Wall clock time and date at job start Wed Apr 1 2020 04:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47169 * 2 1 4 4 N 1.46896 * 109.47319 * 239.99491 * 2 1 3 5 5 C 1.53002 * 109.47062 * 119.99597 * 2 1 3 6 6 H 1.08994 * 109.70286 * 307.04986 * 5 2 1 7 7 C 1.53195 * 109.58692 * 67.40561 * 5 2 1 8 8 C 1.53038 * 109.31516 * 174.42076 * 7 5 2 9 9 C 1.53035 * 109.53915 * 298.63527 * 8 7 5 10 10 C 1.53198 * 109.31365 * 61.36309 * 9 8 7 11 11 N 1.46922 * 109.58938 * 186.69363 * 5 2 1 12 12 C 1.34780 * 120.62724 * 6.58347 * 11 5 2 13 13 O 1.21586 * 120.00093 * 356.20898 * 12 11 5 14 14 N 1.34779 * 119.99854 * 176.21406 * 12 11 5 15 15 C 1.46501 * 120.00227 * 184.96477 * 14 12 11 16 16 C 1.50695 * 109.47466 * 179.97438 * 15 14 12 17 17 C 1.38307 * 119.93214 * 269.73309 * 16 15 14 18 18 C 1.38099 * 120.06854 * 179.72533 * 17 16 15 19 19 C 1.38877 * 119.92809 * 0.56330 * 18 17 16 20 20 O 1.35754 * 120.06644 * 179.68453 * 19 18 17 21 21 C 1.34833 * 116.99915 * 185.90725 * 20 19 18 22 22 H 1.08006 * 119.99846 * 354.85371 * 21 20 19 23 23 C 1.38657 * 120.00303 * 174.85962 * 21 20 19 24 24 N 1.31552 * 119.99933 * 179.97438 * 23 21 20 25 25 Si 1.86806 * 119.99447 * 359.97438 * 23 21 20 26 26 H 1.48493 * 109.47063 * 90.00582 * 25 23 21 27 27 H 1.48505 * 109.46841 * 210.00412 * 25 23 21 28 28 H 1.48495 * 109.47161 * 330.00041 * 25 23 21 29 29 C 1.38878 * 119.86352 * 359.71015 * 19 18 17 30 30 C 1.38101 * 119.93195 * 359.97438 * 29 19 18 31 31 H 1.08999 * 109.47228 * 304.45890 * 1 2 3 32 32 H 1.08997 * 109.46659 * 64.45885 * 1 2 3 33 33 H 1.08993 * 109.47177 * 184.45743 * 1 2 3 34 34 H 1.00901 * 111.00149 * 195.26688 * 4 2 1 35 35 H 1.00902 * 111.00034 * 319.22093 * 4 2 1 36 36 H 1.08998 * 109.49767 * 54.46855 * 7 5 2 37 37 H 1.09004 * 109.49329 * 294.37367 * 7 5 2 38 38 H 1.08995 * 109.46366 * 178.60942 * 8 7 5 39 39 H 1.09005 * 109.45840 * 58.65753 * 8 7 5 40 40 H 1.09007 * 109.49890 * 181.31569 * 9 8 7 41 41 H 1.08998 * 109.50014 * 301.38247 * 9 8 7 42 42 H 1.08999 * 109.58588 * 65.15353 * 10 9 8 43 43 H 1.09000 * 109.58407 * 185.57783 * 10 9 8 44 44 H 0.97008 * 119.99982 * 4.96551 * 14 12 11 45 45 H 1.08994 * 109.47093 * 300.00384 * 15 14 12 46 46 H 1.09004 * 109.46595 * 59.99907 * 15 14 12 47 47 H 1.07999 * 119.96450 * 359.97438 * 17 16 15 48 48 H 1.08000 * 120.03585 * 180.26914 * 18 17 16 49 49 H 0.97007 * 119.99182 * 179.97438 * 24 23 21 50 50 H 1.08005 * 120.03245 * 179.97438 * 29 19 18 51 51 H 1.07997 * 119.96214 * 180.02562 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0400 -0.7212 1.2493 6 1 1.5796 -0.2881 2.1373 7 6 1.6884 -2.2097 1.1626 8 6 2.3203 -2.9488 2.3442 9 6 3.8429 -2.8077 2.2811 10 6 4.2190 -1.3260 2.3805 11 7 3.5003 -0.5845 1.3353 12 6 4.1681 0.2057 0.4715 13 8 3.5715 0.7593 -0.4317 14 7 5.4972 0.3820 0.6088 15 6 6.2049 1.3246 -0.2612 16 6 7.6691 1.3351 0.0952 17 6 8.1418 2.2226 1.0449 18 6 9.4820 2.2308 1.3778 19 6 10.3574 1.3547 0.7494 20 8 11.6765 1.3648 1.0699 21 6 12.4903 0.5773 0.3381 22 1 12.0741 -0.0862 -0.4056 23 6 13.8614 0.6191 0.5403 24 7 14.6552 -0.1497 -0.1734 25 14 14.5812 1.7671 1.8262 26 1 14.6607 1.0617 3.1305 27 1 15.9423 2.1882 1.4074 28 1 13.7129 2.9640 1.9627 29 6 9.8806 0.4687 -0.2078 30 6 8.5381 0.4609 -0.5316 31 1 -0.3633 0.5815 0.8473 32 1 -0.3632 0.4431 -0.9272 33 1 -0.3633 -1.0245 0.0799 34 1 2.9970 -0.9264 -1.1082 35 1 1.4677 -1.5148 -1.3928 36 1 2.0727 -2.6205 0.2289 37 1 0.6055 -2.3301 1.1951 38 1 2.0512 -4.0040 2.2985 39 1 1.9544 -2.5212 3.2777 40 1 4.2936 -3.3539 3.1098 41 1 4.2070 -3.2134 1.3372 42 1 3.9362 -0.9423 3.3608 43 1 5.2934 -1.2113 2.2369 44 1 5.9853 -0.1152 1.2838 45 1 6.0858 1.0192 -1.3007 46 1 5.7913 2.3241 -0.1265 47 1 7.4613 2.9071 1.5295 48 1 9.8498 2.9210 2.1226 49 1 15.6145 -0.1201 -0.0321 50 1 10.5591 -0.2135 -0.6985 51 1 8.1668 -0.2282 -1.2757 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841783425.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:27 Heat of formation + Delta-G solvation = -13.661892 kcal Electronic energy + Delta-G solvation = -30894.267758 eV Core-core repulsion = 26794.828554 eV Total energy + Delta-G solvation = -4099.439204 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.01287 -40.94076 -39.10606 -38.31644 -36.95033 -35.17312 -34.43109 -33.79692 -31.87966 -31.37401 -31.03694 -29.57904 -27.84405 -26.58557 -25.43094 -24.83880 -23.71963 -22.25695 -22.12778 -21.46549 -20.54341 -19.83680 -19.15275 -18.67098 -17.33826 -17.13841 -16.72601 -16.48330 -16.31891 -15.81440 -15.79632 -15.62995 -15.52606 -15.47001 -15.07256 -14.91908 -14.80055 -14.43719 -14.36686 -14.19567 -14.02923 -13.97782 -13.61257 -13.27176 -13.09684 -12.85501 -12.59088 -12.56146 -12.47301 -12.31030 -12.18718 -12.15467 -11.94708 -11.90506 -11.60893 -11.54222 -11.30721 -10.92816 -10.39866 -9.95544 -9.83992 -9.41149 -9.19223 -9.07163 -8.51167 -6.24260 0.47282 0.53921 1.32180 1.35656 1.51727 1.73882 2.18431 2.27089 2.70290 2.93997 3.07127 3.21187 3.69765 3.79134 3.84801 3.92009 4.00448 4.01583 4.13403 4.14475 4.23905 4.28958 4.41247 4.45900 4.53860 4.58671 4.60176 4.70530 4.73136 4.82668 4.85653 4.90749 4.95069 4.98730 5.00923 5.12295 5.16735 5.21645 5.29830 5.33073 5.36971 5.41067 5.53156 5.61470 5.70874 5.71783 5.78483 5.87773 5.97336 6.18729 6.55466 6.82910 6.85077 7.00796 7.55773 7.66142 8.60053 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021069 B = 0.002055 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.633619 B =13620.245808 C =14109.954769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.095 3.905 3 H 0.084 0.916 4 N -0.831 5.831 5 C 0.129 3.871 6 H 0.080 0.920 7 C -0.130 4.130 8 C -0.115 4.115 9 C -0.133 4.133 10 C 0.107 3.893 11 N -0.625 5.625 12 C 0.689 3.311 13 O -0.589 6.589 14 N -0.735 5.735 15 C 0.204 3.796 16 C -0.172 4.172 17 C -0.044 4.044 18 C -0.191 4.191 19 C 0.129 3.871 20 O -0.242 6.242 21 C -0.399 4.399 22 H 0.082 0.918 23 C 0.010 3.990 24 N -0.922 5.922 25 Si 0.971 3.029 26 H -0.265 1.265 27 H -0.270 1.270 28 H -0.262 1.262 29 C -0.237 4.237 30 C -0.050 4.050 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.336 0.664 35 H 0.321 0.679 36 H 0.054 0.946 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.054 0.946 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.401 0.599 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.153 0.847 48 H 0.131 0.869 49 H 0.285 0.715 50 H 0.109 0.891 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.229 -3.667 8.006 29.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 H 0.101 0.899 4 N -0.366 5.366 5 C 0.024 3.976 6 H 0.098 0.902 7 C -0.168 4.168 8 C -0.152 4.152 9 C -0.171 4.171 10 C -0.016 4.016 11 N -0.362 5.362 12 C 0.392 3.608 13 O -0.469 6.469 14 N -0.393 5.393 15 C 0.081 3.919 16 C -0.173 4.173 17 C -0.063 4.063 18 C -0.210 4.210 19 C 0.080 3.920 20 O -0.149 6.149 21 C -0.475 4.475 22 H 0.100 0.900 23 C -0.189 4.189 24 N -0.562 5.562 25 Si 0.793 3.207 26 H -0.190 1.190 27 H -0.195 1.195 28 H -0.186 1.186 29 C -0.257 4.257 30 C -0.068 4.068 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.154 0.846 35 H 0.134 0.866 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.238 0.762 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.170 0.830 48 H 0.149 0.851 49 H 0.094 0.906 50 H 0.127 0.873 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -28.481 -2.509 7.082 29.455 hybrid contribution 1.587 -1.075 0.850 2.097 sum -26.894 -3.584 7.932 28.267 Atomic orbital electron populations 1.21982 0.94152 1.02459 1.02178 1.21813 0.93899 0.99617 0.86287 0.89859 1.59031 1.07585 1.30448 1.39553 1.22062 0.78243 0.96819 1.00518 0.90200 1.22014 1.01822 0.93833 0.99158 1.21484 0.94518 1.00919 0.98323 1.21905 0.97170 0.95233 1.02827 1.21814 0.96490 0.92138 0.91161 1.47372 1.07395 1.48090 1.33368 1.16277 0.81905 0.80338 0.82329 1.91026 1.66060 1.54462 1.35363 1.45576 1.06352 1.46852 1.40531 1.19677 0.85977 0.92830 0.93435 1.19565 0.94860 1.00871 1.02044 1.20935 0.93365 0.96984 0.95003 1.20510 0.93315 1.01963 1.05229 1.19728 0.83891 0.94505 0.93907 1.83521 1.15175 1.61543 1.54649 1.20706 0.88666 1.19423 1.18751 0.90007 1.25299 0.94987 0.98818 0.99790 1.69731 1.05357 1.39931 1.41174 0.85212 0.77689 0.79306 0.78506 1.18961 1.19459 1.18575 1.21259 0.97299 1.03720 1.03392 1.20899 0.91264 0.97034 0.97630 0.91344 0.92843 0.91611 0.84631 0.86613 0.92746 0.89284 0.90838 0.90824 0.89169 0.92715 0.89961 0.90203 0.76173 0.91833 0.91023 0.82987 0.85104 0.90554 0.87326 0.85081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.17 71.98 0.66 -1.48 16 2 C 0.10 1.85 2.44 44.92 0.11 1.96 16 3 H 0.08 2.25 5.84 -13.29 -0.08 2.17 16 4 N -0.83 -18.35 7.90 -168.69 -1.33 -19.69 16 5 C 0.13 1.92 2.67 44.98 0.12 2.04 16 6 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 7 C -0.13 -1.43 4.75 30.67 0.15 -1.29 16 8 C -0.11 -1.01 5.88 30.62 0.18 -0.83 16 9 C -0.13 -1.37 6.08 30.67 0.19 -1.18 16 10 C 0.11 1.30 6.40 86.36 0.55 1.85 16 11 N -0.62 -10.49 2.88 -812.89 -2.34 -12.83 16 12 C 0.69 15.64 7.25 179.05 1.30 16.94 16 13 O -0.59 -16.95 10.20 -3.99 -0.04 -16.99 16 14 N -0.74 -15.46 5.46 -482.30 -2.63 -18.09 16 15 C 0.20 4.83 5.80 85.63 0.50 5.33 16 16 C -0.17 -4.71 5.25 -19.84 -0.10 -4.82 16 17 C -0.04 -1.23 9.69 22.25 0.22 -1.01 16 18 C -0.19 -6.71 9.99 22.39 0.22 -6.48 16 19 C 0.13 5.71 6.65 22.58 0.15 5.86 16 20 O -0.24 -12.64 8.59 -22.81 -0.20 -12.83 16 21 C -0.40 -22.90 9.95 67.92 0.68 -22.22 16 22 H 0.08 4.92 5.44 -2.91 -0.02 4.91 16 23 C 0.01 0.55 5.49 84.83 0.47 1.02 16 24 N -0.92 -54.18 13.96 21.61 0.30 -53.88 16 25 Si 0.97 44.36 28.62 68.60 1.96 46.32 16 26 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 27 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 28 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 29 C -0.24 -9.84 9.17 22.39 0.21 -9.64 16 30 C -0.05 -1.60 9.69 22.25 0.22 -1.38 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 0.72 6.60 -2.39 -0.02 0.70 16 34 H 0.34 8.42 6.04 -89.69 -0.54 7.88 16 35 H 0.32 5.85 7.75 -89.69 -0.70 5.15 16 36 H 0.05 0.74 6.75 -2.39 -0.02 0.73 16 37 H 0.09 0.75 6.83 -2.39 -0.02 0.74 16 38 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 40 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 41 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 0.98 5.62 -2.39 -0.01 0.97 16 44 H 0.40 7.46 5.94 -92.70 -0.55 6.91 16 45 H 0.06 1.62 8.08 -2.39 -0.02 1.60 16 46 H 0.07 1.67 8.08 -2.39 -0.02 1.65 16 47 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 48 H 0.13 4.24 8.06 -2.91 -0.02 4.21 16 49 H 0.28 15.36 8.31 -92.70 -0.77 14.59 16 50 H 0.11 5.03 5.64 -2.91 -0.02 5.02 16 51 H 0.13 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -66.92 391.48 0.65 -66.28 By element: Atomic # 1 Polarization: 37.93 SS G_CDS: -0.87 Total: 37.06 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: 5.80 Total: -15.35 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -6.01 Total: -104.49 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.24 Total: -29.83 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.96 Total: 46.32 kcal Total: -66.92 0.65 -66.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841783425.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.617 kcal (2) G-P(sol) polarization free energy of solvation -66.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds