Wall clock time and date at job start Wed Apr 1 2020 04:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47595 * 2 1 4 4 N 1.46501 * 109.47003 * 120.00570 * 2 1 3 5 5 C 1.34774 * 120.00117 * 274.99579 * 4 2 1 6 6 O 1.21593 * 119.99808 * 0.02562 * 5 4 2 7 7 N 1.34771 * 120.00330 * 180.02562 * 5 4 2 8 8 C 1.46498 * 120.00229 * 180.02562 * 7 5 4 9 9 C 1.53049 * 109.45932 * 275.02732 * 8 7 5 10 10 C 1.53190 * 109.31050 * 178.60037 * 9 8 7 11 11 N 1.46924 * 108.76695 * 54.65919 * 10 9 8 12 12 C 1.36933 * 120.63652 * 126.40343 * 11 10 9 13 13 H 1.08000 * 119.99692 * 331.82371 * 12 11 10 14 14 C 1.38817 * 120.00384 * 151.82000 * 12 11 10 15 15 N 1.31614 * 119.99814 * 343.07756 * 14 12 11 16 16 Si 1.86791 * 120.00005 * 163.07483 * 14 12 11 17 17 H 1.48497 * 109.47171 * 90.00079 * 16 14 12 18 18 H 1.48504 * 109.47339 * 210.00425 * 16 14 12 19 19 H 1.48504 * 109.47415 * 330.00410 * 16 14 12 20 20 C 1.46929 * 118.73576 * 306.37667 * 11 10 9 21 21 C 1.53039 * 109.46273 * 154.97580 * 8 7 5 22 22 C 1.53005 * 109.46888 * 240.00077 * 2 1 3 23 23 H 1.09005 * 109.46890 * 65.00371 * 22 2 1 24 24 O 1.42900 * 109.47181 * 305.00215 * 22 2 1 25 25 C 1.50703 * 109.47154 * 184.99895 * 22 2 1 26 26 C 1.38237 * 119.99515 * 84.72696 * 25 22 2 27 27 C 1.38235 * 119.99650 * 179.80640 * 26 25 22 28 28 C 1.38234 * 119.99969 * 0.40587 * 27 26 25 29 29 C 1.38229 * 120.00045 * 359.85028 * 28 27 26 30 30 C 1.38230 * 120.00240 * 265.00430 * 25 22 2 31 31 H 1.08998 * 109.46823 * 299.99636 * 1 2 3 32 32 H 1.09003 * 109.47080 * 59.99253 * 1 2 3 33 33 H 1.09001 * 109.47458 * 179.97438 * 1 2 3 34 34 H 0.97007 * 119.99762 * 94.99953 * 4 2 1 35 35 H 0.97001 * 119.99793 * 359.97438 * 7 5 4 36 36 H 1.09000 * 109.46264 * 34.99824 * 8 7 5 37 37 H 1.09001 * 109.49495 * 298.56283 * 9 8 7 38 38 H 1.08996 * 109.49833 * 58.65843 * 9 8 7 39 39 H 1.08995 * 109.59818 * 294.86645 * 10 9 8 40 40 H 1.09004 * 109.69670 * 174.50607 * 10 9 8 41 41 H 0.96998 * 120.00500 * 179.97438 * 15 14 12 42 42 H 1.08998 * 109.58727 * 293.82698 * 20 11 10 43 43 H 1.09006 * 109.70190 * 173.46735 * 20 11 10 44 44 H 1.09000 * 109.49564 * 301.33655 * 21 8 7 45 45 H 1.08999 * 109.49948 * 61.43048 * 21 8 7 46 46 H 0.96698 * 113.99999 * 299.99888 * 24 22 2 47 47 H 1.08001 * 120.00025 * 0.02562 * 26 25 22 48 48 H 1.08000 * 120.00002 * 180.23413 * 27 26 25 49 49 H 1.08003 * 119.99712 * 179.83569 * 28 27 26 50 50 H 1.08001 * 119.99876 * 179.97438 * 29 28 27 51 51 H 1.08001 * 120.00450 * 359.97438 * 30 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0185 2.3571 6 8 1.8575 1.1612 2.4119 7 7 2.5968 -0.6538 3.4574 8 6 2.7362 0.0768 4.7195 9 6 4.0929 0.7845 4.7518 10 6 4.2207 1.5756 6.0574 11 7 3.9886 0.6647 7.1866 12 6 4.9042 0.5617 8.1996 13 1 5.9488 0.7547 8.0049 14 6 4.4897 0.2094 9.4767 15 7 3.2178 0.2975 9.8035 16 14 5.7370 -0.3899 10.7314 17 1 6.2691 0.7686 11.4927 18 1 5.0813 -1.3384 11.6673 19 1 6.8524 -1.0767 10.0315 20 6 2.7550 -0.1332 7.2085 21 6 2.6435 -0.9049 5.8899 22 6 2.0399 -0.7213 -1.2493 23 1 1.7516 -0.1582 -2.1370 24 8 1.4701 -2.0303 -1.3095 25 6 3.5419 -0.8294 -1.1890 26 6 4.1325 -1.8726 -0.5007 27 6 5.5102 -1.9741 -0.4488 28 6 6.2971 -1.0277 -1.0780 29 6 5.7065 0.0183 -1.7618 30 6 4.3288 0.1176 -1.8171 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5140 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2490 -1.6320 1.1524 35 1 2.8274 -1.5950 3.4137 36 1 1.9392 0.8158 4.8014 37 1 4.8908 0.0441 4.6952 38 1 4.1678 1.4663 3.9046 39 1 3.4799 2.3750 6.0745 40 1 5.2208 2.0025 6.1319 41 1 2.9280 0.0510 10.6958 42 1 1.8948 0.5269 7.3195 43 1 2.7865 -0.8357 8.0415 44 1 1.6867 -1.4257 5.8529 45 1 3.4553 -1.6292 5.8224 46 1 1.6857 -2.5885 -0.5499 47 1 3.5177 -2.6103 -0.0066 48 1 5.9717 -2.7912 0.0858 49 1 7.3735 -1.1056 -1.0352 50 1 6.3214 0.7579 -2.2531 51 1 3.8674 0.9350 -2.3515 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812035029.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:15 Heat of formation + Delta-G solvation = -35.406923 kcal Electronic energy + Delta-G solvation = -31320.779303 eV Core-core repulsion = 27220.397163 eV Total energy + Delta-G solvation = -4100.382139 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.69231 -39.55441 -37.94129 -37.19175 -34.72412 -34.25775 -32.36929 -31.76634 -31.20016 -30.68984 -29.94246 -29.03395 -26.46980 -25.00823 -23.07057 -22.75670 -22.20988 -21.87621 -21.09121 -20.49794 -19.46137 -18.52644 -17.89017 -17.04365 -16.59288 -16.14808 -15.65934 -15.46693 -15.21676 -14.88781 -14.59899 -14.48004 -14.05179 -13.87364 -13.71890 -13.56097 -13.50396 -13.41502 -12.97168 -12.85717 -12.48469 -12.44530 -12.34016 -12.18769 -11.81494 -11.45765 -11.41894 -11.26022 -11.10527 -10.84451 -10.70324 -10.50212 -10.48909 -10.25852 -10.03473 -10.00042 -9.73831 -9.52975 -9.29989 -9.16014 -9.03143 -8.59989 -8.43041 -6.67262 -5.79162 -3.21058 0.99846 1.08681 2.72455 3.37163 3.38457 3.41865 3.44172 3.46363 3.93987 4.11144 4.32477 4.44825 4.49076 4.49850 4.65504 4.80082 4.95376 5.10185 5.12812 5.21795 5.34207 5.34936 5.42142 5.51802 5.52938 5.62855 5.63345 5.68164 5.78106 5.91779 6.07867 6.10114 6.12468 6.16762 6.21639 6.30811 6.37612 6.41246 6.50789 6.59546 6.62913 6.65855 6.82034 6.89599 7.00617 7.05681 7.10469 7.32935 7.62658 7.79663 8.13367 8.45199 8.76751 9.21383 9.84729 10.42063 11.29833 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015144 B = 0.002483 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.496181 B =11274.121441 C =12280.934221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.135 3.865 3 H 0.097 0.903 4 N -0.746 5.746 5 C 0.705 3.295 6 O -0.588 6.588 7 N -0.739 5.739 8 C 0.170 3.830 9 C -0.138 4.138 10 C 0.148 3.852 11 N -0.593 5.593 12 C -0.252 4.252 13 H 0.065 0.935 14 C 0.002 3.998 15 N -0.903 5.903 16 Si 0.902 3.098 17 H -0.287 1.287 18 H -0.290 1.290 19 H -0.280 1.280 20 C 0.175 3.825 21 C -0.146 4.146 22 C 0.141 3.859 23 H 0.121 0.879 24 O -0.547 6.547 25 C -0.112 4.112 26 C -0.110 4.110 27 C -0.113 4.113 28 C -0.119 4.119 29 C -0.115 4.115 30 C -0.109 4.109 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.385 0.615 35 H 0.389 0.611 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.020 0.980 40 H 0.055 0.945 41 H 0.254 0.746 42 H 0.021 0.979 43 H 0.091 0.909 44 H 0.053 0.947 45 H 0.058 0.942 46 H 0.370 0.630 47 H 0.114 0.886 48 H 0.123 0.877 49 H 0.122 0.878 50 H 0.123 0.877 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.704 -6.321 -25.052 25.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.030 3.970 3 H 0.115 0.885 4 N -0.403 5.403 5 C 0.405 3.595 6 O -0.466 6.466 7 N -0.392 5.392 8 C 0.066 3.934 9 C -0.178 4.178 10 C 0.021 3.979 11 N -0.315 5.315 12 C -0.381 4.381 13 H 0.083 0.917 14 C -0.197 4.197 15 N -0.548 5.548 16 Si 0.732 3.268 17 H -0.214 1.214 18 H -0.216 1.216 19 H -0.205 1.205 20 C 0.049 3.951 21 C -0.186 4.186 22 C 0.081 3.919 23 H 0.139 0.861 24 O -0.352 6.352 25 C -0.112 4.112 26 C -0.128 4.128 27 C -0.131 4.131 28 C -0.137 4.137 29 C -0.133 4.133 30 C -0.127 4.127 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.220 0.780 35 H 0.222 0.778 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.038 0.962 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.039 0.961 43 H 0.109 0.891 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.218 0.782 47 H 0.132 0.868 48 H 0.141 0.859 49 H 0.140 0.860 50 H 0.141 0.859 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.288 -5.004 -25.369 25.889 hybrid contribution 1.164 -1.387 1.203 2.174 sum -0.124 -6.391 -24.166 24.997 Atomic orbital electron populations 1.22102 0.94375 1.02648 1.02599 1.21436 0.94696 0.97918 0.82995 0.88467 1.45169 1.72796 1.13104 1.09252 1.15955 0.78168 0.85165 0.80174 1.90920 1.57117 1.14241 1.84302 1.45533 1.70383 1.13476 1.09768 1.20898 0.98169 0.94073 0.80273 1.22376 0.96488 0.99663 0.99312 1.20874 0.98904 0.91599 0.86558 1.44091 1.21582 1.44188 1.21685 1.19178 0.88645 1.42960 0.87353 0.91709 1.25050 0.96081 1.01831 0.96721 1.70022 1.14299 1.50873 1.19579 0.86310 0.80752 0.78536 0.81251 1.21395 1.21577 1.20522 1.20730 0.87897 0.93823 0.92688 1.22541 1.00307 0.98432 0.97304 1.21237 0.87666 0.84570 0.98417 0.86114 1.86659 1.75612 1.24587 1.48369 1.20419 0.96048 0.96210 0.98561 1.20745 0.95012 0.97841 0.99180 1.21127 0.93619 0.99165 0.99217 1.21200 1.00042 0.94828 0.97615 1.21158 0.94783 0.98200 0.99197 1.20955 0.93847 0.98434 0.99497 0.91639 0.91752 0.91902 0.78037 0.77816 0.90118 0.92552 0.92789 0.96201 0.92658 0.93613 0.96128 0.89073 0.92814 0.92289 0.78199 0.86794 0.85853 0.85992 0.85910 0.85880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.29 37.16 0.35 -1.12 16 2 C 0.14 1.27 2.47 -67.93 -0.17 1.10 16 3 H 0.10 1.11 7.58 -51.93 -0.39 0.72 16 4 N -0.75 -7.46 4.27 -58.68 -0.25 -7.71 16 5 C 0.71 10.27 8.50 -86.93 -0.74 9.53 16 6 O -0.59 -11.14 15.67 5.28 0.08 -11.05 16 7 N -0.74 -10.28 5.08 -58.63 -0.30 -10.58 16 8 C 0.17 2.98 2.42 -67.89 -0.16 2.82 16 9 C -0.14 -2.58 5.65 -26.61 -0.15 -2.73 16 10 C 0.15 3.23 6.52 -3.71 -0.02 3.20 16 11 N -0.59 -14.88 2.99 -172.32 -0.52 -15.39 16 12 C -0.25 -6.90 9.58 -15.06 -0.14 -7.04 16 13 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 14 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 15 N -0.90 -26.07 11.19 55.49 0.62 -25.45 16 16 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 C 0.18 4.11 5.30 -3.71 -0.02 4.09 16 21 C -0.15 -2.66 5.55 -26.61 -0.15 -2.81 16 22 C 0.14 1.06 3.12 -27.88 -0.09 0.97 16 23 H 0.12 0.79 8.05 -51.93 -0.42 0.37 16 24 O -0.55 -4.09 12.26 -35.23 -0.43 -4.52 16 25 C -0.11 -0.94 4.78 -104.62 -0.50 -1.44 16 26 C -0.11 -0.87 8.17 -39.58 -0.32 -1.19 16 27 C -0.11 -0.94 10.05 -39.58 -0.40 -1.34 16 28 C -0.12 -1.00 10.05 -39.59 -0.40 -1.40 16 29 C -0.12 -0.97 10.05 -39.59 -0.40 -1.37 16 30 C -0.11 -0.93 9.68 -39.59 -0.38 -1.31 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.55 7.56 -51.93 -0.39 0.15 16 34 H 0.39 2.80 5.62 -40.82 -0.23 2.57 16 35 H 0.39 4.29 8.62 -40.82 -0.35 3.94 16 36 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.05 1.18 7.93 -51.93 -0.41 0.77 16 41 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.09 2.37 6.07 -51.93 -0.31 2.06 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.37 1.85 6.26 45.56 0.29 2.14 16 47 H 0.11 0.63 5.62 -52.49 -0.30 0.34 16 48 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 49 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 50 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 51 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 402.88 15.07 6.07 6.07 Total: -1.00 -33.51 402.88 -11.07 -44.58 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -7.54 Total: 7.64 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -3.78 Total: -0.07 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -0.44 Total: -59.13 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.35 Total: -15.57 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.51 -11.07 -44.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812035029.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.172 kcal (2) G-P(sol) polarization free energy of solvation -33.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds