Wall clock time and date at job start Wed Apr 1 2020 05:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47118 * 2 1 4 4 C 1.53000 * 109.47127 * 239.99655 * 2 1 3 5 5 N 1.46899 * 109.47081 * 64.99982 * 4 2 1 6 6 C 1.46904 * 111.00191 * 66.04387 * 5 4 2 7 7 C 1.46897 * 111.00145 * 189.99852 * 5 4 2 8 8 C 1.53001 * 109.47142 * 119.99543 * 2 1 3 9 9 H 1.08999 * 109.69873 * 180.30541 * 8 2 1 10 10 C 1.53189 * 109.58529 * 59.95222 * 8 2 1 11 11 C 1.53044 * 109.31601 * 185.57613 * 10 8 2 12 12 C 1.53347 * 109.60513 * 61.36748 * 11 10 8 13 13 C 1.53194 * 109.15275 * 298.71705 * 12 11 10 14 14 N 1.46923 * 108.89045 * 54.58090 * 13 12 11 15 15 S 1.65601 * 120.63237 * 126.34485 * 14 13 12 16 16 O 1.42108 * 106.40202 * 163.20012 * 15 14 13 17 17 O 1.42101 * 106.40054 * 296.11877 * 15 14 13 18 18 N 1.65600 * 107.21966 * 49.65960 * 15 14 13 19 19 C 1.46506 * 119.99864 * 84.05603 * 18 15 14 20 20 C 1.46494 * 119.99824 * 264.06183 * 18 15 14 21 21 C 1.50703 * 109.47169 * 95.00135 * 20 18 15 22 22 H 1.07994 * 120.00506 * 359.97438 * 21 20 18 23 23 C 1.37881 * 119.99738 * 179.97438 * 21 20 18 24 24 N 1.31512 * 120.00279 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99688 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47027 * 60.00367 * 25 23 21 27 27 H 1.48507 * 109.46814 * 180.02562 * 25 23 21 28 28 H 1.48495 * 109.47164 * 299.99870 * 25 23 21 29 29 H 1.09005 * 109.47175 * 302.43424 * 1 2 3 30 30 H 1.08996 * 109.47378 * 62.44187 * 1 2 3 31 31 H 1.09006 * 109.46908 * 182.44071 * 1 2 3 32 32 H 1.09002 * 109.47187 * 184.99641 * 4 2 1 33 33 H 1.08998 * 109.47266 * 305.00139 * 4 2 1 34 34 H 1.09000 * 109.46894 * 59.99677 * 6 5 4 35 35 H 1.08994 * 109.47443 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.47133 * 300.00275 * 6 5 4 37 37 H 1.08998 * 109.46897 * 60.00518 * 7 5 4 38 38 H 1.09009 * 109.47254 * 179.97438 * 7 5 4 39 39 H 1.08999 * 109.47193 * 299.99974 * 7 5 4 40 40 H 1.09005 * 109.49909 * 305.52884 * 10 8 2 41 41 H 1.09001 * 109.50006 * 65.62584 * 10 8 2 42 42 H 1.08991 * 109.46577 * 181.38520 * 11 10 8 43 43 H 1.09005 * 109.45605 * 301.34838 * 11 10 8 44 44 H 1.09002 * 109.68351 * 178.74708 * 12 11 10 45 45 H 1.09001 * 109.47288 * 58.55569 * 12 11 10 46 46 H 1.08994 * 109.58464 * 294.71382 * 13 12 11 47 47 H 1.09003 * 109.58251 * 174.43786 * 13 12 11 48 48 H 1.09002 * 109.46714 * 94.96374 * 19 18 15 49 49 H 1.09004 * 109.47017 * 214.96168 * 19 18 15 50 50 H 1.09001 * 109.47173 * 334.96178 * 19 18 15 51 51 H 1.09005 * 109.47145 * 214.99768 * 20 18 15 52 52 H 1.08994 * 109.47322 * 334.99666 * 20 18 15 53 53 H 0.96998 * 120.00288 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 1.6513 0.0373 -2.4456 6 6 2.3340 1.3373 -2.4895 7 6 1.9124 -0.7359 -3.6671 8 6 2.0399 -0.7212 1.2493 9 1 3.1299 -0.7186 1.2558 10 6 1.5298 -2.1656 1.2527 11 6 1.9256 -2.8392 2.5687 12 6 1.2776 -2.0953 3.7427 13 6 1.7857 -0.6502 3.7639 14 7 1.5386 -0.0398 2.4506 15 16 0.7114 1.3895 2.3266 16 8 0.9810 1.8977 1.0272 17 8 -0.6024 1.1354 2.8046 18 7 1.4013 2.4495 3.3957 19 6 2.5915 3.2105 3.0077 20 6 0.8214 2.6260 4.7293 21 6 1.5356 1.7321 5.7100 22 1 2.3406 1.0957 5.3736 23 6 1.1612 1.7266 7.0370 24 7 0.1812 2.5019 7.4470 25 14 2.0461 0.6180 8.2526 26 1 3.4875 0.9732 8.2879 27 1 1.4583 0.7971 9.6045 28 1 1.8954 -0.7980 7.8315 29 1 -0.3634 0.5512 0.8674 30 1 -0.3634 0.4754 -0.9110 31 1 -0.3633 -1.0268 0.0438 32 1 3.1263 -0.7995 -1.2056 33 1 1.6053 -1.7198 -1.2951 34 1 3.4125 1.1808 -2.5099 35 1 2.0280 1.8784 -3.3848 36 1 2.0677 1.9175 -1.6060 37 1 1.3396 -1.6628 -3.6397 38 1 1.6152 -0.1512 -4.5377 39 1 2.9756 -0.9675 -3.7302 40 1 0.4441 -2.1683 1.1547 41 1 1.9721 -2.7097 0.4181 42 1 1.5851 -3.8746 2.5635 43 1 3.0099 -2.8141 2.6776 44 1 1.5406 -2.5873 4.6791 45 1 0.1944 -2.0984 3.6214 46 1 2.8548 -0.6419 3.9756 47 1 1.2565 -0.0882 4.5335 48 1 2.2909 4.1887 2.6324 49 1 3.2401 3.3375 3.8746 50 1 3.1291 2.6715 2.2276 51 1 0.9312 3.6655 5.0386 52 1 -0.2364 2.3647 4.7031 53 1 -0.0824 2.4978 8.3805 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603391494.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:00 Heat of formation + Delta-G solvation = -51.021642 kcal Electronic energy + Delta-G solvation = -32747.055018 eV Core-core repulsion = 28781.439725 eV Total energy + Delta-G solvation = -3965.615293 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.66219 -38.55594 -38.02882 -37.30451 -37.09991 -34.63243 -34.44245 -33.25646 -30.44639 -29.64015 -28.37448 -28.05659 -26.77161 -25.60334 -24.83143 -24.18252 -22.95277 -21.52048 -20.83136 -19.76224 -18.79026 -18.57366 -17.58501 -17.20761 -16.90442 -16.57474 -16.17973 -16.12592 -15.55678 -15.50264 -15.25061 -15.16212 -14.90531 -14.82082 -14.61960 -14.40020 -13.95756 -13.79916 -13.47725 -13.39089 -13.25622 -13.13787 -13.06205 -12.94099 -12.88197 -12.65803 -12.61642 -12.53999 -12.44465 -12.41451 -12.17109 -12.02609 -11.85589 -11.80635 -11.77918 -11.58562 -11.23179 -11.13765 -10.56955 -10.45537 -9.80962 -9.76867 -9.14772 -8.17347 -6.31360 -0.23493 1.45016 1.47249 1.54318 2.02808 2.42670 2.55959 3.08061 3.13313 3.55280 3.68829 3.83479 3.93502 4.03367 4.10970 4.16054 4.30155 4.32431 4.40317 4.43796 4.48798 4.53798 4.62716 4.67218 4.69804 4.77141 4.79237 4.85012 4.88923 4.90606 4.93056 4.97331 5.01509 5.05300 5.08410 5.11237 5.15646 5.22510 5.23163 5.28802 5.32250 5.44243 5.49969 5.56768 5.69427 5.73664 5.81077 5.99942 6.07356 6.18343 6.27547 6.78914 7.37744 8.91111 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016703 B = 0.004193 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.915530 B = 6676.012823 C = 7608.293114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.136 4.136 3 H 0.137 0.863 4 C 0.072 3.928 5 N -0.563 5.563 6 C 0.020 3.980 7 C 0.026 3.974 8 C 0.158 3.842 9 H 0.092 0.908 10 C -0.129 4.129 11 C -0.108 4.108 12 C -0.134 4.134 13 C 0.104 3.896 14 N -0.997 5.997 15 S 2.797 3.203 16 O -0.985 6.985 17 O -1.031 7.031 18 N -1.010 6.010 19 C 0.101 3.899 20 C 0.255 3.745 21 C -0.548 4.548 22 H 0.087 0.913 23 C 0.010 3.990 24 N -0.930 5.930 25 Si 0.957 3.043 26 H -0.262 1.262 27 H -0.290 1.290 28 H -0.258 1.258 29 H -0.013 1.013 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.032 0.968 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.031 0.969 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.046 0.954 46 H 0.077 0.923 47 H 0.084 0.916 48 H 0.054 0.946 49 H 0.072 0.928 50 H 0.080 0.920 51 H 0.018 0.982 52 H 0.011 0.989 53 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.763 -10.245 -17.088 22.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.157 4.157 3 H 0.154 0.846 4 C -0.056 4.056 5 N -0.287 5.287 6 C -0.128 4.128 7 C -0.122 4.122 8 C 0.052 3.948 9 H 0.110 0.890 10 C -0.168 4.168 11 C -0.146 4.146 12 C -0.173 4.173 13 C -0.020 4.020 14 N -0.839 5.839 15 S 2.811 3.189 16 O -0.969 6.969 17 O -1.015 7.015 18 N -0.850 5.850 19 C -0.044 4.044 20 C 0.131 3.869 21 C -0.586 4.586 22 H 0.105 0.895 23 C -0.189 4.189 24 N -0.569 5.569 25 Si 0.781 3.219 26 H -0.186 1.186 27 H -0.216 1.216 28 H -0.182 1.182 29 H 0.006 0.994 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.051 0.949 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.075 0.925 41 H 0.119 0.881 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.065 0.935 46 H 0.095 0.905 47 H 0.102 0.898 48 H 0.073 0.927 49 H 0.090 0.910 50 H 0.099 0.901 51 H 0.036 0.964 52 H 0.029 0.971 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.413 -9.840 -17.450 21.728 hybrid contribution 0.732 -0.027 1.477 1.649 sum 9.145 -9.867 -15.973 20.883 Atomic orbital electron populations 1.22066 0.96468 1.00224 0.99743 1.22548 0.95768 1.03698 0.93663 0.84596 1.22077 0.98347 0.96939 0.88262 1.61847 1.59134 1.04718 1.02996 1.22446 0.96193 0.91347 1.02847 1.22404 0.99585 0.98520 0.91648 1.21264 0.99037 0.92683 0.81835 0.88981 1.22082 1.01479 0.94243 0.99006 1.21505 1.01068 0.98963 0.93027 1.21953 1.00145 0.94993 1.00249 1.21918 1.01756 0.95342 0.83028 1.57874 1.74595 1.38720 1.12700 1.01838 0.72696 0.73089 0.71306 1.93549 1.85434 1.81783 1.36167 1.93506 1.39782 1.85629 1.82547 1.57545 1.42170 1.56709 1.28625 1.21421 0.86401 0.95848 1.00744 1.18780 0.92898 0.97075 0.78173 1.21926 1.18825 1.24556 0.93327 0.89541 1.25896 0.95595 0.97030 1.00409 1.70079 1.29563 1.40150 1.17110 0.85618 0.79054 0.79843 0.77421 1.18641 1.21570 1.18211 0.99418 0.90985 0.92104 0.93273 0.89545 0.94909 0.91035 0.91951 0.90852 0.91021 0.95005 0.92469 0.88051 0.90346 0.90470 0.90176 0.93541 0.90481 0.89843 0.92709 0.90965 0.90147 0.96416 0.97135 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 7.58 71.98 0.55 -3.57 16 2 C -0.14 -3.65 1.54 -10.80 -0.02 -3.66 16 3 H 0.14 4.18 3.36 -66.21 -0.22 3.96 16 4 C 0.07 1.44 3.85 86.30 0.33 1.77 16 5 N -0.56 -11.78 4.43 -948.85 -4.20 -15.99 16 6 C 0.02 0.41 9.33 127.69 1.19 1.60 16 7 C 0.03 0.40 9.57 127.69 1.22 1.62 16 8 C 0.16 4.02 2.73 44.97 0.12 4.14 16 9 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 10 C -0.13 -2.74 4.65 30.67 0.14 -2.60 16 11 C -0.11 -2.24 5.89 30.72 0.18 -2.05 16 12 C -0.13 -3.84 6.11 30.78 0.19 -3.65 16 13 C 0.10 3.56 5.45 86.36 0.47 4.03 16 14 N -1.00 -33.56 3.24 -490.79 -1.59 -35.15 16 15 S 2.80 116.50 3.71 -56.49 -0.21 116.29 16 16 O -0.99 -38.14 10.71 -128.00 -1.37 -39.51 16 17 O -1.03 -53.36 15.53 -128.00 -1.99 -55.35 16 18 N -1.01 -43.44 3.13 -543.21 -1.70 -45.15 16 19 C 0.10 3.43 10.37 127.77 1.32 4.76 16 20 C 0.25 13.38 5.37 85.64 0.46 13.84 16 21 C -0.55 -28.43 7.18 25.60 0.18 -28.25 16 22 H 0.09 4.09 6.01 -2.91 -0.02 4.07 16 23 C 0.01 0.56 5.46 84.66 0.46 1.02 16 24 N -0.93 -54.49 13.29 21.45 0.28 -54.21 16 25 Si 0.96 41.02 29.54 68.60 2.03 43.05 16 26 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 27 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 28 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 29 H -0.01 -0.51 3.24 -19.85 -0.06 -0.57 16 30 H 0.07 2.33 7.69 -2.39 -0.02 2.31 16 31 H 0.06 1.75 6.19 -2.38 -0.01 1.73 16 32 H 0.05 0.84 8.12 -2.39 -0.02 0.82 16 33 H 0.09 1.48 6.77 -2.39 -0.02 1.47 16 34 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.07 1.32 8.12 -2.39 -0.02 1.30 16 36 H 0.06 1.59 6.37 -2.39 -0.02 1.58 16 37 H 0.07 0.99 8.12 -2.39 -0.02 0.97 16 38 H 0.07 0.99 8.12 -2.38 -0.02 0.97 16 39 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.06 1.41 6.12 -2.38 -0.01 1.40 16 41 H 0.10 1.51 6.88 -2.39 -0.02 1.49 16 42 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 44 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.08 2.31 8.09 -2.39 -0.02 2.29 16 47 H 0.08 3.57 4.61 -2.39 -0.01 3.56 16 48 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.07 2.41 8.11 -2.38 -0.02 2.39 16 50 H 0.08 2.26 7.77 -2.39 -0.02 2.24 16 51 H 0.02 0.98 8.11 -2.38 -0.02 0.96 16 52 H 0.01 0.64 6.87 -2.39 -0.02 0.62 16 53 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -68.72 392.10 -1.33 -70.05 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.61 Total: 26.97 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: 6.81 Total: -11.01 kcal Atomic # 7 Polarization: -143.28 SS G_CDS: -7.21 Total: -150.49 kcal Atomic # 8 Polarization: -91.50 SS G_CDS: -3.36 Total: -94.86 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Atomic # 16 Polarization: 116.50 SS G_CDS: -0.21 Total: 116.29 kcal Total: -68.72 -1.33 -70.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603391494.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.029 kcal (2) G-P(sol) polarization free energy of solvation -68.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds