Wall clock time and date at job start Wed Apr 1 2020 04:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47169 * 2 1 4 4 N 1.46896 * 109.47319 * 239.99491 * 2 1 3 5 5 C 1.53002 * 109.47062 * 119.99597 * 2 1 3 6 6 H 1.08994 * 109.70286 * 307.04986 * 5 2 1 7 7 C 1.53195 * 109.58692 * 67.40561 * 5 2 1 8 8 C 1.53038 * 109.31516 * 174.42076 * 7 5 2 9 9 C 1.53035 * 109.53915 * 298.63527 * 8 7 5 10 10 C 1.53198 * 109.31365 * 61.36309 * 9 8 7 11 11 N 1.46922 * 109.58938 * 186.69363 * 5 2 1 12 12 C 1.34780 * 120.62724 * 6.58347 * 11 5 2 13 13 O 1.21586 * 120.00093 * 356.20898 * 12 11 5 14 14 N 1.34779 * 119.99854 * 176.21406 * 12 11 5 15 15 C 1.46501 * 120.00227 * 184.96477 * 14 12 11 16 16 C 1.50695 * 109.47466 * 179.97438 * 15 14 12 17 17 C 1.38307 * 119.93214 * 269.73309 * 16 15 14 18 18 C 1.38099 * 120.06854 * 179.72533 * 17 16 15 19 19 C 1.38877 * 119.92809 * 0.56330 * 18 17 16 20 20 O 1.35754 * 120.06644 * 179.68453 * 19 18 17 21 21 C 1.34833 * 116.99915 * 185.90725 * 20 19 18 22 22 H 1.08006 * 119.99846 * 354.85371 * 21 20 19 23 23 C 1.38657 * 120.00303 * 174.85962 * 21 20 19 24 24 N 1.31552 * 119.99933 * 179.97438 * 23 21 20 25 25 Si 1.86806 * 119.99447 * 359.97438 * 23 21 20 26 26 H 1.48493 * 109.47063 * 90.00582 * 25 23 21 27 27 H 1.48505 * 109.46841 * 210.00412 * 25 23 21 28 28 H 1.48495 * 109.47161 * 330.00041 * 25 23 21 29 29 C 1.38878 * 119.86352 * 359.71015 * 19 18 17 30 30 C 1.38101 * 119.93195 * 359.97438 * 29 19 18 31 31 H 1.08999 * 109.47228 * 304.45890 * 1 2 3 32 32 H 1.08997 * 109.46659 * 64.45885 * 1 2 3 33 33 H 1.08993 * 109.47177 * 184.45743 * 1 2 3 34 34 H 1.00901 * 111.00149 * 195.26688 * 4 2 1 35 35 H 1.00902 * 111.00034 * 319.22093 * 4 2 1 36 36 H 1.08998 * 109.49767 * 54.46855 * 7 5 2 37 37 H 1.09004 * 109.49329 * 294.37367 * 7 5 2 38 38 H 1.08995 * 109.46366 * 178.60942 * 8 7 5 39 39 H 1.09005 * 109.45840 * 58.65753 * 8 7 5 40 40 H 1.09007 * 109.49890 * 181.31569 * 9 8 7 41 41 H 1.08998 * 109.50014 * 301.38247 * 9 8 7 42 42 H 1.08999 * 109.58588 * 65.15353 * 10 9 8 43 43 H 1.09000 * 109.58407 * 185.57783 * 10 9 8 44 44 H 0.97008 * 119.99982 * 4.96551 * 14 12 11 45 45 H 1.08994 * 109.47093 * 300.00384 * 15 14 12 46 46 H 1.09004 * 109.46595 * 59.99907 * 15 14 12 47 47 H 1.07999 * 119.96450 * 359.97438 * 17 16 15 48 48 H 1.08000 * 120.03585 * 180.26914 * 18 17 16 49 49 H 0.97007 * 119.99182 * 179.97438 * 24 23 21 50 50 H 1.08005 * 120.03245 * 179.97438 * 29 19 18 51 51 H 1.07997 * 119.96214 * 180.02562 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0400 -0.7212 1.2493 6 1 1.5796 -0.2881 2.1373 7 6 1.6884 -2.2097 1.1626 8 6 2.3203 -2.9488 2.3442 9 6 3.8429 -2.8077 2.2811 10 6 4.2190 -1.3260 2.3805 11 7 3.5003 -0.5845 1.3353 12 6 4.1681 0.2057 0.4715 13 8 3.5715 0.7593 -0.4317 14 7 5.4972 0.3820 0.6088 15 6 6.2049 1.3246 -0.2612 16 6 7.6691 1.3351 0.0952 17 6 8.1418 2.2226 1.0449 18 6 9.4820 2.2308 1.3778 19 6 10.3574 1.3547 0.7494 20 8 11.6765 1.3648 1.0699 21 6 12.4903 0.5773 0.3381 22 1 12.0741 -0.0862 -0.4056 23 6 13.8614 0.6191 0.5403 24 7 14.6552 -0.1497 -0.1734 25 14 14.5812 1.7671 1.8262 26 1 14.6607 1.0617 3.1305 27 1 15.9423 2.1882 1.4074 28 1 13.7129 2.9640 1.9627 29 6 9.8806 0.4687 -0.2078 30 6 8.5381 0.4609 -0.5316 31 1 -0.3633 0.5815 0.8473 32 1 -0.3632 0.4431 -0.9272 33 1 -0.3633 -1.0245 0.0799 34 1 2.9970 -0.9264 -1.1082 35 1 1.4677 -1.5148 -1.3928 36 1 2.0727 -2.6205 0.2289 37 1 0.6055 -2.3301 1.1951 38 1 2.0512 -4.0040 2.2985 39 1 1.9544 -2.5212 3.2777 40 1 4.2936 -3.3539 3.1098 41 1 4.2070 -3.2134 1.3372 42 1 3.9362 -0.9423 3.3608 43 1 5.2934 -1.2113 2.2369 44 1 5.9853 -0.1152 1.2838 45 1 6.0858 1.0192 -1.3007 46 1 5.7913 2.3241 -0.1265 47 1 7.4613 2.9071 1.5295 48 1 9.8498 2.9210 2.1226 49 1 15.6145 -0.1201 -0.0321 50 1 10.5591 -0.2135 -0.6985 51 1 8.1668 -0.2282 -1.2757 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841783425.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:28 Heat of formation + Delta-G solvation = 4.789212 kcal Electronic energy + Delta-G solvation = -30893.467659 eV Core-core repulsion = 26794.828554 eV Total energy + Delta-G solvation = -4098.639104 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.17891 -39.36135 -38.06267 -36.98891 -36.11049 -34.08549 -33.10145 -32.46101 -30.50391 -30.39173 -29.90301 -28.85008 -26.35836 -25.33399 -24.46464 -24.02865 -22.19639 -21.46539 -21.02869 -20.44354 -19.69512 -18.03536 -17.90652 -17.33858 -16.45324 -16.22060 -15.69002 -15.22455 -15.02338 -14.97775 -14.80865 -14.49159 -14.25574 -14.19964 -13.93740 -13.81613 -13.78708 -13.45372 -13.19756 -13.03838 -12.79760 -12.68788 -12.28084 -12.20668 -12.06652 -11.83868 -11.58868 -11.50648 -11.39742 -11.34084 -11.08097 -10.97454 -10.92073 -10.85544 -10.76363 -10.23043 -9.50913 -9.46153 -8.97906 -8.95564 -8.63829 -8.39105 -8.30935 -7.49308 -6.51093 -4.18158 1.89932 2.01388 2.61572 3.11241 3.16419 3.19138 3.33420 3.81317 4.15399 4.33325 4.35454 4.43998 4.44932 4.61918 4.72598 4.79937 4.87683 4.89559 5.01703 5.03893 5.11251 5.18743 5.25905 5.33688 5.36783 5.38413 5.48290 5.49558 5.55882 5.60348 5.64971 5.67733 5.74193 5.86987 5.90747 5.96062 6.01799 6.17416 6.24536 6.41796 6.44659 6.63520 6.66724 6.78445 6.92706 7.11973 7.18175 7.40668 7.48725 7.67985 7.69320 7.90262 7.93285 8.58634 8.83429 9.44033 10.56040 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021069 B = 0.002055 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.633619 B =13620.245808 C =14109.954769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.094 3.906 3 H 0.119 0.881 4 N -0.820 5.820 5 C 0.128 3.872 6 H 0.070 0.930 7 C -0.136 4.136 8 C -0.118 4.118 9 C -0.136 4.136 10 C 0.111 3.889 11 N -0.630 5.630 12 C 0.693 3.307 13 O -0.561 6.561 14 N -0.739 5.739 15 C 0.196 3.804 16 C -0.205 4.205 17 C -0.056 4.056 18 C -0.195 4.195 19 C 0.166 3.834 20 O -0.213 6.213 21 C -0.391 4.391 22 H 0.108 0.892 23 C 0.064 3.936 24 N -0.875 5.875 25 Si 0.906 3.094 26 H -0.273 1.273 27 H -0.281 1.281 28 H -0.259 1.259 29 C -0.224 4.224 30 C -0.052 4.052 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.345 0.655 35 H 0.312 0.688 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.394 0.606 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.114 0.886 48 H 0.118 0.882 49 H 0.281 0.719 50 H 0.134 0.866 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.104 -4.097 5.993 26.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.018 4.018 3 H 0.136 0.864 4 N -0.355 5.355 5 C 0.022 3.978 6 H 0.088 0.912 7 C -0.175 4.175 8 C -0.155 4.155 9 C -0.174 4.174 10 C -0.013 4.013 11 N -0.368 5.368 12 C 0.395 3.605 13 O -0.439 6.439 14 N -0.396 5.396 15 C 0.073 3.927 16 C -0.207 4.207 17 C -0.075 4.075 18 C -0.215 4.215 19 C 0.113 3.887 20 O -0.118 6.118 21 C -0.467 4.467 22 H 0.125 0.875 23 C -0.140 4.140 24 N -0.512 5.512 25 Si 0.731 3.269 26 H -0.198 1.198 27 H -0.207 1.207 28 H -0.183 1.183 29 C -0.243 4.243 30 C -0.070 4.070 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.164 0.836 35 H 0.124 0.876 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.230 0.770 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.132 0.868 48 H 0.136 0.864 49 H 0.091 0.909 50 H 0.152 0.848 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -25.286 -2.917 5.045 25.949 hybrid contribution 1.053 -0.944 1.550 2.099 sum -24.233 -3.861 6.595 25.409 Atomic orbital electron populations 1.22053 0.95857 1.01289 1.02257 1.22001 0.92616 1.01433 0.85738 0.86369 1.59083 1.08023 1.29878 1.38539 1.22028 0.78866 0.95716 1.01170 0.91188 1.22060 1.00906 0.95313 0.99189 1.21486 0.95151 1.00444 0.98451 1.21922 0.96572 0.96002 1.02927 1.21632 0.96682 0.91659 0.91292 1.47336 1.06958 1.48832 1.33704 1.16175 0.82014 0.80127 0.82197 1.91012 1.65548 1.53282 1.34075 1.45812 1.06303 1.46937 1.40569 1.19836 0.87556 0.91983 0.93307 1.19310 0.94022 1.03091 1.04237 1.20540 0.94141 0.97064 0.95737 1.20212 0.92723 1.02874 1.05662 1.19182 0.84489 0.92747 0.92240 1.83573 1.13860 1.60605 1.53716 1.20787 0.87879 1.19252 1.18760 0.87502 1.24493 0.94701 0.97146 0.97632 1.69644 1.04932 1.37705 1.38947 0.86170 0.78294 0.81538 0.80862 1.19830 1.20703 1.18309 1.21283 0.96031 1.03861 1.03166 1.20707 0.92659 0.96396 0.97277 0.92523 0.91657 0.93279 0.83572 0.87608 0.91632 0.90692 0.91708 0.91795 0.90565 0.91417 0.91374 0.90125 0.76955 0.91440 0.91748 0.86821 0.86408 0.90907 0.84825 0.87102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.17 37.16 0.34 -0.93 16 2 C 0.09 0.97 2.44 -67.71 -0.17 0.80 16 3 H 0.12 1.62 5.84 -52.62 -0.31 1.31 16 4 N -0.82 -9.39 7.90 -4.67 -0.04 -9.42 16 5 C 0.13 1.10 2.67 -67.60 -0.18 0.92 16 6 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 7 C -0.14 -0.93 4.75 -26.61 -0.13 -1.06 16 8 C -0.12 -0.71 5.88 -26.69 -0.16 -0.86 16 9 C -0.14 -0.88 6.08 -26.61 -0.16 -1.04 16 10 C 0.11 0.83 6.40 -3.71 -0.02 0.80 16 11 N -0.63 -5.96 2.88 -170.91 -0.49 -6.46 16 12 C 0.69 8.47 7.25 -86.91 -0.63 7.84 16 13 O -0.56 -8.35 10.20 5.29 0.05 -8.29 16 14 N -0.74 -8.68 5.46 -66.42 -0.36 -9.04 16 15 C 0.20 2.59 5.80 -5.20 -0.03 2.56 16 16 C -0.21 -3.09 5.25 -104.58 -0.55 -3.63 16 17 C -0.06 -0.87 9.69 -39.61 -0.38 -1.25 16 18 C -0.20 -3.60 9.99 -39.40 -0.39 -3.99 16 19 C 0.17 3.62 6.65 -39.11 -0.26 3.36 16 20 O -0.21 -5.39 8.59 0.03 0.00 -5.39 16 21 C -0.39 -10.64 9.95 30.89 0.31 -10.33 16 22 H 0.11 2.96 5.44 -52.48 -0.29 2.68 16 23 C 0.06 1.75 5.49 -17.52 -0.10 1.65 16 24 N -0.88 -24.61 13.96 55.48 0.77 -23.84 16 25 Si 0.91 21.02 28.62 -169.99 -4.86 16.15 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16 29 C -0.22 -4.52 9.17 -39.39 -0.36 -4.88 16 30 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.33 6.60 -51.93 -0.34 -0.01 16 34 H 0.35 4.44 6.04 -39.29 -0.24 4.20 16 35 H 0.31 3.02 7.75 -39.29 -0.30 2.71 16 36 H 0.07 0.51 6.75 -51.93 -0.35 0.16 16 37 H 0.07 0.45 6.83 -51.93 -0.35 0.09 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.60 5.62 -51.93 -0.29 0.31 16 44 H 0.39 4.21 5.94 -40.82 -0.24 3.97 16 45 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 46 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 47 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 48 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 49 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 50 H 0.13 2.87 5.64 -52.48 -0.30 2.57 16 51 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 391.48 15.07 5.90 5.90 Total: -1.00 -29.03 391.48 -9.92 -38.95 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -7.64 Total: 12.72 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -3.25 Total: -11.29 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: -0.12 Total: -48.76 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.05 Total: -13.68 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.86 Total: 16.15 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.03 -9.92 -38.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841783425.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.741 kcal (2) G-P(sol) polarization free energy of solvation -29.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds