Wall clock time and date at job start Wed Apr 1 2020 04:46:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.09000 * 109.46912 * 2 1
4 4 N 1.46496 * 109.46864 * 240.00664 * 2 1 3
5 5 C 1.34773 * 120.00617 * 84.99908 * 4 2 1
6 6 O 1.21590 * 119.99909 * 359.97438 * 5 4 2
7 7 N 1.34781 * 120.00648 * 180.02562 * 5 4 2
8 8 C 1.46500 * 120.00064 * 179.97438 * 7 5 4
9 9 C 1.50697 * 109.47002 * 179.97438 * 8 7 5
10 10 H 1.08005 * 119.99886 * 359.97438 * 9 8 7
11 11 C 1.37876 * 120.00326 * 180.02562 * 9 8 7
12 12 N 1.31519 * 119.99865 * 359.97438 * 11 9 8
13 13 Si 1.86800 * 120.00194 * 179.97438 * 11 9 8
14 14 H 1.48499 * 109.47290 * 0.02562 * 13 11 9
15 15 H 1.48508 * 109.46869 * 120.00038 * 13 11 9
16 16 H 1.48497 * 109.47155 * 239.99685 * 13 11 9
17 17 C 1.52993 * 109.47501 * 120.00377 * 2 1 3
18 18 H 1.08997 * 109.54320 * 175.11212 * 17 2 1
19 19 C 1.53100 * 109.50301 * 295.21684 * 17 2 1
20 20 N 1.47018 * 109.25333 * 176.78486 * 19 17 2
21 21 C 1.46908 * 110.99661 * 177.61066 * 20 19 17
22 22 C 1.50708 * 109.46782 * 189.99956 * 21 20 19
23 23 C 1.38232 * 119.99715 * 269.72443 * 22 21 20
24 24 C 1.38233 * 119.99831 * 179.77033 * 23 22 21
25 25 C 1.38231 * 120.00015 * 0.50162 * 24 23 22
26 26 C 1.38242 * 119.99953 * 359.74985 * 25 24 23
27 27 C 1.38231 * 119.99900 * 90.00168 * 22 21 20
28 28 C 1.47024 * 110.79014 * 301.40179 * 20 19 17
29 29 C 1.53103 * 109.24985 * 58.55528 * 28 20 19
30 30 O 1.43011 * 109.50936 * 54.99935 * 17 2 1
31 31 H 1.09004 * 109.47302 * 59.99732 * 1 2 3
32 32 H 1.09000 * 109.46912 * 179.97438 * 1 2 3
33 33 H 1.08996 * 109.46773 * 299.99195 * 1 2 3
34 34 H 0.97009 * 120.00258 * 264.99329 * 4 2 1
35 35 H 0.96995 * 119.99603 * 359.97438 * 7 5 4
36 36 H 1.08999 * 109.46995 * 299.99611 * 8 7 5
37 37 H 1.09005 * 109.47173 * 59.99703 * 8 7 5
38 38 H 0.96998 * 120.00055 * 179.97438 * 12 11 9
39 39 H 1.08994 * 109.51226 * 296.71449 * 19 17 2
40 40 H 1.09003 * 109.50771 * 56.81080 * 19 17 2
41 41 H 1.09001 * 109.46845 * 309.99219 * 21 20 19
42 42 H 1.08995 * 109.47370 * 70.00196 * 21 20 19
43 43 H 1.08011 * 120.00193 * 359.97438 * 23 22 21
44 44 H 1.08002 * 120.00302 * 180.22955 * 24 23 22
45 45 H 1.07995 * 120.00560 * 179.72565 * 25 24 23
46 46 H 1.07996 * 120.00321 * 179.97438 * 26 25 24
47 47 H 1.07998 * 120.00499 * 359.97438 * 27 22 21
48 48 H 1.08998 * 109.47369 * 298.64253 * 28 20 19
49 49 H 1.08998 * 109.54483 * 178.50460 * 28 20 19
50 50 H 1.09002 * 109.50635 * 183.25881 * 29 28 20
51 51 H 1.09003 * 109.50698 * 63.17493 * 29 28 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0183 -0.6905 -1.1962
5 6 2.1470 -0.0181 -2.3572
6 8 1.8574 1.1615 -2.4118
7 7 2.5957 -0.6535 -3.4579
8 6 2.7351 0.0773 -4.7199
9 6 3.2516 -0.8545 -5.7856
10 1 3.4561 -1.8878 -5.5466
11 6 3.4642 -0.3880 -7.0655
12 7 3.2157 0.8703 -7.3564
13 14 4.1052 -1.5430 -8.3863
14 1 4.3026 -2.8961 -7.8073
15 1 3.1223 -1.6188 -9.4969
16 1 5.3995 -1.0322 -8.9048
17 6 2.0401 -0.7213 1.2491
18 1 3.1266 -0.7983 1.2075
19 6 1.6309 0.0659 2.4968
20 7 2.0562 -0.6707 3.6959
21 6 1.7321 0.0791 4.9170
22 6 2.3935 -0.5785 6.1007
23 6 1.7250 -1.5593 6.8093
24 6 2.3334 -2.1658 7.8921
25 6 3.6064 -1.7844 8.2728
26 6 4.2729 -0.8000 7.5674
27 6 3.6664 -0.1970 6.4814
28 6 1.4538 -2.0115 3.7258
29 6 1.8640 -2.7774 2.4651
30 8 1.4704 -2.0316 1.3101
31 1 -0.3634 0.5139 -0.8900
32 1 -0.3633 -1.0277 -0.0005
33 1 -0.3633 0.5137 0.8900
34 1 2.2491 -1.6317 -1.1528
35 1 2.8264 -1.5946 -3.4144
36 1 1.7643 0.4713 -5.0207
37 1 3.4363 0.9013 -4.5871
38 1 3.3656 1.1987 -8.2567
39 1 2.1092 1.0452 2.4826
40 1 0.5480 0.1899 2.5101
41 1 2.0937 1.1030 4.8212
42 1 0.6520 0.0873 5.0625
43 1 0.7284 -1.8539 6.5148
44 1 1.8126 -2.9347 8.4435
45 1 4.0801 -2.2552 9.1215
46 1 5.2673 -0.5016 7.8650
47 1 4.1872 0.5721 5.9303
48 1 0.3680 -1.9214 3.7598
49 1 1.8029 -2.5486 4.6076
50 1 1.3732 -3.7506 2.4547
51 1 2.9453 -2.9150 2.4585
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000787358753.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:46:41
Heat of formation + Delta-G solvation = -70.151651 kcal
Electronic energy + Delta-G solvation = -30048.263482 eV
Core-core repulsion = 25946.374698 eV
Total energy + Delta-G solvation = -4101.888784 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-41.36730 -40.65960 -39.85505 -37.19575 -36.44234 -35.86182 -34.39801 -32.98632
-32.44195 -31.75236 -30.45332 -28.97945 -28.51476 -26.02211 -25.29620 -24.65997
-23.44110 -22.85718 -21.82397 -21.58127 -21.07898 -19.80080 -18.16281 -17.82006
-17.63747 -17.26494 -17.01194 -16.62930 -16.34219 -16.33826 -16.19067 -15.95637
-15.59900 -15.26648 -15.13046 -14.94597 -14.77505 -14.31639 -14.23015 -14.03366
-13.92202 -13.70450 -13.59757 -13.39580 -13.07058 -12.85437 -12.76685 -12.74303
-12.56045 -12.30983 -12.20486 -12.00209 -11.86098 -11.75618 -11.57155 -11.42845
-11.18321 -10.79810 -10.63495 -10.24123 -9.77780 -9.71285 -9.57228 -9.33588
-8.27002 -6.43111 0.43380 0.54027 1.44262 1.45858 1.59084 1.86844
2.27212 2.40352 2.65571 2.71267 3.07937 3.11665 3.52586 3.67913
3.82585 3.89478 3.96644 4.00290 4.06857 4.19043 4.21708 4.29654
4.32709 4.37096 4.45671 4.47177 4.63102 4.63431 4.71718 4.74790
4.80185 4.81530 4.87961 4.96011 5.00368 5.13454 5.14007 5.19494
5.29588 5.34825 5.51529 5.58641 5.60225 5.66487 5.70735 5.71010
5.87434 5.89309 5.94977 6.15299 6.17774 6.29862 6.68940 7.26192
7.34002 7.75847 8.85566
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.023884 B = 0.001676 C = 0.001654
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1172.065342 B =16704.592909 C =16922.157733
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.171 3.829
3 H 0.084 0.916
4 N -0.726 5.726
5 C 0.693 3.307
6 O -0.647 6.647
7 N -0.725 5.725
8 C 0.286 3.714
9 C -0.554 4.554
10 H 0.083 0.917
11 C 0.004 3.996
12 N -0.930 5.930
13 Si 0.987 3.013
14 H -0.254 1.254
15 H -0.279 1.279
16 H -0.278 1.278
17 C 0.102 3.898
18 H 0.069 0.931
19 C 0.030 3.970
20 N -0.537 5.537
21 C 0.095 3.905
22 C -0.087 4.087
23 C -0.122 4.122
24 C -0.128 4.128
25 C -0.129 4.129
26 C -0.131 4.131
27 C -0.113 4.113
28 C 0.019 3.981
29 C 0.062 3.938
30 O -0.386 6.386
31 H 0.032 0.968
32 H 0.066 0.934
33 H 0.082 0.918
34 H 0.409 0.591
35 H 0.403 0.597
36 H -0.015 1.015
37 H -0.014 1.014
38 H 0.269 0.731
39 H 0.095 0.905
40 H 0.055 0.945
41 H 0.089 0.911
42 H 0.050 0.950
43 H 0.128 0.872
44 H 0.138 0.862
45 H 0.137 0.863
46 H 0.134 0.866
47 H 0.124 0.876
48 H 0.044 0.956
49 H 0.095 0.905
50 H 0.116 0.884
51 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.225 -9.395 34.616 35.937
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C 0.065 3.935
3 H 0.102 0.898
4 N -0.383 5.383
5 C 0.393 3.607
6 O -0.529 6.529
7 N -0.378 5.378
8 C 0.162 3.838
9 C -0.592 4.592
10 H 0.101 0.899
11 C -0.196 4.196
12 N -0.569 5.569
13 Si 0.810 3.190
14 H -0.178 1.178
15 H -0.204 1.204
16 H -0.204 1.204
17 C 0.043 3.957
18 H 0.087 0.913
19 C -0.099 4.099
20 N -0.262 5.262
21 C -0.032 4.032
22 C -0.088 4.088
23 C -0.140 4.140
24 C -0.146 4.146
25 C -0.147 4.147
26 C -0.149 4.149
27 C -0.131 4.131
28 C -0.109 4.109
29 C -0.015 4.015
30 O -0.305 6.305
31 H 0.051 0.949
32 H 0.085 0.915
33 H 0.101 0.899
34 H 0.245 0.755
35 H 0.238 0.762
36 H 0.003 0.997
37 H 0.004 0.996
38 H 0.077 0.923
39 H 0.113 0.887
40 H 0.073 0.927
41 H 0.108 0.892
42 H 0.068 0.932
43 H 0.146 0.854
44 H 0.156 0.844
45 H 0.155 0.845
46 H 0.152 0.848
47 H 0.142 0.858
48 H 0.063 0.937
49 H 0.113 0.887
50 H 0.134 0.866
51 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -2.103 -8.319 34.243 35.302
hybrid contribution -0.245 -0.504 -0.697 0.894
sum -2.348 -8.823 33.546 34.766
Atomic orbital electron populations
1.22068 0.94686 1.02565 1.01636 1.20781 0.94917 0.95940 0.81823
0.89845 1.44942 1.71567 1.14039 1.07734 1.16283 0.78348 0.84765
0.81294 1.90827 1.59727 1.16825 1.85558 1.45313 1.69197 1.14141
1.09146 1.18407 0.94030 0.91655 0.79687 1.21640 1.45443 0.97364
0.94778 0.89935 1.26062 0.95192 0.97048 1.01295 1.70152 1.48638
1.16523 1.21584 0.85088 0.77639 0.78716 0.77595 1.17764 1.20438
1.20393 1.22184 0.97438 0.83430 0.92674 0.91264 1.22730 1.00034
0.98017 0.89093 1.62169 1.59389 1.03108 1.01488 1.21067 0.98097
0.97314 0.86700 1.19787 0.95124 0.97541 0.96300 1.21242 1.00342
0.96403 0.96050 1.21403 0.95689 1.00319 0.97213 1.21462 0.95351
0.97517 1.00366 1.21424 1.00691 0.96969 0.95810 1.21210 0.94660
1.00281 0.96970 1.22858 0.97600 0.90446 0.99951 1.22802 1.00331
0.94989 0.83376 1.87997 1.71603 1.26438 1.44477 0.94891 0.91484
0.89915 0.75497 0.76171 0.99674 0.99565 0.92261 0.88662 0.92667
0.89233 0.93161 0.85420 0.84426 0.84509 0.84824 0.85758 0.93749
0.88730 0.86634 0.92552
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.86 9.04 71.98 0.65 -3.21 16
2 C 0.17 4.54 2.45 44.99 0.11 4.65 16
3 H 0.08 2.50 7.58 -2.39 -0.02 2.48 16
4 N -0.73 -22.70 5.06 -457.82 -2.32 -25.02 16
5 C 0.69 30.00 8.53 179.05 1.53 31.53 16
6 O -0.65 -33.96 16.01 -4.00 -0.06 -34.03 16
7 N -0.72 -32.54 5.55 -482.29 -2.68 -35.22 16
8 C 0.29 16.25 5.43 85.63 0.46 16.71 16
9 C -0.55 -30.90 9.28 25.60 0.24 -30.66 16
10 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16
11 C 0.00 0.20 5.46 84.65 0.46 0.66 16
12 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16
13 Si 0.99 43.00 29.54 68.60 2.03 45.02 16
14 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16
15 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16
16 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16
17 C 0.10 2.05 2.64 30.63 0.08 2.13 16
18 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16
19 C 0.03 0.49 4.75 86.31 0.41 0.90 16
20 N -0.54 -8.07 4.72 -899.70 -4.24 -12.32 16
21 C 0.10 1.23 5.12 85.56 0.44 1.66 16
22 C -0.09 -1.18 4.89 -19.86 -0.10 -1.28 16
23 C -0.12 -1.45 7.95 22.27 0.18 -1.28 16
24 C -0.13 -1.40 10.05 22.27 0.22 -1.17 16
25 C -0.13 -1.43 10.05 22.27 0.22 -1.21 16
26 C -0.13 -1.62 10.05 22.27 0.22 -1.40 16
27 C -0.11 -1.57 9.70 22.27 0.22 -1.35 16
28 C 0.02 0.26 5.29 86.31 0.46 0.72 16
29 C 0.06 0.91 7.01 72.02 0.50 1.41 16
30 O -0.39 -7.60 9.33 -148.98 -1.39 -8.99 16
31 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16
32 H 0.07 1.66 7.56 -2.39 -0.02 1.65 16
33 H 0.08 1.67 6.49 -2.39 -0.02 1.65 16
34 H 0.41 10.71 8.40 -92.70 -0.78 9.93 16
35 H 0.40 15.17 8.33 -92.71 -0.77 14.40 16
36 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16
37 H -0.01 -0.87 8.14 -2.38 -0.02 -0.89 16
38 H 0.27 15.26 8.31 -92.71 -0.77 14.48 16
39 H 0.10 1.47 8.09 -2.39 -0.02 1.45 16
40 H 0.06 0.88 6.42 -2.39 -0.02 0.87 16
41 H 0.09 1.08 7.98 -2.39 -0.02 1.06 16
42 H 0.05 0.60 8.06 -2.39 -0.02 0.58 16
43 H 0.13 1.19 8.03 -2.90 -0.02 1.17 16
44 H 0.14 0.94 8.06 -2.91 -0.02 0.91 16
45 H 0.14 0.96 8.06 -2.91 -0.02 0.94 16
46 H 0.13 1.20 8.06 -2.91 -0.02 1.18 16
47 H 0.12 1.59 8.06 -2.91 -0.02 1.57 16
48 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16
49 H 0.09 1.17 6.04 -2.39 -0.01 1.16 16
50 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16
51 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16
Total: -1.00 -74.64 410.58 -2.69 -77.32
By element:
Atomic # 1 Polarization: 31.64 SS G_CDS: -0.62 Total: 31.02 kcal
Atomic # 6 Polarization: 12.50 SS G_CDS: 6.31 Total: 18.81 kcal
Atomic # 7 Polarization: -120.22 SS G_CDS: -8.95 Total: -129.17 kcal
Atomic # 8 Polarization: -41.56 SS G_CDS: -1.45 Total: -43.01 kcal
Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal
Total: -74.64 -2.69 -77.32 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000787358753.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.173 kcal
(2) G-P(sol) polarization free energy of solvation -74.637 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.464 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.687 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.324 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.152 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds