Wall clock time and date at job start Wed Apr 1 2020 04:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47595 * 2 1 4 4 N 1.46501 * 109.47003 * 120.00570 * 2 1 3 5 5 C 1.34774 * 120.00117 * 274.99579 * 4 2 1 6 6 O 1.21593 * 119.99808 * 0.02562 * 5 4 2 7 7 N 1.34771 * 120.00330 * 180.02562 * 5 4 2 8 8 C 1.46498 * 120.00229 * 180.02562 * 7 5 4 9 9 C 1.53049 * 109.45932 * 275.02732 * 8 7 5 10 10 C 1.53190 * 109.31050 * 178.60037 * 9 8 7 11 11 N 1.46924 * 108.76695 * 54.65919 * 10 9 8 12 12 C 1.36933 * 120.63652 * 126.40343 * 11 10 9 13 13 H 1.08000 * 119.99692 * 331.82371 * 12 11 10 14 14 C 1.38817 * 120.00384 * 151.82000 * 12 11 10 15 15 N 1.31614 * 119.99814 * 343.07756 * 14 12 11 16 16 Si 1.86791 * 120.00005 * 163.07483 * 14 12 11 17 17 H 1.48497 * 109.47171 * 90.00079 * 16 14 12 18 18 H 1.48504 * 109.47339 * 210.00425 * 16 14 12 19 19 H 1.48504 * 109.47415 * 330.00410 * 16 14 12 20 20 C 1.46929 * 118.73576 * 306.37667 * 11 10 9 21 21 C 1.53039 * 109.46273 * 154.97580 * 8 7 5 22 22 C 1.53005 * 109.46888 * 240.00077 * 2 1 3 23 23 H 1.09005 * 109.46890 * 65.00371 * 22 2 1 24 24 O 1.42900 * 109.47181 * 305.00215 * 22 2 1 25 25 C 1.50703 * 109.47154 * 184.99895 * 22 2 1 26 26 C 1.38237 * 119.99515 * 84.72696 * 25 22 2 27 27 C 1.38235 * 119.99650 * 179.80640 * 26 25 22 28 28 C 1.38234 * 119.99969 * 0.40587 * 27 26 25 29 29 C 1.38229 * 120.00045 * 359.85028 * 28 27 26 30 30 C 1.38230 * 120.00240 * 265.00430 * 25 22 2 31 31 H 1.08998 * 109.46823 * 299.99636 * 1 2 3 32 32 H 1.09003 * 109.47080 * 59.99253 * 1 2 3 33 33 H 1.09001 * 109.47458 * 179.97438 * 1 2 3 34 34 H 0.97007 * 119.99762 * 94.99953 * 4 2 1 35 35 H 0.97001 * 119.99793 * 359.97438 * 7 5 4 36 36 H 1.09000 * 109.46264 * 34.99824 * 8 7 5 37 37 H 1.09001 * 109.49495 * 298.56283 * 9 8 7 38 38 H 1.08996 * 109.49833 * 58.65843 * 9 8 7 39 39 H 1.08995 * 109.59818 * 294.86645 * 10 9 8 40 40 H 1.09004 * 109.69670 * 174.50607 * 10 9 8 41 41 H 0.96998 * 120.00500 * 179.97438 * 15 14 12 42 42 H 1.08998 * 109.58727 * 293.82698 * 20 11 10 43 43 H 1.09006 * 109.70190 * 173.46735 * 20 11 10 44 44 H 1.09000 * 109.49564 * 301.33655 * 21 8 7 45 45 H 1.08999 * 109.49948 * 61.43048 * 21 8 7 46 46 H 0.96698 * 113.99999 * 299.99888 * 24 22 2 47 47 H 1.08001 * 120.00025 * 0.02562 * 26 25 22 48 48 H 1.08000 * 120.00002 * 180.23413 * 27 26 25 49 49 H 1.08003 * 119.99712 * 179.83569 * 28 27 26 50 50 H 1.08001 * 119.99876 * 179.97438 * 29 28 27 51 51 H 1.08001 * 120.00450 * 359.97438 * 30 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0185 2.3571 6 8 1.8575 1.1612 2.4119 7 7 2.5968 -0.6538 3.4574 8 6 2.7362 0.0768 4.7195 9 6 4.0929 0.7845 4.7518 10 6 4.2207 1.5756 6.0574 11 7 3.9886 0.6647 7.1866 12 6 4.9042 0.5617 8.1996 13 1 5.9488 0.7547 8.0049 14 6 4.4897 0.2094 9.4767 15 7 3.2178 0.2975 9.8035 16 14 5.7370 -0.3899 10.7314 17 1 6.2691 0.7686 11.4927 18 1 5.0813 -1.3384 11.6673 19 1 6.8524 -1.0767 10.0315 20 6 2.7550 -0.1332 7.2085 21 6 2.6435 -0.9049 5.8899 22 6 2.0399 -0.7213 -1.2493 23 1 1.7516 -0.1582 -2.1370 24 8 1.4701 -2.0303 -1.3095 25 6 3.5419 -0.8294 -1.1890 26 6 4.1325 -1.8726 -0.5007 27 6 5.5102 -1.9741 -0.4488 28 6 6.2971 -1.0277 -1.0780 29 6 5.7065 0.0183 -1.7618 30 6 4.3288 0.1176 -1.8171 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5140 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2490 -1.6320 1.1524 35 1 2.8274 -1.5950 3.4137 36 1 1.9392 0.8158 4.8014 37 1 4.8908 0.0441 4.6952 38 1 4.1678 1.4663 3.9046 39 1 3.4799 2.3750 6.0745 40 1 5.2208 2.0025 6.1319 41 1 2.9280 0.0510 10.6958 42 1 1.8948 0.5269 7.3195 43 1 2.7865 -0.8357 8.0415 44 1 1.6867 -1.4257 5.8529 45 1 3.4553 -1.6292 5.8224 46 1 1.6857 -2.5885 -0.5499 47 1 3.5177 -2.6103 -0.0066 48 1 5.9717 -2.7912 0.0858 49 1 7.3735 -1.1056 -1.0352 50 1 6.3214 0.7579 -2.2531 51 1 3.8674 0.9350 -2.3515 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812035029.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:14 Heat of formation + Delta-G solvation = -57.939995 kcal Electronic energy + Delta-G solvation = -31321.756410 eV Core-core repulsion = 27220.397163 eV Total energy + Delta-G solvation = -4101.359247 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.58277 -40.49777 -39.16055 -38.24044 -36.03846 -35.42836 -33.97906 -32.64346 -31.93263 -31.75920 -31.49171 -30.52137 -27.13439 -26.85406 -24.25196 -23.84443 -23.50529 -22.97006 -22.02658 -21.50740 -21.03901 -19.67349 -18.78644 -18.46162 -17.75362 -16.91698 -16.76114 -16.53815 -16.31405 -16.23052 -15.80699 -15.42257 -15.32504 -15.14520 -15.01496 -14.75746 -14.52229 -14.41312 -14.15508 -14.03473 -14.02158 -13.41545 -13.18715 -13.15528 -13.01323 -12.87324 -12.60853 -12.51090 -12.44921 -12.22857 -12.06002 -12.00549 -11.88068 -11.87113 -11.55049 -11.38149 -11.21209 -11.11247 -10.55656 -10.30279 -9.84587 -9.73465 -9.64384 -8.70665 -7.87688 -5.33396 0.39450 0.49589 1.48577 1.49698 1.59863 1.67604 2.21749 2.52340 2.81810 3.20239 3.30053 3.42654 3.52980 3.66770 3.81096 3.90873 3.92947 4.07231 4.11654 4.25581 4.30406 4.35095 4.40275 4.46415 4.48616 4.61948 4.65059 4.76893 4.77605 4.82172 4.85718 4.96208 5.04588 5.06601 5.07239 5.12954 5.16434 5.29373 5.32290 5.46826 5.50259 5.53963 5.61206 5.62521 5.63292 5.64815 5.70610 6.01336 6.09206 6.39133 6.60769 7.12758 7.14646 7.64463 7.83959 8.37259 9.19528 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015144 B = 0.002483 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.496181 B =11274.121441 C =12280.934221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.137 3.863 3 H 0.076 0.924 4 N -0.724 5.724 5 C 0.704 3.296 6 O -0.634 6.634 7 N -0.726 5.726 8 C 0.183 3.817 9 C -0.121 4.121 10 C 0.145 3.855 11 N -0.608 5.608 12 C -0.265 4.265 13 H 0.067 0.933 14 C -0.049 4.049 15 N -0.935 5.935 16 Si 0.969 3.031 17 H -0.287 1.287 18 H -0.291 1.291 19 H -0.268 1.268 20 C 0.180 3.820 21 C -0.127 4.127 22 C 0.156 3.844 23 H 0.133 0.867 24 O -0.552 6.552 25 C -0.124 4.124 26 C -0.118 4.118 27 C -0.127 4.127 28 C -0.133 4.133 29 C -0.130 4.130 30 C -0.124 4.124 31 H 0.036 0.964 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.403 0.597 35 H 0.408 0.592 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.005 0.995 40 H 0.056 0.944 41 H 0.251 0.749 42 H -0.007 1.007 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.381 0.619 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.133 0.867 50 H 0.135 0.865 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.005 -8.313 -26.707 27.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.032 3.968 3 H 0.094 0.906 4 N -0.382 5.382 5 C 0.404 3.596 6 O -0.515 6.515 7 N -0.380 5.380 8 C 0.078 3.922 9 C -0.161 4.161 10 C 0.019 3.981 11 N -0.332 5.332 12 C -0.395 4.395 13 H 0.085 0.915 14 C -0.245 4.245 15 N -0.581 5.581 16 Si 0.797 3.203 17 H -0.214 1.214 18 H -0.217 1.217 19 H -0.193 1.193 20 C 0.053 3.947 21 C -0.166 4.166 22 C 0.096 3.904 23 H 0.151 0.849 24 O -0.358 6.358 25 C -0.124 4.124 26 C -0.136 4.136 27 C -0.145 4.145 28 C -0.151 4.151 29 C -0.148 4.148 30 C -0.142 4.142 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.240 0.760 35 H 0.244 0.756 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.023 0.977 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.011 0.989 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.231 0.769 47 H 0.155 0.845 48 H 0.155 0.845 49 H 0.151 0.849 50 H 0.153 0.847 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.565 -7.059 -27.083 27.993 hybrid contribution 0.934 -0.709 1.662 2.034 sum 0.368 -7.767 -25.420 26.583 Atomic orbital electron populations 1.22045 0.94079 1.03055 1.02000 1.21481 0.94822 0.97172 0.83348 0.90607 1.44941 1.71507 1.13764 1.08011 1.16084 0.77829 0.84673 0.81052 1.90902 1.58958 1.16513 1.85106 1.45098 1.70379 1.14138 1.08428 1.20450 0.96555 0.93535 0.81705 1.22153 0.97420 0.99433 0.97123 1.20953 0.98445 0.91421 0.87305 1.44346 1.21593 1.45227 1.22044 1.19511 0.89229 1.42573 0.88170 0.91548 1.25821 0.97812 1.02278 0.98546 1.70182 1.16121 1.52017 1.19810 0.85260 0.78647 0.77741 0.78667 1.21413 1.21709 1.19309 1.20557 0.86427 0.92997 0.94697 1.22249 1.02071 0.97895 0.94423 1.21089 0.87160 0.84610 0.97525 0.84948 1.86658 1.75574 1.24449 1.49150 1.20583 0.96403 0.96527 0.98918 1.21061 0.95310 0.98157 0.99031 1.21417 0.94036 0.99605 0.99400 1.21486 1.00930 0.95011 0.97694 1.21422 0.95154 0.98707 0.99504 1.21243 0.94166 0.98996 0.99796 0.94458 0.90172 0.90894 0.76005 0.75563 0.92816 0.91669 0.92718 0.97680 0.92554 0.93989 0.98899 0.91793 0.90483 0.91057 0.76911 0.84487 0.84463 0.84885 0.84708 0.84694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.29 71.98 0.67 -1.94 16 2 C 0.14 2.36 2.47 44.99 0.11 2.47 16 3 H 0.08 1.69 7.58 -2.39 -0.02 1.68 16 4 N -0.72 -12.97 4.27 -457.82 -1.95 -14.92 16 5 C 0.70 19.51 8.50 179.06 1.52 21.03 16 6 O -0.63 -23.97 15.67 -4.01 -0.06 -24.03 16 7 N -0.73 -18.68 5.08 -457.68 -2.33 -21.00 16 8 C 0.18 6.26 2.42 45.02 0.11 6.37 16 9 C -0.12 -4.41 5.65 30.67 0.17 -4.24 16 10 C 0.14 6.41 6.52 86.36 0.56 6.97 16 11 N -0.61 -30.93 2.99 -699.09 -2.09 -33.02 16 12 C -0.26 -14.58 9.58 84.04 0.81 -13.78 16 13 H 0.07 3.56 7.88 -2.91 -0.02 3.54 16 14 C -0.05 -2.73 4.92 84.86 0.42 -2.31 16 15 N -0.94 -55.15 11.19 21.65 0.24 -54.91 16 16 Si 0.97 44.36 29.59 68.60 2.03 46.39 16 17 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 20 C 0.18 8.58 5.30 86.36 0.46 9.04 16 21 C -0.13 -4.46 5.55 30.67 0.17 -4.29 16 22 C 0.16 1.98 3.12 29.85 0.09 2.07 16 23 H 0.13 1.41 8.05 -2.38 -0.02 1.39 16 24 O -0.55 -6.50 12.26 -148.98 -1.83 -8.33 16 25 C -0.12 -1.82 4.78 -19.87 -0.09 -1.92 16 26 C -0.12 -1.57 8.17 22.27 0.18 -1.38 16 27 C -0.13 -1.84 10.05 22.27 0.22 -1.61 16 28 C -0.13 -2.06 10.05 22.27 0.22 -1.83 16 29 C -0.13 -2.03 10.05 22.27 0.22 -1.80 16 30 C -0.12 -1.93 9.68 22.27 0.22 -1.71 16 31 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.09 7.56 -2.39 -0.02 1.07 16 34 H 0.40 4.53 5.62 -92.70 -0.52 4.00 16 35 H 0.41 7.58 8.62 -92.71 -0.80 6.78 16 36 H 0.05 2.17 7.58 -2.39 -0.02 2.16 16 37 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.06 2.42 7.93 -2.39 -0.02 2.41 16 41 H 0.25 14.29 8.31 -92.71 -0.77 13.51 16 42 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 43 H 0.06 3.40 6.07 -2.38 -0.01 3.39 16 44 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 46 H 0.38 2.41 6.26 -74.06 -0.46 1.95 16 47 H 0.14 1.02 5.62 -2.91 -0.02 1.01 16 48 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 49 H 0.13 1.62 8.06 -2.91 -0.02 1.59 16 50 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 51 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -74.00 402.88 -0.75 -74.75 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: -0.83 Total: 23.96 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 6.06 Total: 11.11 kcal Atomic # 7 Polarization: -117.73 SS G_CDS: -6.13 Total: -123.86 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -1.89 Total: -32.36 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -74.00 -0.75 -74.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812035029.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.813 kcal (2) G-P(sol) polarization free energy of solvation -73.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds