Wall clock time and date at job start Wed Apr 1 2020 04:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47188 * 2 1 4 4 N 1.46502 * 109.47220 * 240.00132 * 2 1 3 5 5 C 1.34779 * 120.00052 * 84.99353 * 4 2 1 6 6 O 1.21583 * 119.99874 * 0.02562 * 5 4 2 7 7 N 1.34771 * 119.99779 * 179.72655 * 5 4 2 8 8 C 1.46505 * 119.99976 * 180.28020 * 7 5 4 9 9 C 1.53046 * 109.45794 * 275.03124 * 8 7 5 10 10 C 1.53193 * 109.31060 * 178.59870 * 9 8 7 11 11 N 1.46928 * 108.76274 * 54.65319 * 10 9 8 12 12 C 1.36943 * 120.63168 * 126.36371 * 11 10 9 13 13 H 1.08008 * 119.99315 * 331.85529 * 12 11 10 14 14 C 1.38809 * 120.00361 * 151.85656 * 12 11 10 15 15 N 1.31615 * 119.99942 * 343.06538 * 14 12 11 16 16 Si 1.86799 * 120.00042 * 163.06659 * 14 12 11 17 17 H 1.48495 * 109.47093 * 90.00159 * 16 14 12 18 18 H 1.48500 * 109.46881 * 210.00181 * 16 14 12 19 19 H 1.48500 * 109.47094 * 330.00172 * 16 14 12 20 20 C 1.46926 * 118.74122 * 306.37860 * 11 10 9 21 21 C 1.53036 * 109.46341 * 154.97109 * 8 7 5 22 22 C 1.53002 * 109.47195 * 119.99994 * 2 1 3 23 23 H 1.08999 * 109.46521 * 175.00074 * 22 2 1 24 24 O 1.42889 * 109.47085 * 55.00164 * 22 2 1 25 25 C 1.50698 * 109.47023 * 294.99811 * 22 2 1 26 26 C 1.38236 * 119.99852 * 84.72863 * 25 22 2 27 27 C 1.38235 * 120.00005 * 179.80516 * 26 25 22 28 28 C 1.38240 * 119.99694 * 0.40398 * 27 26 25 29 29 C 1.38232 * 120.00457 * 359.84951 * 28 27 26 30 30 C 1.38237 * 119.99603 * 359.96148 * 29 28 27 31 31 H 1.08994 * 109.46829 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46817 * 299.99850 * 1 2 3 33 33 H 1.08995 * 109.47028 * 59.99664 * 1 2 3 34 34 H 0.97001 * 119.99976 * 265.00005 * 4 2 1 35 35 H 0.97001 * 120.00190 * 0.27998 * 7 5 4 36 36 H 1.09004 * 109.45769 * 34.99691 * 8 7 5 37 37 H 1.09004 * 109.49099 * 298.56284 * 9 8 7 38 38 H 1.08996 * 109.50384 * 58.65973 * 9 8 7 39 39 H 1.08991 * 109.59798 * 294.86275 * 10 9 8 40 40 H 1.09003 * 109.69936 * 174.50097 * 10 9 8 41 41 H 0.97003 * 120.00241 * 179.97438 * 15 14 12 42 42 H 1.09001 * 109.58667 * 293.82314 * 20 11 10 43 43 H 1.09001 * 109.70602 * 173.46872 * 20 11 10 44 44 H 1.08993 * 109.49770 * 301.33929 * 21 8 7 45 45 H 1.09003 * 109.49585 * 61.40260 * 21 8 7 46 46 H 0.96702 * 114.00369 * 299.99465 * 24 22 2 47 47 H 1.07999 * 119.99807 * 359.97438 * 26 25 22 48 48 H 1.08000 * 120.00178 * 180.22777 * 27 26 25 49 49 H 1.08000 * 119.99663 * 179.83112 * 28 27 26 50 50 H 1.07997 * 120.00744 * 179.97438 * 29 28 27 51 51 H 1.08003 * 119.99768 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8582 1.1615 -2.4117 7 7 2.6015 -0.6522 -3.4562 8 6 2.7471 0.0801 -4.7167 9 6 1.4074 0.0931 -5.4565 10 6 1.5545 0.8894 -6.7569 11 7 2.6669 0.3250 -7.5334 12 6 2.4843 -0.0616 -8.8343 13 1 1.5108 -0.3887 -9.1689 14 6 3.5502 -0.0332 -9.7230 15 7 4.6302 0.6610 -9.4333 16 14 3.4519 -0.9802 -11.3302 17 1 2.8727 -0.1086 -12.3837 18 1 4.8145 -1.4089 -11.7362 19 1 2.5904 -2.1760 -11.1481 20 6 3.9789 0.1829 -6.8874 21 6 3.8045 -0.6051 -5.5853 22 6 2.0401 -0.7213 1.2493 23 1 3.1264 -0.7994 1.2055 24 8 1.4703 -2.0303 1.3094 25 6 1.6414 0.0571 2.4766 26 6 0.3908 -0.1272 3.0359 27 6 0.0266 0.5837 4.1640 28 6 0.9100 1.4852 4.7280 29 6 2.1586 1.6734 4.1656 30 6 2.5243 0.9595 3.0398 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 2.2491 -1.6318 -1.1526 35 1 2.8322 -1.5934 -3.4127 36 1 3.0566 1.1042 -4.5080 37 1 1.1095 -0.9296 -5.6875 38 1 0.6492 0.5602 -4.8280 39 1 1.7637 1.9335 -6.5247 40 1 0.6333 0.8212 -7.3357 41 1 5.3753 0.6806 -10.0542 42 1 4.3858 1.1695 -6.6658 43 1 4.6588 -0.3524 -7.5501 44 1 4.7526 -0.6351 -5.0485 45 1 3.4840 -1.6214 -5.8147 46 1 0.5042 -2.0373 1.3504 47 1 -0.3007 -0.8287 2.5930 48 1 -0.9491 0.4370 4.6032 49 1 0.6244 2.0427 5.6078 50 1 2.8486 2.3779 4.6059 51 1 3.5000 1.1062 2.6006 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812035028.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:11 Heat of formation + Delta-G solvation = -59.298245 kcal Electronic energy + Delta-G solvation = -30452.319352 eV Core-core repulsion = 26350.901207 eV Total energy + Delta-G solvation = -4101.418145 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.49709 -40.62282 -39.18281 -38.24211 -36.04233 -35.46779 -33.96724 -32.80646 -31.91292 -31.76135 -31.31178 -30.23441 -27.57784 -26.82429 -24.24490 -23.83901 -23.45509 -23.03226 -21.73856 -21.55795 -21.02581 -19.50740 -18.85667 -18.58965 -17.53568 -16.91035 -16.83455 -16.63855 -16.29780 -16.12535 -15.86034 -15.58245 -15.35008 -15.25090 -15.02302 -14.75283 -14.67419 -14.34197 -14.25241 -14.07200 -13.71972 -13.51184 -13.20746 -13.16299 -13.00126 -12.64391 -12.60722 -12.55009 -12.50552 -12.22168 -12.07859 -12.01523 -11.86559 -11.85763 -11.55532 -11.39048 -11.29130 -11.06747 -10.55372 -10.33041 -9.81746 -9.80945 -9.59456 -8.70220 -7.87326 -5.32948 0.36430 0.49470 1.48668 1.49794 1.59984 1.69278 2.19393 2.52544 2.82118 3.22458 3.30946 3.42721 3.63895 3.67012 3.79234 3.89151 3.91832 4.07396 4.11292 4.14603 4.26463 4.30395 4.35494 4.46996 4.51209 4.61789 4.65768 4.70556 4.81527 4.83167 4.85496 4.91156 5.04278 5.04623 5.07245 5.13663 5.16760 5.24593 5.30250 5.47291 5.52369 5.56654 5.61354 5.62466 5.62859 5.65123 5.70813 6.05969 6.09393 6.39509 6.63910 7.14883 7.15750 7.64172 7.84352 8.37634 9.19896 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.032559 B = 0.001768 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.781167 B =15829.263314 C =15902.646143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.138 3.862 3 H 0.071 0.929 4 N -0.725 5.725 5 C 0.701 3.299 6 O -0.635 6.635 7 N -0.727 5.727 8 C 0.182 3.818 9 C -0.122 4.122 10 C 0.145 3.855 11 N -0.608 5.608 12 C -0.264 4.264 13 H 0.067 0.933 14 C -0.050 4.050 15 N -0.936 5.936 16 Si 0.969 3.031 17 H -0.287 1.287 18 H -0.291 1.291 19 H -0.269 1.269 20 C 0.179 3.821 21 C -0.127 4.127 22 C 0.157 3.843 23 H 0.113 0.887 24 O -0.555 6.555 25 C -0.125 4.125 26 C -0.115 4.115 27 C -0.126 4.126 28 C -0.126 4.126 29 C -0.130 4.130 30 C -0.124 4.124 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.040 0.960 34 H 0.412 0.588 35 H 0.409 0.591 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.006 0.994 40 H 0.057 0.943 41 H 0.251 0.749 42 H -0.006 1.006 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.386 0.614 47 H 0.140 0.860 48 H 0.143 0.857 49 H 0.140 0.860 50 H 0.136 0.864 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.490 -5.878 30.626 32.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.032 3.968 3 H 0.089 0.911 4 N -0.382 5.382 5 C 0.400 3.600 6 O -0.517 6.517 7 N -0.381 5.381 8 C 0.077 3.923 9 C -0.163 4.163 10 C 0.019 3.981 11 N -0.332 5.332 12 C -0.394 4.394 13 H 0.085 0.915 14 C -0.246 4.246 15 N -0.582 5.582 16 Si 0.797 3.203 17 H -0.214 1.214 18 H -0.217 1.217 19 H -0.194 1.194 20 C 0.052 3.948 21 C -0.167 4.167 22 C 0.097 3.903 23 H 0.131 0.869 24 O -0.364 6.364 25 C -0.126 4.126 26 C -0.133 4.133 27 C -0.144 4.144 28 C -0.144 4.144 29 C -0.147 4.147 30 C -0.142 4.142 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.249 0.751 35 H 0.245 0.755 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.024 0.976 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.012 0.988 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.237 0.763 47 H 0.158 0.842 48 H 0.161 0.839 49 H 0.157 0.843 50 H 0.154 0.846 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.004 -4.977 30.458 31.647 hybrid contribution -0.070 -0.369 -1.153 1.212 sum -7.074 -5.346 29.306 30.618 Atomic orbital electron populations 1.22250 0.94546 1.03173 1.02641 1.21369 0.95160 0.96737 0.83518 0.91056 1.44939 1.71296 1.14261 1.07654 1.16148 0.78055 0.84669 0.81080 1.90896 1.58897 1.16518 1.85348 1.45138 1.70241 1.14275 1.08468 1.20471 0.95214 0.95109 0.81540 1.22172 0.97001 1.00840 0.96256 1.20962 0.91402 0.93939 0.91844 1.44342 1.07080 1.72164 1.09604 1.19513 0.96730 1.36514 0.86603 0.91506 1.25827 0.97728 1.00066 1.00945 1.70185 1.07558 1.42347 1.38064 0.85254 0.76658 0.78785 0.79583 1.21365 1.21749 1.19368 1.20566 0.87441 0.95566 0.91207 1.22253 0.98045 1.00086 0.96328 1.20872 0.98812 0.81812 0.88811 0.86887 1.86608 1.26940 1.26381 1.96475 1.20395 0.95653 0.98802 0.97729 1.21164 0.95553 1.00050 0.96508 1.21458 1.00625 0.96352 0.95983 1.21528 0.93939 0.98410 1.00556 1.21424 0.97424 0.99785 0.96111 1.21238 0.99987 0.96393 0.96599 0.90165 0.89970 0.94095 0.75147 0.75483 0.92759 0.91587 0.92492 0.97622 0.92425 0.94012 0.98804 0.91776 0.90564 0.91091 0.76272 0.84185 0.83922 0.84257 0.84573 0.85423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 8.38 71.98 0.60 -2.09 16 2 C 0.14 2.49 2.44 44.99 0.11 2.60 16 3 H 0.07 1.70 7.58 -2.39 -0.02 1.68 16 4 N -0.72 -14.32 5.06 -457.80 -2.32 -16.64 16 5 C 0.70 20.23 8.49 179.06 1.52 21.75 16 6 O -0.64 -24.47 15.67 -3.98 -0.06 -24.53 16 7 N -0.73 -19.55 5.08 -457.68 -2.33 -21.88 16 8 C 0.18 6.35 2.42 45.02 0.11 6.46 16 9 C -0.12 -4.49 5.65 30.67 0.17 -4.32 16 10 C 0.14 6.41 6.52 86.36 0.56 6.98 16 11 N -0.61 -31.09 2.99 -699.09 -2.09 -33.19 16 12 C -0.26 -14.58 9.58 84.03 0.81 -13.77 16 13 H 0.07 3.60 7.89 -2.91 -0.02 3.57 16 14 C -0.05 -2.81 4.92 84.86 0.42 -2.40 16 15 N -0.94 -55.47 11.19 21.65 0.24 -55.22 16 16 Si 0.97 44.68 29.59 68.60 2.03 46.71 16 17 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 18 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 20 C 0.18 8.62 5.30 86.36 0.46 9.08 16 21 C -0.13 -4.59 5.55 30.67 0.17 -4.42 16 22 C 0.16 2.13 3.16 29.85 0.09 2.23 16 23 H 0.11 1.58 8.05 -2.39 -0.02 1.56 16 24 O -0.56 -6.74 12.77 -148.98 -1.90 -8.65 16 25 C -0.12 -1.72 4.73 -19.87 -0.09 -1.82 16 26 C -0.11 -1.29 7.38 22.27 0.16 -1.13 16 27 C -0.13 -1.35 10.05 22.27 0.22 -1.12 16 28 C -0.13 -1.43 10.05 22.27 0.22 -1.20 16 29 C -0.13 -1.66 10.05 22.27 0.22 -1.43 16 30 C -0.12 -1.79 9.68 22.27 0.22 -1.58 16 31 H 0.08 0.89 6.71 -2.39 -0.02 0.88 16 32 H 0.08 1.11 5.91 -2.39 -0.01 1.10 16 33 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.41 6.03 8.40 -92.71 -0.78 5.25 16 35 H 0.41 8.25 8.62 -92.71 -0.80 7.45 16 36 H 0.05 2.22 7.58 -2.38 -0.02 2.20 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 40 H 0.06 2.48 7.93 -2.39 -0.02 2.46 16 41 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 42 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 43 H 0.06 3.45 6.06 -2.39 -0.01 3.43 16 44 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 45 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.39 2.61 5.54 -74.06 -0.41 2.20 16 47 H 0.14 0.92 6.16 -2.91 -0.02 0.90 16 48 H 0.14 0.88 8.06 -2.91 -0.02 0.86 16 49 H 0.14 0.99 8.06 -2.91 -0.02 0.96 16 50 H 0.14 1.27 8.06 -2.91 -0.02 1.24 16 51 H 0.13 1.63 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -73.37 401.97 -1.48 -74.85 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: -1.03 Total: 24.73 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 5.98 Total: 13.82 kcal Atomic # 7 Polarization: -120.43 SS G_CDS: -6.49 Total: -126.93 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -1.96 Total: -33.18 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -73.37 -1.48 -74.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812035028.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.548 kcal (2) G-P(sol) polarization free energy of solvation -73.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds