Wall clock time and date at job start Wed Apr 1 2020 05:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47205 * 2 1 4 4 C 1.53006 * 109.46799 * 120.00224 * 2 1 3 5 5 N 1.46899 * 109.46542 * 297.36206 * 4 2 1 6 6 C 1.46900 * 110.99848 * 164.39849 * 5 4 2 7 7 C 1.46896 * 111.00162 * 288.35179 * 5 4 2 8 8 C 1.52998 * 109.46837 * 239.99507 * 2 1 3 9 9 H 1.09004 * 109.58438 * 179.87322 * 8 2 1 10 10 C 1.53191 * 109.59367 * 300.15456 * 8 2 1 11 11 C 1.53034 * 109.31705 * 174.42534 * 10 8 2 12 12 C 1.53049 * 109.53603 * 298.63313 * 11 10 8 13 13 C 1.53189 * 109.31069 * 61.36460 * 12 11 10 14 14 N 1.46928 * 108.77937 * 305.36565 * 13 12 11 15 15 S 1.65594 * 120.63223 * 233.58838 * 14 13 12 16 16 O 1.42104 * 106.40427 * 67.97135 * 15 14 13 17 17 O 1.42095 * 106.40371 * 200.89591 * 15 14 13 18 18 N 1.65605 * 107.21595 * 314.43579 * 15 14 13 19 19 C 1.46502 * 120.00129 * 89.99847 * 18 15 14 20 20 C 1.46495 * 119.99852 * 269.99728 * 18 15 14 21 21 C 1.50698 * 109.47189 * 95.00338 * 20 18 15 22 22 H 1.08001 * 120.00358 * 359.97438 * 21 20 18 23 23 C 1.37879 * 120.00331 * 180.02562 * 21 20 18 24 24 N 1.31512 * 119.99994 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00043 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47044 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47419 * 119.99691 * 25 23 21 28 28 H 1.48501 * 109.46954 * 239.99403 * 25 23 21 29 29 H 1.09004 * 109.47100 * 313.14986 * 1 2 3 30 30 H 1.09006 * 109.46663 * 73.13871 * 1 2 3 31 31 H 1.08998 * 109.47572 * 193.14182 * 1 2 3 32 32 H 1.08993 * 109.47020 * 57.35884 * 4 2 1 33 33 H 1.08991 * 109.46935 * 177.36392 * 4 2 1 34 34 H 1.09004 * 109.46721 * 64.86960 * 6 5 4 35 35 H 1.08995 * 109.47390 * 184.86633 * 6 5 4 36 36 H 1.08999 * 109.47394 * 304.87651 * 6 5 4 37 37 H 1.09003 * 109.47304 * 60.00300 * 7 5 4 38 38 H 1.09000 * 109.47430 * 180.02562 * 7 5 4 39 39 H 1.09001 * 109.47342 * 300.00675 * 7 5 4 40 40 H 1.09000 * 109.49419 * 294.37862 * 10 8 2 41 41 H 1.09004 * 109.49604 * 54.43226 * 10 8 2 42 42 H 1.08997 * 109.46548 * 58.65227 * 11 10 8 43 43 H 1.09006 * 109.46170 * 178.63226 * 11 10 8 44 44 H 1.08998 * 109.49748 * 181.31894 * 12 11 10 45 45 H 1.08996 * 109.49827 * 301.38293 * 12 11 10 46 46 H 1.09003 * 109.58452 * 65.15105 * 13 12 11 47 47 H 1.09001 * 109.58575 * 185.57411 * 13 12 11 48 48 H 1.09004 * 109.46886 * 90.00217 * 19 18 15 49 49 H 1.08992 * 109.46989 * 209.99812 * 19 18 15 50 50 H 1.09000 * 109.47274 * 330.00377 * 19 18 15 51 51 H 1.09002 * 109.47459 * 214.99766 * 20 18 15 52 52 H 1.08997 * 109.47757 * 335.00297 * 20 18 15 53 53 H 0.96997 * 120.00303 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6029 0.0070 2.4478 6 6 1.7433 -0.8253 3.6500 7 6 2.3382 1.2704 2.5934 8 6 2.0400 -0.7214 -1.2492 9 1 3.1300 -0.7205 -1.2522 10 6 1.5277 -2.1651 -1.2538 11 6 1.9236 -2.8385 -2.5697 12 6 1.2783 -2.0933 -3.7405 13 6 1.7878 -0.6488 -3.7641 14 7 1.5407 -0.0385 -2.4505 15 16 0.7155 1.3918 -2.3265 16 8 -0.6237 1.1174 -2.7144 17 8 1.0611 1.9463 -1.0647 18 7 1.3338 2.4153 -3.4722 19 6 0.7520 2.4472 -4.8164 20 6 2.4624 3.2888 -3.1416 21 6 3.7498 2.6252 -3.5578 22 1 3.7295 1.6502 -4.0217 23 6 4.9540 3.2624 -3.3453 24 7 4.9789 4.4496 -2.7799 25 14 6.5498 2.4402 -3.8618 26 1 6.2513 1.1191 -4.4708 27 1 7.2493 3.2961 -4.8534 28 1 7.4173 2.2515 -2.6714 29 1 -0.3633 0.7029 0.7498 30 1 -0.3633 0.2981 -0.9836 31 1 -0.3634 -1.0007 0.2336 32 1 1.6385 -1.7343 1.2732 33 1 3.1289 -0.7625 1.2260 34 1 2.7983 -1.0375 3.8238 35 1 1.3331 -0.2948 4.5092 36 1 1.2029 -1.7614 3.5091 37 1 2.1605 1.8971 1.7194 38 1 1.9955 1.7892 3.4886 39 1 3.4046 1.0622 2.6803 40 1 1.9685 -2.7101 -0.4191 41 1 0.4420 -2.1661 -1.1561 42 1 3.0079 -2.8151 -2.6779 43 1 1.5813 -3.8734 -2.5655 44 1 1.5416 -2.5873 -4.6757 45 1 0.1950 -2.0955 -3.6204 46 1 2.8572 -0.6420 -3.9747 47 1 1.2581 -0.0870 -4.5335 48 1 -0.0473 3.1877 -4.8489 49 1 1.5229 2.7128 -5.5397 50 1 0.3474 1.4650 -5.0607 51 1 2.3551 4.2365 -3.6693 52 1 2.4784 3.4709 -2.0671 53 1 5.8260 4.8980 -2.6307 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603391495.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:03 Heat of formation + Delta-G solvation = -60.673809 kcal Electronic energy + Delta-G solvation = -32885.423399 eV Core-core repulsion = 28919.389556 eV Total energy + Delta-G solvation = -3966.033842 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.60770 -38.51983 -38.06449 -37.33908 -37.08885 -34.73255 -34.41363 -33.26892 -30.41758 -29.68418 -28.42333 -28.07916 -26.79461 -25.63690 -24.79126 -24.18099 -22.97314 -21.50175 -20.86300 -19.76098 -18.63299 -18.59849 -17.84800 -17.23559 -16.86360 -16.53113 -16.20764 -16.09734 -15.59051 -15.52180 -15.32945 -15.06086 -15.04813 -14.88824 -14.59975 -14.47177 -13.99247 -13.74586 -13.59329 -13.40710 -13.19592 -13.12518 -13.06694 -13.00879 -12.91254 -12.79706 -12.64052 -12.56680 -12.50178 -12.41689 -12.33720 -11.91503 -11.91412 -11.81856 -11.78866 -11.64932 -11.31089 -11.23778 -10.59684 -10.46798 -9.84891 -9.74288 -9.20978 -8.17275 -6.30686 -0.25221 1.40809 1.42340 1.53575 1.99099 2.41411 2.53126 3.04171 3.14621 3.53686 3.63691 3.81281 3.91743 3.97043 4.07549 4.12488 4.26798 4.29940 4.35402 4.38732 4.48975 4.52799 4.56109 4.61894 4.64095 4.66823 4.77678 4.81465 4.82434 4.85910 4.91531 4.93199 5.00202 5.04565 5.05086 5.09558 5.11817 5.18644 5.25411 5.26481 5.30962 5.41656 5.49037 5.57105 5.71102 5.74950 5.82579 5.94373 6.09684 6.11191 6.25313 6.80952 7.39187 8.91294 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009128 B = 0.005403 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3066.672836 B = 5180.781774 C = 5997.871928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.146 4.146 3 H 0.123 0.877 4 C 0.073 3.927 5 N -0.557 5.557 6 C 0.026 3.974 7 C 0.023 3.977 8 C 0.164 3.836 9 H 0.069 0.931 10 C -0.125 4.125 11 C -0.113 4.113 12 C -0.128 4.128 13 C 0.118 3.882 14 N -0.999 5.999 15 S 2.798 3.202 16 O -1.017 7.017 17 O -0.993 6.993 18 N -1.010 6.010 19 C 0.091 3.909 20 C 0.262 3.738 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.011 3.989 24 N -0.930 5.930 25 Si 0.958 3.042 26 H -0.257 1.257 27 H -0.280 1.280 28 H -0.284 1.284 29 H 0.058 0.942 30 H 0.003 0.997 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.036 0.964 34 H 0.027 0.973 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.051 0.949 38 H 0.076 0.924 39 H 0.026 0.974 40 H 0.094 0.906 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.061 0.939 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.054 0.946 49 H 0.079 0.921 50 H 0.075 0.925 51 H 0.017 0.983 52 H 0.020 0.980 53 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.016 -16.248 3.630 17.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.167 4.167 3 H 0.140 0.860 4 C -0.055 4.055 5 N -0.281 5.281 6 C -0.122 4.122 7 C -0.126 4.126 8 C 0.057 3.943 9 H 0.087 0.913 10 C -0.164 4.164 11 C -0.151 4.151 12 C -0.167 4.167 13 C -0.007 4.007 14 N -0.840 5.840 15 S 2.811 3.189 16 O -1.001 7.001 17 O -0.977 6.977 18 N -0.850 5.850 19 C -0.054 4.054 20 C 0.138 3.862 21 C -0.575 4.575 22 H 0.090 0.910 23 C -0.189 4.189 24 N -0.570 5.570 25 Si 0.783 3.217 26 H -0.180 1.180 27 H -0.206 1.206 28 H -0.210 1.210 29 H 0.077 0.923 30 H 0.021 0.979 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.054 0.946 34 H 0.046 0.954 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.044 0.956 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.103 0.897 44 H 0.112 0.888 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.073 0.927 49 H 0.098 0.902 50 H 0.093 0.907 51 H 0.035 0.965 52 H 0.038 0.962 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.132 -15.730 4.178 17.392 hybrid contribution 2.019 0.415 -0.465 2.113 sum -4.113 -15.315 3.712 16.287 Atomic orbital electron populations 1.21961 0.95481 1.02504 0.98538 1.22513 0.96472 1.03679 0.94002 0.86039 1.22093 0.97532 0.97373 0.88505 1.61861 1.57063 1.05535 1.03623 1.22439 0.99961 0.97866 0.91913 1.22392 0.95480 0.92311 1.02375 1.21058 0.98201 0.93022 0.81986 0.91301 1.22037 1.01753 0.93272 0.99317 1.21475 1.00811 0.99418 0.93360 1.21894 1.00650 0.93825 1.00332 1.21546 1.01463 0.95483 0.82166 1.57824 1.74521 1.38903 1.12754 1.01743 0.72726 0.72748 0.71690 1.93506 1.36508 1.85610 1.84440 1.93495 1.84129 1.79906 1.40217 1.57541 1.46806 1.54996 1.25660 1.21557 0.98387 1.02032 0.83441 1.18736 0.82633 0.89197 0.95590 1.21833 0.91292 1.04496 1.39913 0.91008 1.25805 1.02649 0.95355 0.95051 1.70075 1.27361 1.15428 1.44088 0.85501 0.79135 0.79163 0.77868 1.18018 1.20609 1.21022 0.92311 0.97850 0.90653 0.88638 0.94562 0.95395 0.90841 0.90177 0.92993 0.90521 0.95576 0.88792 0.91494 0.91570 0.89667 0.88808 0.92011 0.91357 0.90992 0.92734 0.90209 0.90651 0.96502 0.96214 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.29 6.79 71.98 0.49 -3.80 16 2 C -0.15 -4.77 1.61 -10.79 -0.02 -4.78 16 3 H 0.12 5.04 3.58 -63.14 -0.23 4.81 16 4 C 0.07 1.89 3.93 86.31 0.34 2.23 16 5 N -0.56 -14.70 4.58 -948.87 -4.34 -19.05 16 6 C 0.03 0.50 9.58 127.69 1.22 1.72 16 7 C 0.02 0.66 9.38 127.69 1.20 1.85 16 8 C 0.16 4.92 2.73 44.97 0.12 5.04 16 9 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 10 C -0.12 -2.72 4.65 30.67 0.14 -2.58 16 11 C -0.11 -2.13 5.88 30.62 0.18 -1.95 16 12 C -0.13 -2.74 6.08 30.67 0.19 -2.55 16 13 C 0.12 3.38 6.43 86.36 0.55 3.94 16 14 N -1.00 -34.10 3.19 -490.76 -1.56 -35.67 16 15 S 2.80 116.41 3.78 -56.49 -0.21 116.20 16 16 O -1.02 -44.09 15.70 -128.00 -2.01 -46.10 16 17 O -0.99 -46.03 10.67 -128.00 -1.37 -47.40 16 18 N -1.01 -43.48 3.02 -543.24 -1.64 -45.12 16 19 C 0.09 3.20 9.85 127.77 1.26 4.46 16 20 C 0.26 13.53 5.41 85.63 0.46 13.99 16 21 C -0.54 -28.09 9.38 25.60 0.24 -27.85 16 22 H 0.07 3.55 7.81 -2.91 -0.02 3.52 16 23 C 0.01 0.57 5.46 84.66 0.46 1.03 16 24 N -0.93 -54.04 13.29 21.45 0.28 -53.76 16 25 Si 0.96 41.87 29.54 68.60 2.03 43.90 16 26 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 27 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 28 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 29 H 0.06 2.11 8.07 -2.38 -0.02 2.09 16 30 H 0.00 0.12 3.35 -18.60 -0.06 0.05 16 31 H 0.07 2.08 6.99 -2.39 -0.02 2.06 16 32 H 0.10 1.95 6.45 -2.39 -0.02 1.94 16 33 H 0.04 0.93 8.03 -2.39 -0.02 0.91 16 34 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 1.28 7.98 -2.39 -0.02 1.26 16 37 H 0.05 1.85 6.64 -2.39 -0.02 1.84 16 38 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.03 0.71 8.11 -2.39 -0.02 0.69 16 40 H 0.09 1.59 6.82 -2.39 -0.02 1.58 16 41 H 0.07 1.53 6.47 -2.38 -0.02 1.52 16 42 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 44 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 45 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.07 2.03 5.58 -2.39 -0.01 2.01 16 48 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 49 H 0.08 2.69 8.07 -2.39 -0.02 2.67 16 50 H 0.07 2.26 6.08 -2.39 -0.01 2.25 16 51 H 0.02 0.92 8.11 -2.39 -0.02 0.90 16 52 H 0.02 1.14 6.91 -2.39 -0.02 1.13 16 53 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -67.82 397.04 -1.38 -69.20 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.61 Total: 27.05 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: 6.84 Total: -9.25 kcal Atomic # 7 Polarization: -146.33 SS G_CDS: -7.26 Total: -153.59 kcal Atomic # 8 Polarization: -90.12 SS G_CDS: -3.38 Total: -93.50 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 16 Polarization: 116.41 SS G_CDS: -0.21 Total: 116.20 kcal Total: -67.82 -1.38 -69.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603391495.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.526 kcal (2) G-P(sol) polarization free energy of solvation -67.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds