Wall clock time and date at job start Wed Apr 1 2020 04:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47814 * 2 1 4 4 N 1.46499 * 109.46908 * 120.00573 * 2 1 3 5 5 C 1.34779 * 119.99707 * 274.99262 * 4 2 1 6 6 O 1.21578 * 120.00007 * 0.02562 * 5 4 2 7 7 N 1.34782 * 119.99815 * 180.02562 * 5 4 2 8 8 C 1.46497 * 120.00016 * 180.02562 * 7 5 4 9 9 C 1.50694 * 109.47115 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00563 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99902 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99913 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 C 1.53002 * 109.46856 * 240.00145 * 2 1 3 18 18 H 1.09003 * 109.51023 * 65.00411 * 17 2 1 19 19 C 1.53095 * 109.50821 * 185.09143 * 17 2 1 20 20 N 1.47010 * 109.26162 * 176.78378 * 19 17 2 21 21 C 1.46901 * 111.00294 * 177.60634 * 20 19 17 22 22 C 1.50698 * 109.47320 * 189.99803 * 21 20 19 23 23 C 1.38233 * 120.00113 * 269.72844 * 22 21 20 24 24 C 1.38237 * 119.99828 * 179.76530 * 23 22 21 25 25 C 1.38237 * 120.00057 * 0.50659 * 24 23 22 26 26 C 1.38233 * 119.99952 * 359.74671 * 25 24 23 27 27 C 1.38236 * 119.99911 * 0.02562 * 26 25 24 28 28 C 1.47013 * 110.75235 * 301.37875 * 20 19 17 29 29 C 1.53107 * 109.25204 * 58.61729 * 28 20 19 30 30 O 1.43014 * 109.29411 * 303.17202 * 29 28 20 31 31 H 1.09001 * 109.46615 * 300.00086 * 1 2 3 32 32 H 1.09004 * 109.46654 * 59.99696 * 1 2 3 33 33 H 1.08996 * 109.47829 * 179.97438 * 1 2 3 34 34 H 0.96997 * 120.00426 * 94.99500 * 4 2 1 35 35 H 0.97001 * 119.99765 * 0.02562 * 7 5 4 36 36 H 1.09007 * 109.47078 * 59.99547 * 8 7 5 37 37 H 1.09003 * 109.46733 * 300.00270 * 8 7 5 38 38 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 39 39 H 1.09005 * 109.50478 * 296.72160 * 19 17 2 40 40 H 1.09004 * 109.51142 * 56.80334 * 19 17 2 41 41 H 1.09007 * 109.47222 * 310.00249 * 21 20 19 42 42 H 1.09009 * 109.47274 * 69.99763 * 21 20 19 43 43 H 1.08004 * 120.00130 * 359.97438 * 23 22 21 44 44 H 1.07999 * 120.00005 * 180.22952 * 24 23 22 45 45 H 1.07994 * 120.00008 * 179.72406 * 25 24 23 46 46 H 1.08000 * 120.00348 * 179.97438 * 26 25 24 47 47 H 1.08005 * 120.00231 * 179.97438 * 27 26 25 48 48 H 1.08999 * 109.50625 * 178.54708 * 28 20 19 49 49 H 1.08997 * 109.50930 * 298.63964 * 28 20 19 50 50 H 1.08999 * 109.50874 * 63.08464 * 29 28 20 51 51 H 1.09005 * 109.50389 * 183.16961 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8576 1.1612 2.4118 7 7 2.5968 -0.6537 3.4574 8 6 2.7363 0.0769 4.7195 9 6 3.2528 -0.8552 5.7850 10 1 3.4564 -1.8886 5.5462 11 6 3.4645 -0.3889 7.0653 12 7 3.2161 0.8694 7.3563 13 14 4.1041 -1.5445 8.3862 14 1 2.9585 -2.1891 9.0771 15 1 4.9559 -2.5880 7.7610 16 1 4.9065 -0.7750 9.3708 17 6 2.0399 -0.7212 -1.2493 18 1 1.7519 -0.1587 -2.1374 19 6 3.5655 -0.8336 -1.1878 20 7 4.0430 -1.5945 -2.3516 21 6 5.5097 -1.6770 -2.3609 22 6 5.9726 -2.2425 -3.6788 23 6 6.1310 -3.6076 -3.8279 24 6 6.5510 -4.1266 -5.0383 25 6 6.8227 -3.2797 -6.0965 26 6 6.6694 -1.9141 -5.9459 27 6 6.2449 -1.3955 -4.7369 28 6 3.4398 -2.9348 -2.3809 29 6 1.9153 -2.8013 -2.4304 30 8 1.4716 -2.0323 -1.3093 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2489 -1.6319 1.1526 35 1 2.8281 -1.5947 3.4136 36 1 1.7654 0.4703 5.0209 37 1 3.4369 0.9013 4.5865 38 1 3.3647 1.1972 8.2571 39 1 4.0047 0.1639 -1.2000 40 1 3.8561 -1.3480 -0.2718 41 1 5.9306 -0.6808 -2.2250 42 1 5.8423 -2.3256 -1.5504 43 1 5.9233 -4.2690 -2.9997 44 1 6.6711 -5.1934 -5.1559 45 1 7.1551 -3.6848 -7.0408 46 1 6.8821 -1.2524 -6.7725 47 1 6.1255 -0.3286 -4.6190 48 1 3.7871 -3.4710 -3.2640 49 1 3.7288 -3.4837 -1.4846 50 1 1.6236 -2.2999 -3.3532 51 1 1.4619 -3.7920 -2.3955 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787358752.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:38 Heat of formation + Delta-G solvation = -69.354895 kcal Electronic energy + Delta-G solvation = -30510.487433 eV Core-core repulsion = 26408.633199 eV Total energy + Delta-G solvation = -4101.854234 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.42172 -40.62278 -39.83955 -37.19634 -36.46422 -35.87430 -34.39046 -32.69963 -32.42822 -31.76757 -30.75359 -28.94474 -28.78826 -25.76329 -25.12645 -24.74323 -23.41177 -22.70963 -22.02216 -21.66121 -21.08545 -19.89364 -18.16799 -17.86575 -17.71091 -17.28984 -16.88955 -16.53690 -16.35719 -16.32455 -16.09882 -15.83437 -15.57118 -15.44298 -15.12098 -14.98194 -14.80935 -14.28229 -14.24597 -14.04789 -13.96805 -13.79843 -13.44219 -13.32750 -13.04085 -12.89848 -12.83375 -12.71085 -12.57337 -12.37670 -12.22332 -12.05906 -11.86979 -11.76126 -11.55649 -11.46888 -11.17605 -10.79803 -10.62820 -10.23828 -9.78995 -9.72972 -9.58973 -9.36158 -8.28047 -6.44233 0.42492 0.53157 1.42729 1.45622 1.56438 1.89919 2.27740 2.39491 2.60849 2.71777 3.06654 3.08790 3.52494 3.63619 3.81874 3.83365 3.94269 4.01431 4.14903 4.18098 4.22422 4.30839 4.35079 4.36267 4.42403 4.52476 4.61409 4.62547 4.70418 4.76929 4.79131 4.81048 4.90124 4.96491 4.99575 5.12264 5.12652 5.18682 5.28626 5.35801 5.50028 5.57919 5.60987 5.65469 5.69421 5.70200 5.84749 5.86411 5.92964 6.14283 6.18100 6.28122 6.67476 7.24896 7.32581 7.75620 8.84196 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012164 B = 0.002172 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.239384 B =12889.814551 C =14235.495594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.170 3.830 3 H 0.084 0.916 4 N -0.724 5.724 5 C 0.694 3.306 6 O -0.646 6.646 7 N -0.726 5.726 8 C 0.287 3.713 9 C -0.555 4.555 10 H 0.082 0.918 11 C 0.003 3.997 12 N -0.929 5.929 13 Si 0.986 3.014 14 H -0.271 1.271 15 H -0.257 1.257 16 H -0.283 1.283 17 C 0.104 3.896 18 H 0.094 0.906 19 C 0.027 3.973 20 N -0.530 5.530 21 C 0.093 3.907 22 C -0.087 4.087 23 C -0.123 4.123 24 C -0.127 4.127 25 C -0.127 4.127 26 C -0.129 4.129 27 C -0.112 4.112 28 C 0.016 3.984 29 C 0.064 3.936 30 O -0.386 6.386 31 H 0.032 0.968 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.406 0.594 35 H 0.402 0.598 36 H -0.016 1.016 37 H -0.014 1.014 38 H 0.269 0.731 39 H 0.085 0.915 40 H 0.038 0.962 41 H 0.084 0.916 42 H 0.042 0.958 43 H 0.124 0.876 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.125 0.875 48 H 0.096 0.904 49 H 0.039 0.961 50 H 0.063 0.937 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.479 -12.550 -30.304 33.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.065 3.935 3 H 0.102 0.898 4 N -0.381 5.381 5 C 0.394 3.606 6 O -0.528 6.528 7 N -0.379 5.379 8 C 0.164 3.836 9 C -0.592 4.592 10 H 0.100 0.900 11 C -0.196 4.196 12 N -0.568 5.568 13 Si 0.809 3.191 14 H -0.196 1.196 15 H -0.180 1.180 16 H -0.209 1.209 17 C 0.045 3.955 18 H 0.112 0.888 19 C -0.101 4.101 20 N -0.254 5.254 21 C -0.034 4.034 22 C -0.087 4.087 23 C -0.142 4.142 24 C -0.145 4.145 25 C -0.145 4.145 26 C -0.146 4.146 27 C -0.130 4.130 28 C -0.112 4.112 29 C -0.012 4.012 30 O -0.305 6.305 31 H 0.051 0.949 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.242 0.758 35 H 0.237 0.763 36 H 0.002 0.998 37 H 0.004 0.996 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.056 0.944 41 H 0.102 0.898 42 H 0.060 0.940 43 H 0.142 0.858 44 H 0.156 0.844 45 H 0.157 0.843 46 H 0.155 0.845 47 H 0.143 0.857 48 H 0.114 0.886 49 H 0.057 0.943 50 H 0.081 0.919 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.947 -11.161 -30.382 32.607 hybrid contribution 0.881 -1.010 1.572 2.066 sum 4.828 -12.172 -28.810 31.646 Atomic orbital electron populations 1.22012 0.94406 1.02702 1.01816 1.20880 0.95022 0.95931 0.81714 0.89768 1.44988 1.71515 1.13823 1.07769 1.16275 0.78334 0.84763 0.81258 1.90830 1.59668 1.16832 1.85509 1.45322 1.69264 1.14084 1.09237 1.18382 0.93973 0.91598 0.79668 1.21590 1.45587 0.97284 0.94784 0.90041 1.26065 0.95221 0.97050 1.01303 1.70144 1.48584 1.16490 1.21573 0.85149 0.78402 0.78095 0.77496 1.19620 1.18044 1.20858 1.22277 0.91069 0.85050 0.97071 0.88838 1.22720 0.95999 0.99645 0.91779 1.62258 1.06521 1.16150 1.40480 1.21051 0.87204 1.01252 0.93869 1.19746 0.99730 0.93867 0.95380 1.21225 1.00109 0.94523 0.98337 1.21399 0.99266 1.00840 0.93008 1.21471 0.99715 0.93657 0.99684 1.21427 0.99474 0.96036 0.97703 1.21199 0.98735 1.00107 0.92997 1.22907 0.96214 0.90005 1.02089 1.22795 0.92382 0.96981 0.89052 1.88003 1.68262 1.25985 1.48246 0.94859 0.89764 0.91354 0.75797 0.76325 0.99755 0.99599 0.92248 0.89645 0.94363 0.89758 0.93969 0.85777 0.84394 0.84276 0.84522 0.85712 0.88607 0.94311 0.91855 0.86599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 9.29 71.98 0.67 -3.18 16 2 C 0.17 4.45 2.48 44.99 0.11 4.56 16 3 H 0.08 2.49 7.58 -2.39 -0.02 2.48 16 4 N -0.72 -22.09 4.27 -457.82 -1.95 -24.04 16 5 C 0.69 29.57 8.53 179.05 1.53 31.10 16 6 O -0.65 -33.60 16.01 -3.96 -0.06 -33.67 16 7 N -0.73 -32.29 5.55 -482.30 -2.68 -34.96 16 8 C 0.29 16.24 5.43 85.63 0.46 16.71 16 9 C -0.55 -30.77 9.28 25.60 0.24 -30.53 16 10 H 0.08 4.10 7.60 -2.91 -0.02 4.08 16 11 C 0.00 0.18 5.46 84.66 0.46 0.64 16 12 N -0.93 -56.70 13.29 21.45 0.28 -56.42 16 13 Si 0.99 42.85 29.54 68.60 2.03 44.88 16 14 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 15 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 16 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 17 C 0.10 2.05 2.60 30.63 0.08 2.13 16 18 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 19 C 0.03 0.53 4.76 86.31 0.41 0.94 16 20 N -0.53 -9.11 4.72 -899.75 -4.24 -13.35 16 21 C 0.09 1.56 5.12 85.56 0.44 2.00 16 22 C -0.09 -1.37 4.89 -19.87 -0.10 -1.47 16 23 C -0.12 -1.74 7.95 22.27 0.18 -1.57 16 24 C -0.13 -1.56 10.05 22.27 0.22 -1.33 16 25 C -0.13 -1.50 10.05 22.27 0.22 -1.27 16 26 C -0.13 -1.66 10.05 22.27 0.22 -1.44 16 27 C -0.11 -1.70 9.70 22.27 0.22 -1.48 16 28 C 0.02 0.24 5.29 86.32 0.46 0.69 16 29 C 0.06 0.92 7.01 72.02 0.50 1.43 16 30 O -0.39 -7.45 9.33 -148.98 -1.39 -8.84 16 31 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.07 1.68 7.56 -2.39 -0.02 1.66 16 34 H 0.41 10.56 7.87 -92.71 -0.73 9.83 16 35 H 0.40 15.02 8.34 -92.71 -0.77 14.25 16 36 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 37 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 38 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 39 H 0.09 1.74 8.09 -2.38 -0.02 1.73 16 40 H 0.04 0.86 7.03 -2.39 -0.02 0.84 16 41 H 0.08 1.41 7.98 -2.38 -0.02 1.39 16 42 H 0.04 0.73 8.06 -2.38 -0.02 0.71 16 43 H 0.12 1.53 8.02 -2.91 -0.02 1.50 16 44 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16 45 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16 46 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 47 H 0.12 1.73 8.06 -2.91 -0.02 1.71 16 48 H 0.10 1.31 6.03 -2.39 -0.01 1.29 16 49 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.12 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -73.64 411.77 -2.26 -75.90 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: -0.57 Total: 32.56 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: 6.33 Total: 17.94 kcal Atomic # 7 Polarization: -120.18 SS G_CDS: -8.59 Total: -128.78 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -1.45 Total: -42.51 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -73.64 -2.26 -75.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358752.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.545 kcal (2) G-P(sol) polarization free energy of solvation -73.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds