Wall clock time and date at job start Wed Apr 1 2020 04:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47536 * 2 1 4 4 N 1.46505 * 109.46964 * 239.99415 * 2 1 3 5 5 C 1.34778 * 119.99656 * 85.00645 * 4 2 1 6 6 O 1.21582 * 119.99895 * 359.97438 * 5 4 2 7 7 N 1.34776 * 119.99525 * 179.97438 * 5 4 2 8 8 C 1.46503 * 119.99566 * 179.97438 * 7 5 4 9 9 C 1.53037 * 109.46209 * 275.02590 * 8 7 5 10 10 C 1.53186 * 109.31560 * 178.60093 * 9 8 7 11 11 N 1.46928 * 108.76466 * 54.65940 * 10 9 8 12 12 C 1.36931 * 120.63469 * 126.36324 * 11 10 9 13 13 H 1.07997 * 119.99984 * 331.85359 * 12 11 10 14 14 C 1.38808 * 120.00100 * 151.85814 * 12 11 10 15 15 N 1.31619 * 120.00404 * 343.07030 * 14 12 11 16 16 Si 1.86806 * 120.00124 * 163.07339 * 14 12 11 17 17 H 1.48492 * 109.47283 * 59.99558 * 16 14 12 18 18 H 1.48495 * 109.47053 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46848 * 299.99757 * 16 14 12 20 20 C 1.46932 * 118.73603 * 306.38123 * 11 10 9 21 21 C 1.53035 * 109.45847 * 154.97117 * 8 7 5 22 22 C 1.53003 * 109.46920 * 119.99725 * 2 1 3 23 23 H 1.08995 * 109.47092 * 300.00111 * 22 2 1 24 24 O 1.42910 * 109.47282 * 59.99927 * 22 2 1 25 25 C 1.50700 * 109.47039 * 179.97438 * 22 2 1 26 26 C 1.38235 * 120.00103 * 279.72434 * 25 22 2 27 27 C 1.38234 * 120.00222 * 179.78683 * 26 25 22 28 28 C 1.38240 * 119.99927 * 0.44773 * 27 26 25 29 29 C 1.38242 * 119.99825 * 359.80739 * 28 27 26 30 30 C 1.38236 * 119.99844 * 359.97438 * 29 28 27 31 31 H 1.08996 * 109.47125 * 60.00377 * 1 2 3 32 32 H 1.08998 * 109.47504 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47287 * 300.00711 * 1 2 3 34 34 H 0.97004 * 119.99753 * 264.99844 * 4 2 1 35 35 H 0.97001 * 120.00445 * 359.97438 * 7 5 4 36 36 H 1.09001 * 109.45864 * 34.99910 * 8 7 5 37 37 H 1.09003 * 109.49868 * 298.57428 * 9 8 7 38 38 H 1.09010 * 109.49665 * 58.65903 * 9 8 7 39 39 H 1.08998 * 109.60002 * 294.86982 * 10 9 8 40 40 H 1.09007 * 109.70446 * 174.50249 * 10 9 8 41 41 H 0.96996 * 120.00303 * 180.02562 * 15 14 12 42 42 H 1.09001 * 109.58821 * 293.82654 * 20 11 10 43 43 H 1.09001 * 109.70612 * 173.46557 * 20 11 10 44 44 H 1.09002 * 109.50023 * 301.33855 * 21 8 7 45 45 H 1.09003 * 109.49858 * 61.43735 * 21 8 7 46 46 H 0.96701 * 113.99711 * 59.99866 * 24 22 2 47 47 H 1.07999 * 120.00141 * 0.02562 * 26 25 22 48 48 H 1.08003 * 120.00433 * 180.27523 * 27 26 25 49 49 H 1.07990 * 120.00320 * 179.83571 * 28 27 26 50 50 H 1.07999 * 120.00162 * 180.02562 * 29 28 27 51 51 H 1.08000 * 120.00223 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6908 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8576 1.1612 -2.4118 7 7 2.5968 -0.6538 -3.4574 8 6 2.7363 0.0769 -4.7195 9 6 1.3933 0.0883 -5.4532 10 6 1.5340 0.8828 -6.7553 11 7 2.6430 0.3178 -7.5362 12 6 2.4546 -0.0706 -8.8357 13 1 1.4798 -0.3986 -9.1653 14 6 3.5164 -0.0429 -9.7293 15 7 4.5975 0.6521 -9.4455 16 14 3.4111 -0.9921 -11.3348 17 1 2.2601 -0.4939 -12.1298 18 1 4.6657 -0.8011 -12.1059 19 1 3.2240 -2.4365 -11.0445 20 6 3.9580 0.1771 -6.8960 21 6 3.7899 -0.6091 -5.5920 22 6 2.0399 -0.7212 1.2493 23 1 1.6766 -0.2074 2.1392 24 8 1.5635 -2.0686 1.2494 25 6 3.5469 -0.7218 1.2490 26 6 4.2376 -1.6429 0.4840 27 6 5.6200 -1.6406 0.4803 28 6 6.3117 -0.7231 1.2488 29 6 5.6210 0.1947 2.0180 30 6 4.2386 0.1953 2.0182 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 2.2490 -1.6319 -1.1525 35 1 2.8281 -1.5948 -3.4136 36 1 3.0463 1.1014 -4.5136 37 1 1.0946 -0.9349 -5.6814 38 1 0.6377 0.5559 -4.8217 39 1 1.7439 1.9273 -6.5255 40 1 0.6102 0.8134 -7.3298 41 1 5.3394 0.6717 -10.0701 42 1 4.3655 1.1642 -6.6775 43 1 4.6352 -0.3588 -7.5611 44 1 4.7406 -0.6379 -5.0594 45 1 3.4686 -1.6256 -5.8190 46 1 1.8489 -2.5866 0.4844 47 1 3.6973 -2.3620 -0.1138 48 1 6.1596 -2.3575 -0.1209 49 1 7.3916 -0.7230 1.2480 50 1 6.1613 0.9118 2.6181 51 1 3.6989 0.9120 2.6194 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812035031.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:21 Heat of formation + Delta-G solvation = -34.738857 kcal Electronic energy + Delta-G solvation = -31207.518345 eV Core-core repulsion = 27107.165175 eV Total energy + Delta-G solvation = -4100.353170 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.69854 -39.56169 -37.95354 -37.19126 -34.71699 -34.26160 -32.39127 -31.78580 -31.20665 -30.69953 -29.95121 -29.03921 -26.44332 -25.01388 -23.11802 -22.73993 -22.20432 -21.87644 -21.09763 -20.53307 -19.46369 -18.54462 -17.89512 -17.05549 -16.60994 -16.15609 -15.66205 -15.47550 -15.15312 -14.82791 -14.67250 -14.50696 -14.05005 -13.88512 -13.70287 -13.56219 -13.50453 -13.44444 -13.00225 -12.78369 -12.53613 -12.44425 -12.34529 -12.21446 -11.85231 -11.45164 -11.44134 -11.23814 -11.10115 -10.83664 -10.71111 -10.50162 -10.48115 -10.26814 -10.03716 -10.01176 -9.74290 -9.53247 -9.31428 -9.17505 -9.04196 -8.60076 -8.43046 -6.67525 -5.79013 -3.21138 0.98486 1.07915 2.70611 3.37561 3.38393 3.40995 3.44051 3.45163 3.94298 4.10233 4.31317 4.43203 4.49756 4.49916 4.64869 4.78904 4.95724 5.09118 5.12542 5.21584 5.33297 5.34643 5.41833 5.51415 5.52428 5.61721 5.63158 5.67436 5.77974 5.91388 6.08011 6.09806 6.11674 6.16184 6.20445 6.30496 6.37176 6.39665 6.50313 6.59053 6.62483 6.64831 6.81686 6.88743 7.00266 7.05155 7.09717 7.32716 7.62458 7.79490 8.12288 8.45267 8.75825 9.21406 9.84677 10.41984 11.29938 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016319 B = 0.002365 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.367331 B =11835.477830 C =12807.733842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.136 3.864 3 H 0.097 0.903 4 N -0.746 5.746 5 C 0.706 3.294 6 O -0.587 6.587 7 N -0.739 5.739 8 C 0.170 3.830 9 C -0.139 4.139 10 C 0.148 3.852 11 N -0.592 5.592 12 C -0.252 4.252 13 H 0.065 0.935 14 C 0.002 3.998 15 N -0.904 5.904 16 Si 0.903 3.097 17 H -0.283 1.283 18 H -0.291 1.291 19 H -0.284 1.284 20 C 0.175 3.825 21 C -0.146 4.146 22 C 0.141 3.859 23 H 0.121 0.879 24 O -0.547 6.547 25 C -0.114 4.114 26 C -0.106 4.106 27 C -0.114 4.114 28 C -0.119 4.119 29 C -0.117 4.117 30 C -0.109 4.109 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.385 0.615 35 H 0.389 0.611 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.020 0.980 40 H 0.055 0.945 41 H 0.254 0.746 42 H 0.020 0.980 43 H 0.091 0.909 44 H 0.053 0.947 45 H 0.058 0.942 46 H 0.370 0.630 47 H 0.113 0.887 48 H 0.124 0.876 49 H 0.122 0.878 50 H 0.123 0.877 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.589 -5.954 25.213 25.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.030 3.970 3 H 0.115 0.885 4 N -0.404 5.404 5 C 0.406 3.594 6 O -0.465 6.465 7 N -0.392 5.392 8 C 0.066 3.934 9 C -0.179 4.179 10 C 0.021 3.979 11 N -0.315 5.315 12 C -0.382 4.382 13 H 0.083 0.917 14 C -0.196 4.196 15 N -0.548 5.548 16 Si 0.733 3.267 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.211 1.211 20 C 0.049 3.951 21 C -0.186 4.186 22 C 0.081 3.919 23 H 0.139 0.861 24 O -0.352 6.352 25 C -0.114 4.114 26 C -0.124 4.124 27 C -0.132 4.132 28 C -0.137 4.137 29 C -0.135 4.135 30 C -0.127 4.127 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.219 0.781 35 H 0.222 0.778 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.038 0.962 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.039 0.961 43 H 0.109 0.891 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.218 0.782 47 H 0.131 0.869 48 H 0.142 0.858 49 H 0.140 0.860 50 H 0.141 0.859 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.986 -4.604 25.578 26.008 hybrid contribution 0.610 -1.512 -1.338 2.109 sum -0.376 -6.116 24.240 25.003 Atomic orbital electron populations 1.22114 0.94397 1.02658 1.02626 1.21428 0.94692 0.97911 0.82980 0.88458 1.45173 1.72843 1.13015 1.09331 1.15949 0.78258 0.85159 0.80072 1.90919 1.56801 1.14308 1.84463 1.45538 1.70479 1.13543 1.09612 1.20897 0.96152 0.96108 0.80252 1.22384 0.96327 1.01119 0.98076 1.20876 0.92340 0.94235 0.90483 1.44083 1.05997 1.71663 1.09787 1.19149 0.96608 1.36937 0.85510 0.91710 1.25051 0.97959 0.99027 0.97613 1.70014 1.07086 1.40762 1.36937 0.86366 0.76890 0.80086 0.83402 1.20875 1.21647 1.21081 1.20731 0.88406 0.96576 0.89425 1.22541 0.96543 1.00682 0.98813 1.21245 0.88548 0.83602 0.98458 0.86133 1.86666 1.76390 1.22891 1.49250 1.20434 0.96089 0.97012 0.97908 1.20755 0.94447 0.98550 0.98662 1.21138 0.94128 0.98997 0.98956 1.21204 1.00085 0.95574 0.96792 1.21160 0.94238 0.98800 0.99280 1.20973 0.94442 0.98381 0.98909 0.91592 0.91893 0.91774 0.78090 0.77812 0.90139 0.92505 0.92742 0.96197 0.92624 0.93557 0.96140 0.89078 0.92849 0.92278 0.78246 0.86875 0.85829 0.85985 0.85907 0.85860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.34 37.16 0.35 -1.14 16 2 C 0.14 1.28 2.40 -67.93 -0.16 1.11 16 3 H 0.10 1.12 7.58 -51.93 -0.39 0.73 16 4 N -0.75 -7.41 4.19 -58.67 -0.25 -7.66 16 5 C 0.71 10.21 8.49 -86.92 -0.74 9.48 16 6 O -0.59 -11.10 15.67 5.29 0.08 -11.01 16 7 N -0.74 -10.20 5.08 -58.64 -0.30 -10.50 16 8 C 0.17 2.97 2.42 -67.89 -0.16 2.81 16 9 C -0.14 -2.56 5.65 -26.62 -0.15 -2.71 16 10 C 0.15 3.21 6.52 -3.71 -0.02 3.19 16 11 N -0.59 -14.84 2.99 -172.31 -0.52 -15.36 16 12 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 13 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 14 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 15 N -0.90 -26.07 11.19 55.49 0.62 -25.44 16 16 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C 0.18 4.11 5.30 -3.70 -0.02 4.09 16 21 C -0.15 -2.66 5.55 -26.61 -0.15 -2.80 16 22 C 0.14 1.07 3.09 -27.88 -0.09 0.98 16 23 H 0.12 0.79 8.00 -51.93 -0.42 0.37 16 24 O -0.55 -4.14 12.51 -35.23 -0.44 -4.59 16 25 C -0.11 -0.96 4.88 -104.62 -0.51 -1.47 16 26 C -0.11 -0.85 8.32 -39.58 -0.33 -1.18 16 27 C -0.11 -0.95 10.05 -39.58 -0.40 -1.35 16 28 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 29 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 30 C -0.11 -0.90 9.67 -39.58 -0.38 -1.28 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.56 7.68 -51.93 -0.40 0.16 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.38 2.73 5.48 -40.82 -0.22 2.51 16 35 H 0.39 4.23 8.62 -40.82 -0.35 3.88 16 36 H 0.08 1.62 7.58 -51.93 -0.39 1.22 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 1.18 7.93 -51.92 -0.41 0.77 16 41 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.37 1.89 6.11 45.56 0.28 2.17 16 47 H 0.11 0.66 5.50 -52.49 -0.29 0.37 16 48 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 49 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 50 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 51 H 0.12 0.78 8.04 -52.49 -0.42 0.36 16 LS Contribution 402.90 15.07 6.07 6.07 Total: -1.00 -33.50 402.90 -11.08 -44.58 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -7.54 Total: 7.50 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -3.79 Total: -0.08 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: -0.44 Total: -58.96 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.36 Total: -15.60 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.50 -11.08 -44.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812035031.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.839 kcal (2) G-P(sol) polarization free energy of solvation -33.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds