3.881 28 O -0.500 6.500 29 C 0.057 3.943 30 C 0.109 3.891 31 H 0.027 0.973 32 H 0.033 0.967 33 H 0.068 0.932 34 H 0.262 0.738 35 H 0.331 0.669 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.039 0.961 43 H 0.122 0.878 44 H 0.143 0.857 45 H 0.152 0.848 46 H 0.145 0.855 47 H 0.403 0.597 48 H 0.047 0.953 49 H 0.094 0.906 50 H 0.077 0.923 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.569 2.777 19.967 29.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.114 3.886 3 H 0.005 0.995 4 C -0.551 4.551 5 H 0.059 0.941 6 C -0.183 4.183 7 N -0.557 5.557 8 Si 0.778 3.222 9 H -0.205 1.205 10 H -0.205 1.205 11 H -0.197 1.197 12 N -0.308 5.308 13 C -0.039 4.039 14 H 0.108 0.892 15 C -0.220 4.220 16 C 0.316 3.684 17 O -0.445 6.445 18 N -0.349 5.349 19 C -0.005 4.005 20 C -0.068 4.068 21 N -0.218 5.218 22 C -0.049 4.049 23 C -0.160 4.160 24 C -0.143 4.143 25 C -0.121 4.121 26 C -0.167 4.167 27 C 0.074 3.926 28 O -0.312 6.312 29 C -0.070 4.070 30 C -0.014 4.014 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.149 0.851 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.119 0.881 42 H 0.058 0.942 43 H 0.140 0.860 44 H 0.161 0.839 45 H 0.170 0.830 46 H 0.163 0.837 47 H 0.262 0.738 48 H 0.065 0.935 49 H 0.112 0.888 50 H 0.095 0.905 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 21.608 2.128 19.028 28.870 hybrid contribution -0.740 0.223 -0.057 0.774 sum 20.868 2.350 18.971 28.300 Atomic orbital electron populations 1.21792 0.97722 0.99239 1.00581 1.18968 0.91897 0.90841 0.86864 0.99457 1.21339 1.30754 1.11737 0.91259 0.94073 1.25595 0.95518 0.95798 1.01425 1.69961 1.37707 1.23941 1.24072 0.85712 0.78825 0.78566 0.79110 1.20533 1.20521 1.19717 1.60175 1.02092 1.61118 1.07450 1.21378 0.92579 0.91885 0.98047 0.89214 1.22340 1.03760 0.96775 0.99148 1.20985 0.81820 0.87266 0.78378 1.90595 1.68362 1.34030 1.51491 1.48194 1.06173 1.26521 1.53994 1.21676 0.94351 0.90659 0.93807 1.22455 0.94774 0.94831 0.94701 1.59479 1.17560 1.14146 1.30651 1.19272 0.92307 1.00350 0.92976 1.21706 1.00550 0.98721 0.95032 1.21342 0.93314 0.99756 0.99841 1.21409 0.95963 0.97718 0.97013 1.21647 1.00627 1.00311 0.94103 1.18523 0.89578 0.97203 0.87316 1.84784 1.86729 1.26904 1.32780 1.22457 0.95089 0.93168 0.96257 1.22007 0.94789 0.88599 0.95966 0.95336 0.94789 0.91368 0.92864 0.85130 0.89690 0.91786 0.91955 0.90569 0.89939 0.88095 0.94241 0.86023 0.83896 0.83037 0.83733 0.73834 0.93514 0.88780 0.90459 0.88475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.62 8.95 71.98 0.64 -5.97 16 2 C 0.22 11.26 2.40 44.17 0.11 11.36 16 3 H -0.01 -0.64 7.32 -2.39 -0.02 -0.66 16 4 C -0.51 -29.02 8.59 25.60 0.22 -28.80 16 5 H 0.04 2.44 7.81 -2.91 -0.02 2.42 16 6 C 0.02 0.85 5.30 84.66 0.45 1.30 16 7 N -0.92 -52.28 11.31 21.45 0.24 -52.04 16 8 Si 0.95 44.69 29.54 68.60 2.03 46.72 16 9 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 12 N -0.68 -30.41 5.59 -477.16 -2.67 -33.08 16 13 C 0.08 2.80 1.92 44.17 0.08 2.89 16 14 H 0.09 3.60 6.50 -2.38 -0.02 3.59 16 15 C -0.16 -4.65 8.87 71.98 0.64 -4.01 16 16 C 0.53 19.40 6.99 87.66 0.61 20.02 16 17 O -0.57 -25.08 15.97 -3.01 -0.05 -25.13 16 18 N -0.61 -17.52 3.01 -817.92 -2.46 -19.98 16 19 C 0.12 2.86 6.59 86.35 0.57 3.43 16 20 C 0.06 1.12 5.25 86.39 0.45 1.57 16 21 N -0.50 -9.47 4.35 -693.82 -3.02 -12.49 16 22 C 0.05 0.79 4.68 38.22 0.18 0.97 16 23 C -0.14 -2.14 8.73 22.38 0.20 -1.95 16 24 C -0.12 -1.47 10.04 22.27 0.22 -1.25 16 25 C -0.10 -1.09 10.04 22.29 0.22 -0.87 16 26 C -0.15 -1.91 9.98 22.35 0.22 -1.69 16 27 C 0.12 2.00 6.72 22.59 0.15 2.15 16 28 O -0.50 -8.49 13.25 -93.65 -1.24 -9.73 16 29 C 0.06 1.12 5.31 86.38 0.46 1.58 16 30 C 0.11 2.58 5.94 86.35 0.51 3.09 16 31 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.03 1.42 8.13 -2.39 -0.02 1.41 16 33 H 0.07 3.66 6.04 -2.39 -0.01 3.65 16 34 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 35 H 0.33 13.90 8.04 -89.69 -0.72 13.18 16 36 H 0.08 1.95 6.56 -2.39 -0.02 1.93 16 37 H 0.06 1.94 7.63 -2.38 -0.02 1.93 16 38 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.08 2.25 7.09 -2.39 -0.02 2.23 16 41 H 0.10 1.56 8.09 -2.39 -0.02 1.54 16 42 H 0.04 0.77 7.40 -2.39 -0.02 0.75 16 43 H 0.12 1.82 7.18 -2.91 -0.02 1.80 16 44 H 0.14 1.10 8.06 -2.91 -0.02 1.07 16 45 H 0.15 0.79 8.06 -2.91 -0.02 0.77 16 46 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 47 H 0.40 3.66 9.07 -74.06 -0.67 2.99 16 48 H 0.05 0.88 7.62 -2.39 -0.02 0.86 16 49 H 0.09 1.76 8.09 -2.39 -0.02 1.74 16 50 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 51 H 0.10 2.30 4.65 -2.39 -0.01 2.29 16 Total: -1.00 -71.39 402.91 -1.66 -73.05 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: -0.44 Total: 28.87 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 5.95 Total: 3.82 kcal Atomic # 7 Polarization: -109.69 SS G_CDS: -7.91 Total: -117.60 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -1.29 Total: -34.86 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -71.39 -1.66 -73.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870077.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.668 kcal (2) G-P(sol) polarization free energy of solvation -71.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds