Wall clock time and date at job start Wed Apr 1 2020 04:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47814 * 2 1 4 4 N 1.46499 * 109.46908 * 120.00573 * 2 1 3 5 5 C 1.34779 * 119.99707 * 274.99262 * 4 2 1 6 6 O 1.21578 * 120.00007 * 0.02562 * 5 4 2 7 7 N 1.34782 * 119.99815 * 180.02562 * 5 4 2 8 8 C 1.46497 * 120.00016 * 180.02562 * 7 5 4 9 9 C 1.50694 * 109.47115 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00563 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99902 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99913 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 C 1.53002 * 109.46856 * 240.00145 * 2 1 3 18 18 H 1.09003 * 109.51023 * 65.00411 * 17 2 1 19 19 C 1.53095 * 109.50821 * 185.09143 * 17 2 1 20 20 N 1.47010 * 109.26162 * 176.78378 * 19 17 2 21 21 C 1.46901 * 111.00294 * 177.60634 * 20 19 17 22 22 C 1.50698 * 109.47320 * 189.99803 * 21 20 19 23 23 C 1.38233 * 120.00113 * 269.72844 * 22 21 20 24 24 C 1.38237 * 119.99828 * 179.76530 * 23 22 21 25 25 C 1.38237 * 120.00057 * 0.50659 * 24 23 22 26 26 C 1.38233 * 119.99952 * 359.74671 * 25 24 23 27 27 C 1.38236 * 119.99911 * 0.02562 * 26 25 24 28 28 C 1.47013 * 110.75235 * 301.37875 * 20 19 17 29 29 C 1.53107 * 109.25204 * 58.61729 * 28 20 19 30 30 O 1.43014 * 109.29411 * 303.17202 * 29 28 20 31 31 H 1.09001 * 109.46615 * 300.00086 * 1 2 3 32 32 H 1.09004 * 109.46654 * 59.99696 * 1 2 3 33 33 H 1.08996 * 109.47829 * 179.97438 * 1 2 3 34 34 H 0.96997 * 120.00426 * 94.99500 * 4 2 1 35 35 H 0.97001 * 119.99765 * 0.02562 * 7 5 4 36 36 H 1.09007 * 109.47078 * 59.99547 * 8 7 5 37 37 H 1.09003 * 109.46733 * 300.00270 * 8 7 5 38 38 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 39 39 H 1.09005 * 109.50478 * 296.72160 * 19 17 2 40 40 H 1.09004 * 109.51142 * 56.80334 * 19 17 2 41 41 H 1.09007 * 109.47222 * 310.00249 * 21 20 19 42 42 H 1.09009 * 109.47274 * 69.99763 * 21 20 19 43 43 H 1.08004 * 120.00130 * 359.97438 * 23 22 21 44 44 H 1.07999 * 120.00005 * 180.22952 * 24 23 22 45 45 H 1.07994 * 120.00008 * 179.72406 * 25 24 23 46 46 H 1.08000 * 120.00348 * 179.97438 * 26 25 24 47 47 H 1.08005 * 120.00231 * 179.97438 * 27 26 25 48 48 H 1.08999 * 109.50625 * 178.54708 * 28 20 19 49 49 H 1.08997 * 109.50930 * 298.63964 * 28 20 19 50 50 H 1.08999 * 109.50874 * 63.08464 * 29 28 20 51 51 H 1.09005 * 109.50389 * 183.16961 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8576 1.1612 2.4118 7 7 2.5968 -0.6537 3.4574 8 6 2.7363 0.0769 4.7195 9 6 3.2528 -0.8552 5.7850 10 1 3.4564 -1.8886 5.5462 11 6 3.4645 -0.3889 7.0653 12 7 3.2161 0.8694 7.3563 13 14 4.1041 -1.5445 8.3862 14 1 2.9585 -2.1891 9.0771 15 1 4.9559 -2.5880 7.7610 16 1 4.9065 -0.7750 9.3708 17 6 2.0399 -0.7212 -1.2493 18 1 1.7519 -0.1587 -2.1374 19 6 3.5655 -0.8336 -1.1878 20 7 4.0430 -1.5945 -2.3516 21 6 5.5097 -1.6770 -2.3609 22 6 5.9726 -2.2425 -3.6788 23 6 6.1310 -3.6076 -3.8279 24 6 6.5510 -4.1266 -5.0383 25 6 6.8227 -3.2797 -6.0965 26 6 6.6694 -1.9141 -5.9459 27 6 6.2449 -1.3955 -4.7369 28 6 3.4398 -2.9348 -2.3809 29 6 1.9153 -2.8013 -2.4304 30 8 1.4716 -2.0323 -1.3093 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2489 -1.6319 1.1526 35 1 2.8281 -1.5947 3.4136 36 1 1.7654 0.4703 5.0209 37 1 3.4369 0.9013 4.5865 38 1 3.3647 1.1972 8.2571 39 1 4.0047 0.1639 -1.2000 40 1 3.8561 -1.3480 -0.2718 41 1 5.9306 -0.6808 -2.2250 42 1 5.8423 -2.3256 -1.5504 43 1 5.9233 -4.2690 -2.9997 44 1 6.6711 -5.1934 -5.1559 45 1 7.1551 -3.6848 -7.0408 46 1 6.8821 -1.2524 -6.7725 47 1 6.1255 -0.3286 -4.6190 48 1 3.7871 -3.4710 -3.2640 49 1 3.7288 -3.4837 -1.4846 50 1 1.6236 -2.2999 -3.3532 51 1 1.4619 -3.7920 -2.3955 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787358752.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:39 Heat of formation + Delta-G solvation = -46.326414 kcal Electronic energy + Delta-G solvation = -30509.488843 eV Core-core repulsion = 26408.633199 eV Total energy + Delta-G solvation = -4100.855644 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.46112 -39.53491 -38.82140 -36.28609 -35.23912 -33.97482 -32.38284 -32.04188 -31.36522 -31.09838 -29.70681 -28.06466 -26.91003 -24.95882 -24.33403 -22.90088 -22.78324 -21.76902 -20.92727 -20.60177 -19.88941 -18.16918 -17.16593 -16.87010 -16.57957 -16.01696 -15.81730 -15.69171 -15.28944 -14.98631 -14.92730 -14.71124 -14.59543 -14.36093 -14.23440 -13.75542 -13.61389 -13.29303 -13.21925 -12.86607 -12.84865 -12.53450 -12.27034 -11.96679 -11.93190 -11.76639 -11.66494 -11.60641 -11.36275 -11.27037 -10.95132 -10.93679 -10.84492 -10.66347 -10.27841 -9.84715 -9.35183 -9.33495 -9.23575 -9.14387 -8.77219 -8.69060 -8.56416 -7.71119 -6.13101 -4.19300 0.98550 1.07897 3.25958 3.26316 3.30883 3.33465 3.40831 3.55080 3.73546 4.02328 4.33101 4.35060 4.49263 4.59823 4.66568 4.68329 4.74051 4.80536 4.87969 4.97122 5.05522 5.14281 5.16816 5.19511 5.22878 5.30809 5.33035 5.38556 5.41411 5.54191 5.55951 5.63106 5.66664 5.71239 5.75163 5.90269 6.11583 6.14519 6.18370 6.27835 6.47236 6.57888 6.63145 6.68525 6.89826 7.02607 7.18516 7.56303 7.59709 7.61025 7.95658 8.09089 8.80101 8.99980 9.38065 9.52532 10.97120 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012164 B = 0.002172 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.239384 B =12889.814551 C =14235.495594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.174 3.826 3 H 0.098 0.902 4 N -0.749 5.749 5 C 0.694 3.306 6 O -0.602 6.602 7 N -0.731 5.731 8 C 0.268 3.732 9 C -0.541 4.541 10 H 0.062 0.938 11 C 0.063 3.937 12 N -0.885 5.885 13 Si 0.904 3.096 14 H -0.279 1.279 15 H -0.274 1.274 16 H -0.285 1.285 17 C 0.090 3.910 18 H 0.079 0.921 19 C 0.024 3.976 20 N -0.530 5.530 21 C 0.091 3.909 22 C -0.075 4.075 23 C -0.115 4.115 24 C -0.122 4.122 25 C -0.122 4.122 26 C -0.121 4.121 27 C -0.098 4.098 28 C 0.013 3.987 29 C 0.066 3.934 30 O -0.374 6.374 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.393 0.607 35 H 0.385 0.615 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.265 0.735 39 H 0.088 0.912 40 H 0.052 0.948 41 H 0.086 0.914 42 H 0.046 0.954 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.121 0.879 47 H 0.123 0.877 48 H 0.087 0.913 49 H 0.043 0.957 50 H 0.058 0.942 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.868 -9.824 -28.696 30.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.068 3.932 3 H 0.116 0.884 4 N -0.406 5.406 5 C 0.393 3.607 6 O -0.482 6.482 7 N -0.382 5.382 8 C 0.147 3.853 9 C -0.579 4.579 10 H 0.080 0.920 11 C -0.141 4.141 12 N -0.523 5.523 13 Si 0.731 3.269 14 H -0.205 1.205 15 H -0.198 1.198 16 H -0.210 1.210 17 C 0.031 3.969 18 H 0.097 0.903 19 C -0.104 4.104 20 N -0.255 5.255 21 C -0.036 4.036 22 C -0.076 4.076 23 C -0.133 4.133 24 C -0.140 4.140 25 C -0.140 4.140 26 C -0.139 4.139 27 C -0.117 4.117 28 C -0.115 4.115 29 C -0.011 4.011 30 O -0.293 6.293 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.227 0.773 35 H 0.217 0.783 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.075 0.925 39 H 0.107 0.893 40 H 0.070 0.930 41 H 0.105 0.895 42 H 0.065 0.935 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.141 0.859 48 H 0.106 0.894 49 H 0.062 0.938 50 H 0.076 0.924 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.337 -8.369 -28.699 30.080 hybrid contribution 1.082 -1.867 1.211 2.475 sum 4.419 -10.236 -27.488 29.663 Atomic orbital electron populations 1.22089 0.94945 1.02562 1.02086 1.20701 0.94637 0.96234 0.81639 0.88381 1.45197 1.73022 1.13446 1.08957 1.16158 0.78870 0.85264 0.80380 1.90860 1.57967 1.14657 1.84667 1.45717 1.68683 1.13545 1.10301 1.18955 0.97172 0.91938 0.77280 1.21232 1.45665 0.96500 0.94532 0.92028 1.24949 0.95323 0.95307 0.98501 1.69982 1.47491 1.14074 1.20719 0.86421 0.78851 0.80440 0.81199 1.20489 1.19840 1.21029 1.22503 0.91159 0.84756 0.98447 0.90342 1.22807 0.96139 0.99680 0.91787 1.62242 1.06118 1.15661 1.41476 1.21077 0.87573 1.01391 0.93553 1.19731 0.98899 0.93392 0.95555 1.21088 0.99880 0.94680 0.97697 1.21122 0.99809 0.99746 0.93284 1.21159 1.00298 0.93736 0.98842 1.21170 0.99850 0.95385 0.97539 1.21050 0.98215 0.99851 0.92543 1.22897 0.96146 0.90532 1.01944 1.22619 0.92463 0.96373 0.89679 1.88028 1.68063 1.26122 1.47045 0.91728 0.92358 0.91811 0.77330 0.78291 0.95791 0.95812 0.92502 0.89329 0.93012 0.89534 0.93531 0.86349 0.86159 0.86249 0.86101 0.85921 0.89434 0.93845 0.92409 0.88482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.29 37.16 0.35 -1.72 16 2 C 0.17 2.31 2.48 -67.93 -0.17 2.14 16 3 H 0.10 1.43 7.58 -51.93 -0.39 1.04 16 4 N -0.75 -11.46 4.27 -58.68 -0.25 -11.71 16 5 C 0.69 14.39 8.53 -86.91 -0.74 13.65 16 6 O -0.60 -14.98 16.01 5.30 0.08 -14.89 16 7 N -0.73 -15.91 5.55 -66.42 -0.37 -16.27 16 8 C 0.27 7.26 5.43 -5.20 -0.03 7.23 16 9 C -0.54 -14.89 9.28 -34.44 -0.32 -15.21 16 10 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 13 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 C 0.09 0.95 2.60 -26.68 -0.07 0.89 16 18 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 19 C 0.02 0.25 4.76 -3.71 -0.02 0.23 16 20 N -0.53 -4.88 4.72 -235.74 -1.11 -5.99 16 21 C 0.09 0.79 5.12 -4.98 -0.03 0.76 16 22 C -0.08 -0.63 4.89 -104.63 -0.51 -1.14 16 23 C -0.11 -0.89 7.95 -39.58 -0.31 -1.21 16 24 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 25 C -0.12 -0.85 10.05 -39.58 -0.40 -1.24 16 26 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 27 C -0.10 -0.79 9.70 -39.58 -0.38 -1.18 16 28 C 0.01 0.11 5.29 -3.71 -0.02 0.09 16 29 C 0.07 0.55 7.01 37.21 0.26 0.82 16 30 O -0.37 -4.01 9.33 -35.23 -0.33 -4.34 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.83 7.56 -51.93 -0.39 0.43 16 34 H 0.39 5.31 7.87 -40.82 -0.32 4.99 16 35 H 0.39 7.28 8.34 -40.82 -0.34 6.94 16 36 H 0.02 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 39 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 40 H 0.05 0.60 7.03 -51.93 -0.37 0.23 16 41 H 0.09 0.73 7.98 -51.93 -0.41 0.31 16 42 H 0.05 0.41 8.06 -51.92 -0.42 -0.01 16 43 H 0.12 0.81 8.02 -52.48 -0.42 0.39 16 44 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 45 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 46 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 47 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 48 H 0.09 0.69 6.03 -51.93 -0.31 0.37 16 49 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 51 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 411.77 15.07 6.21 6.21 Total: -1.00 -33.08 411.77 -11.75 -44.83 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -8.41 Total: 8.51 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -3.28 Total: 3.22 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: -0.99 Total: -59.58 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.24 Total: -19.23 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.08 -11.75 -44.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358752.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.497 kcal (2) G-P(sol) polarization free energy of solvation -33.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds