Wall clock time and date at job start Wed Apr 1 2020 04:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46912 * 2 1 4 4 N 1.46496 * 109.46864 * 240.00664 * 2 1 3 5 5 C 1.34773 * 120.00617 * 84.99908 * 4 2 1 6 6 O 1.21590 * 119.99909 * 359.97438 * 5 4 2 7 7 N 1.34781 * 120.00648 * 180.02562 * 5 4 2 8 8 C 1.46500 * 120.00064 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.47002 * 179.97438 * 8 7 5 10 10 H 1.08005 * 119.99886 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00326 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99865 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00194 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47290 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46869 * 120.00038 * 13 11 9 16 16 H 1.48497 * 109.47155 * 239.99685 * 13 11 9 17 17 C 1.52993 * 109.47501 * 120.00377 * 2 1 3 18 18 H 1.08997 * 109.54320 * 175.11212 * 17 2 1 19 19 C 1.53100 * 109.50301 * 295.21684 * 17 2 1 20 20 N 1.47018 * 109.25333 * 176.78486 * 19 17 2 21 21 C 1.46908 * 110.99661 * 177.61066 * 20 19 17 22 22 C 1.50708 * 109.46782 * 189.99956 * 21 20 19 23 23 C 1.38232 * 119.99715 * 269.72443 * 22 21 20 24 24 C 1.38233 * 119.99831 * 179.77033 * 23 22 21 25 25 C 1.38231 * 120.00015 * 0.50162 * 24 23 22 26 26 C 1.38242 * 119.99953 * 359.74985 * 25 24 23 27 27 C 1.38231 * 119.99900 * 90.00168 * 22 21 20 28 28 C 1.47024 * 110.79014 * 301.40179 * 20 19 17 29 29 C 1.53103 * 109.24985 * 58.55528 * 28 20 19 30 30 O 1.43011 * 109.50936 * 54.99935 * 17 2 1 31 31 H 1.09004 * 109.47302 * 59.99732 * 1 2 3 32 32 H 1.09000 * 109.46912 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46773 * 299.99195 * 1 2 3 34 34 H 0.97009 * 120.00258 * 264.99329 * 4 2 1 35 35 H 0.96995 * 119.99603 * 359.97438 * 7 5 4 36 36 H 1.08999 * 109.46995 * 299.99611 * 8 7 5 37 37 H 1.09005 * 109.47173 * 59.99703 * 8 7 5 38 38 H 0.96998 * 120.00055 * 179.97438 * 12 11 9 39 39 H 1.08994 * 109.51226 * 296.71449 * 19 17 2 40 40 H 1.09003 * 109.50771 * 56.81080 * 19 17 2 41 41 H 1.09001 * 109.46845 * 309.99219 * 21 20 19 42 42 H 1.08995 * 109.47370 * 70.00196 * 21 20 19 43 43 H 1.08011 * 120.00193 * 359.97438 * 23 22 21 44 44 H 1.08002 * 120.00302 * 180.22955 * 24 23 22 45 45 H 1.07995 * 120.00560 * 179.72565 * 25 24 23 46 46 H 1.07996 * 120.00321 * 179.97438 * 26 25 24 47 47 H 1.07998 * 120.00499 * 359.97438 * 27 22 21 48 48 H 1.08998 * 109.47369 * 298.64253 * 28 20 19 49 49 H 1.08998 * 109.54483 * 178.50460 * 28 20 19 50 50 H 1.09002 * 109.50635 * 183.25881 * 29 28 20 51 51 H 1.09003 * 109.50698 * 63.17493 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0181 -2.3572 6 8 1.8574 1.1615 -2.4118 7 7 2.5957 -0.6535 -3.4579 8 6 2.7351 0.0773 -4.7199 9 6 3.2516 -0.8545 -5.7856 10 1 3.4561 -1.8878 -5.5466 11 6 3.4642 -0.3880 -7.0655 12 7 3.2157 0.8703 -7.3564 13 14 4.1052 -1.5430 -8.3863 14 1 4.3026 -2.8961 -7.8073 15 1 3.1223 -1.6188 -9.4969 16 1 5.3995 -1.0322 -8.9048 17 6 2.0401 -0.7213 1.2491 18 1 3.1266 -0.7983 1.2075 19 6 1.6309 0.0659 2.4968 20 7 2.0562 -0.6707 3.6959 21 6 1.7321 0.0791 4.9170 22 6 2.3935 -0.5785 6.1007 23 6 1.7250 -1.5593 6.8093 24 6 2.3334 -2.1658 7.8921 25 6 3.6064 -1.7844 8.2728 26 6 4.2729 -0.8000 7.5674 27 6 3.6664 -0.1970 6.4814 28 6 1.4538 -2.0115 3.7258 29 6 1.8640 -2.7774 2.4651 30 8 1.4704 -2.0316 1.3101 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 2.2491 -1.6317 -1.1528 35 1 2.8264 -1.5946 -3.4144 36 1 1.7643 0.4713 -5.0207 37 1 3.4363 0.9013 -4.5871 38 1 3.3656 1.1987 -8.2567 39 1 2.1092 1.0452 2.4826 40 1 0.5480 0.1899 2.5101 41 1 2.0937 1.1030 4.8212 42 1 0.6520 0.0873 5.0625 43 1 0.7284 -1.8539 6.5148 44 1 1.8126 -2.9347 8.4435 45 1 4.0801 -2.2552 9.1215 46 1 5.2673 -0.5016 7.8650 47 1 4.1872 0.5721 5.9303 48 1 0.3680 -1.9214 3.7598 49 1 1.8029 -2.5486 4.6076 50 1 1.3732 -3.7506 2.4547 51 1 2.9453 -2.9150 2.4585 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787358753.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:41 Heat of formation + Delta-G solvation = -70.151651 kcal Electronic energy + Delta-G solvation = -30048.263482 eV Core-core repulsion = 25946.374698 eV Total energy + Delta-G solvation = -4101.888784 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.36730 -40.65960 -39.85505 -37.19575 -36.44234 -35.86182 -34.39801 -32.98632 -32.44195 -31.75236 -30.45332 -28.97945 -28.51476 -26.02211 -25.29620 -24.65997 -23.44110 -22.85718 -21.82397 -21.58127 -21.07898 -19.80080 -18.16281 -17.82006 -17.63747 -17.26494 -17.01194 -16.62930 -16.34219 -16.33826 -16.19067 -15.95637 -15.59900 -15.26648 -15.13046 -14.94597 -14.77505 -14.31639 -14.23015 -14.03366 -13.92202 -13.70450 -13.59757 -13.39580 -13.07058 -12.85437 -12.76685 -12.74303 -12.56045 -12.30983 -12.20486 -12.00209 -11.86098 -11.75618 -11.57155 -11.42845 -11.18321 -10.79810 -10.63495 -10.24123 -9.77780 -9.71285 -9.57228 -9.33588 -8.27002 -6.43111 0.43380 0.54027 1.44262 1.45858 1.59084 1.86844 2.27212 2.40352 2.65571 2.71267 3.07937 3.11665 3.52586 3.67913 3.82585 3.89478 3.96644 4.00290 4.06857 4.19043 4.21708 4.29654 4.32709 4.37096 4.45671 4.47177 4.63102 4.63431 4.71718 4.74790 4.80185 4.81530 4.87961 4.96011 5.00368 5.13454 5.14007 5.19494 5.29588 5.34825 5.51529 5.58641 5.60225 5.66487 5.70735 5.71010 5.87434 5.89309 5.94977 6.15299 6.17774 6.29862 6.68940 7.26192 7.34002 7.75847 8.85566 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023884 B = 0.001676 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.065342 B =16704.592909 C =16922.157733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.171 3.829 3 H 0.084 0.916 4 N -0.726 5.726 5 C 0.693 3.307 6 O -0.647 6.647 7 N -0.725 5.725 8 C 0.286 3.714 9 C -0.554 4.554 10 H 0.083 0.917 11 C 0.004 3.996 12 N -0.930 5.930 13 Si 0.987 3.013 14 H -0.254 1.254 15 H -0.279 1.279 16 H -0.278 1.278 17 C 0.102 3.898 18 H 0.069 0.931 19 C 0.030 3.970 20 N -0.537 5.537 21 C 0.095 3.905 22 C -0.087 4.087 23 C -0.122 4.122 24 C -0.128 4.128 25 C -0.129 4.129 26 C -0.131 4.131 27 C -0.113 4.113 28 C 0.019 3.981 29 C 0.062 3.938 30 O -0.386 6.386 31 H 0.032 0.968 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.409 0.591 35 H 0.403 0.597 36 H -0.015 1.015 37 H -0.014 1.014 38 H 0.269 0.731 39 H 0.095 0.905 40 H 0.055 0.945 41 H 0.089 0.911 42 H 0.050 0.950 43 H 0.128 0.872 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.134 0.866 47 H 0.124 0.876 48 H 0.044 0.956 49 H 0.095 0.905 50 H 0.116 0.884 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.225 -9.395 34.616 35.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.065 3.935 3 H 0.102 0.898 4 N -0.383 5.383 5 C 0.393 3.607 6 O -0.529 6.529 7 N -0.378 5.378 8 C 0.162 3.838 9 C -0.592 4.592 10 H 0.101 0.899 11 C -0.196 4.196 12 N -0.569 5.569 13 Si 0.810 3.190 14 H -0.178 1.178 15 H -0.204 1.204 16 H -0.204 1.204 17 C 0.043 3.957 18 H 0.087 0.913 19 C -0.099 4.099 20 N -0.262 5.262 21 C -0.032 4.032 22 C -0.088 4.088 23 C -0.140 4.140 24 C -0.146 4.146 25 C -0.147 4.147 26 C -0.149 4.149 27 C -0.131 4.131 28 C -0.109 4.109 29 C -0.015 4.015 30 O -0.305 6.305 31 H 0.051 0.949 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.245 0.755 35 H 0.238 0.762 36 H 0.003 0.997 37 H 0.004 0.996 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.073 0.927 41 H 0.108 0.892 42 H 0.068 0.932 43 H 0.146 0.854 44 H 0.156 0.844 45 H 0.155 0.845 46 H 0.152 0.848 47 H 0.142 0.858 48 H 0.063 0.937 49 H 0.113 0.887 50 H 0.134 0.866 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.103 -8.319 34.243 35.302 hybrid contribution -0.245 -0.504 -0.697 0.894 sum -2.348 -8.823 33.546 34.766 Atomic orbital electron populations 1.22068 0.94686 1.02565 1.01636 1.20781 0.94917 0.95940 0.81823 0.89845 1.44942 1.71567 1.14039 1.07734 1.16283 0.78348 0.84765 0.81294 1.90827 1.59727 1.16825 1.85558 1.45313 1.69197 1.14141 1.09146 1.18407 0.94030 0.91655 0.79687 1.21640 1.45443 0.97364 0.94778 0.89935 1.26062 0.95192 0.97048 1.01295 1.70152 1.48638 1.16523 1.21584 0.85088 0.77639 0.78716 0.77595 1.17764 1.20438 1.20393 1.22184 0.97438 0.83430 0.92674 0.91264 1.22730 1.00034 0.98017 0.89093 1.62169 1.59389 1.03108 1.01488 1.21067 0.98097 0.97314 0.86700 1.19787 0.95124 0.97541 0.96300 1.21242 1.00342 0.96403 0.96050 1.21403 0.95689 1.00319 0.97213 1.21462 0.95351 0.97517 1.00366 1.21424 1.00691 0.96969 0.95810 1.21210 0.94660 1.00281 0.96970 1.22858 0.97600 0.90446 0.99951 1.22802 1.00331 0.94989 0.83376 1.87997 1.71603 1.26438 1.44477 0.94891 0.91484 0.89915 0.75497 0.76171 0.99674 0.99565 0.92261 0.88662 0.92667 0.89233 0.93161 0.85420 0.84426 0.84509 0.84824 0.85758 0.93749 0.88730 0.86634 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 9.04 71.98 0.65 -3.21 16 2 C 0.17 4.54 2.45 44.99 0.11 4.65 16 3 H 0.08 2.50 7.58 -2.39 -0.02 2.48 16 4 N -0.73 -22.70 5.06 -457.82 -2.32 -25.02 16 5 C 0.69 30.00 8.53 179.05 1.53 31.53 16 6 O -0.65 -33.96 16.01 -4.00 -0.06 -34.03 16 7 N -0.72 -32.54 5.55 -482.29 -2.68 -35.22 16 8 C 0.29 16.25 5.43 85.63 0.46 16.71 16 9 C -0.55 -30.90 9.28 25.60 0.24 -30.66 16 10 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 11 C 0.00 0.20 5.46 84.65 0.46 0.66 16 12 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 13 Si 0.99 43.00 29.54 68.60 2.03 45.02 16 14 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 15 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 16 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 17 C 0.10 2.05 2.64 30.63 0.08 2.13 16 18 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 19 C 0.03 0.49 4.75 86.31 0.41 0.90 16 20 N -0.54 -8.07 4.72 -899.70 -4.24 -12.32 16 21 C 0.10 1.23 5.12 85.56 0.44 1.66 16 22 C -0.09 -1.18 4.89 -19.86 -0.10 -1.28 16 23 C -0.12 -1.45 7.95 22.27 0.18 -1.28 16 24 C -0.13 -1.40 10.05 22.27 0.22 -1.17 16 25 C -0.13 -1.43 10.05 22.27 0.22 -1.21 16 26 C -0.13 -1.62 10.05 22.27 0.22 -1.40 16 27 C -0.11 -1.57 9.70 22.27 0.22 -1.35 16 28 C 0.02 0.26 5.29 86.31 0.46 0.72 16 29 C 0.06 0.91 7.01 72.02 0.50 1.41 16 30 O -0.39 -7.60 9.33 -148.98 -1.39 -8.99 16 31 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 1.66 7.56 -2.39 -0.02 1.65 16 33 H 0.08 1.67 6.49 -2.39 -0.02 1.65 16 34 H 0.41 10.71 8.40 -92.70 -0.78 9.93 16 35 H 0.40 15.17 8.33 -92.71 -0.77 14.40 16 36 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 37 H -0.01 -0.87 8.14 -2.38 -0.02 -0.89 16 38 H 0.27 15.26 8.31 -92.71 -0.77 14.48 16 39 H 0.10 1.47 8.09 -2.39 -0.02 1.45 16 40 H 0.06 0.88 6.42 -2.39 -0.02 0.87 16 41 H 0.09 1.08 7.98 -2.39 -0.02 1.06 16 42 H 0.05 0.60 8.06 -2.39 -0.02 0.58 16 43 H 0.13 1.19 8.03 -2.90 -0.02 1.17 16 44 H 0.14 0.94 8.06 -2.91 -0.02 0.91 16 45 H 0.14 0.96 8.06 -2.91 -0.02 0.94 16 46 H 0.13 1.20 8.06 -2.91 -0.02 1.18 16 47 H 0.12 1.59 8.06 -2.91 -0.02 1.57 16 48 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.09 1.17 6.04 -2.39 -0.01 1.16 16 50 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -74.64 410.58 -2.69 -77.32 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: -0.62 Total: 31.02 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: 6.31 Total: 18.81 kcal Atomic # 7 Polarization: -120.22 SS G_CDS: -8.95 Total: -129.17 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -1.45 Total: -43.01 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -74.64 -2.69 -77.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358753.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.173 kcal (2) G-P(sol) polarization free energy of solvation -74.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds