Wall clock time and date at job start Wed Apr 1 2020 04:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47536 * 2 1 4 4 N 1.46505 * 109.46964 * 239.99415 * 2 1 3 5 5 C 1.34778 * 119.99656 * 85.00645 * 4 2 1 6 6 O 1.21582 * 119.99895 * 359.97438 * 5 4 2 7 7 N 1.34776 * 119.99525 * 179.97438 * 5 4 2 8 8 C 1.46503 * 119.99566 * 179.97438 * 7 5 4 9 9 C 1.53037 * 109.46209 * 275.02590 * 8 7 5 10 10 C 1.53186 * 109.31560 * 178.60093 * 9 8 7 11 11 N 1.46928 * 108.76466 * 54.65940 * 10 9 8 12 12 C 1.36931 * 120.63469 * 126.36324 * 11 10 9 13 13 H 1.07997 * 119.99984 * 331.85359 * 12 11 10 14 14 C 1.38808 * 120.00100 * 151.85814 * 12 11 10 15 15 N 1.31619 * 120.00404 * 343.07030 * 14 12 11 16 16 Si 1.86806 * 120.00124 * 163.07339 * 14 12 11 17 17 H 1.48492 * 109.47283 * 59.99558 * 16 14 12 18 18 H 1.48495 * 109.47053 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46848 * 299.99757 * 16 14 12 20 20 C 1.46932 * 118.73603 * 306.38123 * 11 10 9 21 21 C 1.53035 * 109.45847 * 154.97117 * 8 7 5 22 22 C 1.53003 * 109.46920 * 119.99725 * 2 1 3 23 23 H 1.08995 * 109.47092 * 300.00111 * 22 2 1 24 24 O 1.42910 * 109.47282 * 59.99927 * 22 2 1 25 25 C 1.50700 * 109.47039 * 179.97438 * 22 2 1 26 26 C 1.38235 * 120.00103 * 279.72434 * 25 22 2 27 27 C 1.38234 * 120.00222 * 179.78683 * 26 25 22 28 28 C 1.38240 * 119.99927 * 0.44773 * 27 26 25 29 29 C 1.38242 * 119.99825 * 359.80739 * 28 27 26 30 30 C 1.38236 * 119.99844 * 359.97438 * 29 28 27 31 31 H 1.08996 * 109.47125 * 60.00377 * 1 2 3 32 32 H 1.08998 * 109.47504 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47287 * 300.00711 * 1 2 3 34 34 H 0.97004 * 119.99753 * 264.99844 * 4 2 1 35 35 H 0.97001 * 120.00445 * 359.97438 * 7 5 4 36 36 H 1.09001 * 109.45864 * 34.99910 * 8 7 5 37 37 H 1.09003 * 109.49868 * 298.57428 * 9 8 7 38 38 H 1.09010 * 109.49665 * 58.65903 * 9 8 7 39 39 H 1.08998 * 109.60002 * 294.86982 * 10 9 8 40 40 H 1.09007 * 109.70446 * 174.50249 * 10 9 8 41 41 H 0.96996 * 120.00303 * 180.02562 * 15 14 12 42 42 H 1.09001 * 109.58821 * 293.82654 * 20 11 10 43 43 H 1.09001 * 109.70612 * 173.46557 * 20 11 10 44 44 H 1.09002 * 109.50023 * 301.33855 * 21 8 7 45 45 H 1.09003 * 109.49858 * 61.43735 * 21 8 7 46 46 H 0.96701 * 113.99711 * 59.99866 * 24 22 2 47 47 H 1.07999 * 120.00141 * 0.02562 * 26 25 22 48 48 H 1.08003 * 120.00433 * 180.27523 * 27 26 25 49 49 H 1.07990 * 120.00320 * 179.83571 * 28 27 26 50 50 H 1.07999 * 120.00162 * 180.02562 * 29 28 27 51 51 H 1.08000 * 120.00223 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6908 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8576 1.1612 -2.4118 7 7 2.5968 -0.6538 -3.4574 8 6 2.7363 0.0769 -4.7195 9 6 1.3933 0.0883 -5.4532 10 6 1.5340 0.8828 -6.7553 11 7 2.6430 0.3178 -7.5362 12 6 2.4546 -0.0706 -8.8357 13 1 1.4798 -0.3986 -9.1653 14 6 3.5164 -0.0429 -9.7293 15 7 4.5975 0.6521 -9.4455 16 14 3.4111 -0.9921 -11.3348 17 1 2.2601 -0.4939 -12.1298 18 1 4.6657 -0.8011 -12.1059 19 1 3.2240 -2.4365 -11.0445 20 6 3.9580 0.1771 -6.8960 21 6 3.7899 -0.6091 -5.5920 22 6 2.0399 -0.7212 1.2493 23 1 1.6766 -0.2074 2.1392 24 8 1.5635 -2.0686 1.2494 25 6 3.5469 -0.7218 1.2490 26 6 4.2376 -1.6429 0.4840 27 6 5.6200 -1.6406 0.4803 28 6 6.3117 -0.7231 1.2488 29 6 5.6210 0.1947 2.0180 30 6 4.2386 0.1953 2.0182 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 2.2490 -1.6319 -1.1525 35 1 2.8281 -1.5948 -3.4136 36 1 3.0463 1.1014 -4.5136 37 1 1.0946 -0.9349 -5.6814 38 1 0.6377 0.5559 -4.8217 39 1 1.7439 1.9273 -6.5255 40 1 0.6102 0.8134 -7.3298 41 1 5.3394 0.6717 -10.0701 42 1 4.3655 1.1642 -6.6775 43 1 4.6352 -0.3588 -7.5611 44 1 4.7406 -0.6379 -5.0594 45 1 3.4686 -1.6256 -5.8190 46 1 1.8489 -2.5866 0.4844 47 1 3.6973 -2.3620 -0.1138 48 1 6.1596 -2.3575 -0.1209 49 1 7.3916 -0.7230 1.2480 50 1 6.1613 0.9118 2.6181 51 1 3.6989 0.9120 2.6194 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812035031.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:20 Heat of formation + Delta-G solvation = -57.245338 kcal Electronic energy + Delta-G solvation = -31208.494299 eV Core-core repulsion = 27107.165175 eV Total energy + Delta-G solvation = -4101.329124 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.58911 -40.49606 -39.16449 -38.24668 -36.03673 -35.41937 -33.98254 -32.67816 -31.92443 -31.76742 -31.49750 -30.52745 -27.10875 -26.85391 -24.27675 -23.84237 -23.50093 -22.96583 -22.02331 -21.54487 -21.03132 -19.68825 -18.79309 -18.46543 -17.77510 -16.92445 -16.76105 -16.49480 -16.31092 -16.22958 -15.78064 -15.49722 -15.34615 -15.13070 -14.96439 -14.74691 -14.48139 -14.45206 -14.15503 -14.05327 -14.01645 -13.39855 -13.21824 -13.15758 -13.00116 -12.89295 -12.57193 -12.53866 -12.48751 -12.23970 -12.04313 -12.02933 -11.87886 -11.84304 -11.55969 -11.38263 -11.22844 -11.09866 -10.54800 -10.30978 -9.85300 -9.74244 -9.64586 -8.70597 -7.87375 -5.33236 0.38513 0.49251 1.49330 1.50818 1.58227 1.66552 2.21430 2.52513 2.81148 3.18857 3.29777 3.43927 3.51966 3.67103 3.80944 3.90723 3.92578 4.07451 4.11078 4.25289 4.30912 4.35450 4.39237 4.46718 4.48755 4.61613 4.65646 4.76029 4.77342 4.82203 4.85809 4.96047 5.04491 5.06773 5.07613 5.12621 5.16555 5.29959 5.32195 5.46734 5.49508 5.53365 5.60926 5.62061 5.62698 5.64858 5.70443 6.00700 6.08663 6.39264 6.59037 7.12276 7.14809 7.64103 7.84224 8.37484 9.19657 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016319 B = 0.002365 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.367331 B =11835.477830 C =12807.733842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.138 3.862 3 H 0.075 0.925 4 N -0.725 5.725 5 C 0.704 3.296 6 O -0.633 6.633 7 N -0.726 5.726 8 C 0.183 3.817 9 C -0.122 4.122 10 C 0.145 3.855 11 N -0.608 5.608 12 C -0.265 4.265 13 H 0.067 0.933 14 C -0.049 4.049 15 N -0.936 5.936 16 Si 0.970 3.030 17 H -0.278 1.278 18 H -0.294 1.294 19 H -0.275 1.275 20 C 0.180 3.820 21 C -0.127 4.127 22 C 0.156 3.844 23 H 0.134 0.866 24 O -0.552 6.552 25 C -0.127 4.127 26 C -0.116 4.116 27 C -0.129 4.129 28 C -0.133 4.133 29 C -0.130 4.130 30 C -0.123 4.123 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.402 0.598 35 H 0.409 0.591 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.005 0.995 40 H 0.057 0.943 41 H 0.251 0.749 42 H -0.008 1.008 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.380 0.620 47 H 0.134 0.866 48 H 0.137 0.863 49 H 0.134 0.866 50 H 0.137 0.863 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.169 -8.180 26.597 27.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.032 3.968 3 H 0.094 0.906 4 N -0.383 5.383 5 C 0.404 3.596 6 O -0.514 6.514 7 N -0.380 5.380 8 C 0.078 3.922 9 C -0.162 4.162 10 C 0.019 3.981 11 N -0.332 5.332 12 C -0.395 4.395 13 H 0.085 0.915 14 C -0.245 4.245 15 N -0.582 5.582 16 Si 0.797 3.203 17 H -0.204 1.204 18 H -0.221 1.221 19 H -0.201 1.201 20 C 0.053 3.947 21 C -0.166 4.166 22 C 0.096 3.904 23 H 0.151 0.849 24 O -0.358 6.358 25 C -0.127 4.127 26 C -0.134 4.134 27 C -0.147 4.147 28 C -0.150 4.150 29 C -0.148 4.148 30 C -0.141 4.141 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.240 0.760 35 H 0.245 0.755 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.023 0.977 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.010 0.990 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.230 0.770 47 H 0.152 0.848 48 H 0.155 0.845 49 H 0.152 0.848 50 H 0.155 0.845 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.578 -6.902 27.014 27.926 hybrid contribution 0.784 -0.758 -1.712 2.030 sum -0.794 -7.660 25.302 26.448 Atomic orbital electron populations 1.22058 0.94092 1.03002 1.02096 1.21470 0.94822 0.97139 0.83356 0.90649 1.44941 1.71560 1.13695 1.08084 1.16073 0.77910 0.84647 0.80952 1.90901 1.58678 1.16571 1.85271 1.45099 1.70467 1.14216 1.08255 1.20444 0.95185 0.95068 0.81535 1.22168 0.96997 1.00867 0.96214 1.20960 0.91436 0.93916 0.91831 1.44339 1.07018 1.72108 1.09734 1.19487 0.96798 1.36579 0.86655 0.91502 1.25823 0.97725 0.99991 1.00914 1.70179 1.07708 1.42235 1.38030 0.85316 0.76562 0.78993 0.79401 1.20351 1.22059 1.20063 1.20553 0.87347 0.95500 0.91272 1.22246 0.98029 1.00098 0.96250 1.21109 0.88069 0.83579 0.97614 0.84864 1.86664 1.76423 1.22730 1.50020 1.20606 0.96495 0.97344 0.98280 1.21056 0.94656 0.98877 0.98790 1.21425 0.94598 0.99404 0.99274 1.21497 1.00995 0.95696 0.96858 1.21440 0.94551 0.99228 0.99594 1.21276 0.94811 0.98759 0.99212 0.94383 0.91003 0.90089 0.76021 0.75532 0.92945 0.91501 0.92493 0.97718 0.92474 0.94000 0.98964 0.91815 0.90635 0.91010 0.77002 0.84808 0.84549 0.84797 0.84522 0.84454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.34 71.98 0.67 -1.95 16 2 C 0.14 2.37 2.40 44.99 0.11 2.48 16 3 H 0.08 1.70 7.58 -2.39 -0.02 1.68 16 4 N -0.72 -12.90 4.19 -457.81 -1.92 -14.81 16 5 C 0.70 19.42 8.49 179.05 1.52 20.94 16 6 O -0.63 -23.90 15.67 -3.97 -0.06 -23.96 16 7 N -0.73 -18.53 5.08 -457.69 -2.33 -20.86 16 8 C 0.18 6.24 2.42 45.01 0.11 6.35 16 9 C -0.12 -4.41 5.65 30.67 0.17 -4.24 16 10 C 0.14 6.37 6.52 86.36 0.56 6.93 16 11 N -0.61 -30.87 2.99 -699.08 -2.09 -32.96 16 12 C -0.27 -14.58 9.58 84.03 0.81 -13.78 16 13 H 0.07 3.58 7.88 -2.91 -0.02 3.55 16 14 C -0.05 -2.73 4.92 84.86 0.42 -2.31 16 15 N -0.94 -55.20 11.19 21.65 0.24 -54.96 16 16 Si 0.97 44.38 29.59 68.60 2.03 46.41 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 18 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 C 0.18 8.59 5.30 86.36 0.46 9.05 16 21 C -0.13 -4.46 5.55 30.67 0.17 -4.29 16 22 C 0.16 1.99 3.09 29.85 0.09 2.08 16 23 H 0.13 1.40 8.00 -2.39 -0.02 1.38 16 24 O -0.55 -6.66 12.51 -148.98 -1.86 -8.53 16 25 C -0.13 -1.88 4.88 -19.87 -0.10 -1.98 16 26 C -0.12 -1.61 8.32 22.27 0.19 -1.42 16 27 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 28 C -0.13 -2.03 10.05 22.27 0.22 -1.80 16 29 C -0.13 -1.97 10.05 22.27 0.22 -1.75 16 30 C -0.12 -1.86 9.67 22.27 0.22 -1.64 16 31 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 1.10 7.68 -2.39 -0.02 1.08 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.40 4.43 5.48 -92.71 -0.51 3.92 16 35 H 0.41 7.47 8.62 -92.71 -0.80 6.67 16 36 H 0.05 2.13 7.58 -2.39 -0.02 2.11 16 37 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 39 H 0.00 0.22 8.14 -2.39 -0.02 0.21 16 40 H 0.06 2.44 7.93 -2.38 -0.02 2.42 16 41 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 42 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 43 H 0.06 3.40 6.06 -2.39 -0.01 3.38 16 44 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 46 H 0.38 2.56 6.11 -74.06 -0.45 2.11 16 47 H 0.13 1.12 5.50 -2.91 -0.02 1.10 16 48 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 49 H 0.13 1.59 8.06 -2.92 -0.02 1.56 16 50 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 51 H 0.14 1.55 8.04 -2.91 -0.02 1.52 16 Total: -1.00 -74.05 402.90 -0.73 -74.78 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: -0.81 Total: 23.93 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 6.06 Total: 10.96 kcal Atomic # 7 Polarization: -117.50 SS G_CDS: -6.09 Total: -123.60 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -1.93 Total: -32.49 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -74.05 -0.73 -74.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812035031.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.537 kcal (2) G-P(sol) polarization free energy of solvation -74.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds