Wall clock time and date at job start Wed Apr 1 2020 04:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47331 * 2 1 4 4 N 1.46499 * 109.47308 * 239.99557 * 2 1 3 5 5 C 1.34775 * 120.00075 * 85.00548 * 4 2 1 6 6 O 1.21588 * 119.99776 * 359.97438 * 5 4 2 7 7 N 1.34772 * 120.00162 * 180.02562 * 5 4 2 8 8 C 1.46496 * 120.00047 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47219 * 179.97438 * 8 7 5 10 10 C 1.38305 * 119.93089 * 269.73003 * 9 8 7 11 11 C 1.38099 * 120.06613 * 179.72547 * 10 9 8 12 12 C 1.38879 * 119.93317 * 0.52373 * 11 10 9 13 13 O 1.35750 * 120.06940 * 179.72855 * 12 11 10 14 14 C 1.34830 * 116.99972 * 174.48644 * 13 12 11 15 15 H 1.08001 * 120.00074 * 5.05879 * 14 13 12 16 16 C 1.38651 * 119.99802 * 185.05868 * 14 13 12 17 17 N 1.31557 * 120.00380 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99691 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46995 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46712 * 119.99978 * 18 16 14 21 21 H 1.48496 * 109.46857 * 239.99381 * 18 16 14 22 22 C 1.38879 * 119.85941 * 359.74872 * 12 11 10 23 23 C 1.38096 * 119.93290 * 359.97438 * 22 12 11 24 24 C 1.53005 * 109.46917 * 119.99627 * 2 1 3 25 25 H 1.08998 * 109.50092 * 60.07682 * 24 2 1 26 26 C 1.53116 * 109.50283 * 300.00393 * 24 2 1 27 27 C 1.53120 * 109.21324 * 182.33460 * 26 24 2 28 28 C 1.53179 * 109.20910 * 57.62085 * 27 26 24 29 29 N 1.46846 * 109.55599 * 300.86120 * 28 27 26 30 30 C 1.46850 * 111.19778 * 61.73961 * 29 28 27 31 31 H 1.09002 * 109.47331 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47304 * 300.00281 * 1 2 3 33 33 H 1.08998 * 109.46612 * 60.00148 * 1 2 3 34 34 H 0.97000 * 119.99677 * 265.00321 * 4 2 1 35 35 H 0.97000 * 120.00158 * 359.97438 * 7 5 4 36 36 H 1.09001 * 109.47264 * 299.99783 * 8 7 5 37 37 H 1.09004 * 109.47165 * 60.00107 * 8 7 5 38 38 H 1.07999 * 119.96604 * 359.97438 * 10 9 8 39 39 H 1.07999 * 120.02862 * 180.26939 * 11 10 9 40 40 H 0.97005 * 120.00031 * 180.02562 * 17 16 14 41 41 H 1.08005 * 120.02926 * 180.02562 * 22 12 11 42 42 H 1.08003 * 119.96532 * 179.97438 * 23 22 12 43 43 H 1.09003 * 109.52285 * 302.26381 * 26 24 2 44 44 H 1.08994 * 109.52551 * 62.39522 * 26 24 2 45 45 H 1.09000 * 109.50230 * 177.62288 * 27 26 24 46 46 H 1.08998 * 109.50314 * 297.73805 * 27 26 24 47 47 H 1.09003 * 109.44472 * 180.83631 * 28 27 26 48 48 H 1.09000 * 109.43632 * 60.88385 * 28 27 26 49 49 H 1.00898 * 110.99703 * 297.64926 * 29 28 27 50 50 H 1.08996 * 109.46215 * 178.24017 * 30 29 28 51 51 H 1.09001 * 109.45048 * 58.27296 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8577 1.1612 -2.4118 7 7 2.5960 -0.6539 -3.4576 8 6 2.7355 0.0767 -4.7196 9 6 3.2522 -0.8554 -5.7852 10 6 4.6143 -0.9881 -5.9847 11 6 5.0910 -1.8456 -6.9565 12 6 4.2007 -2.5670 -7.7413 13 8 4.6661 -3.4066 -8.7011 14 6 3.7553 -4.1610 -9.3486 15 1 2.7022 -4.0226 -9.1530 16 6 4.1707 -5.1145 -10.2656 17 7 5.4534 -5.2828 -10.5042 18 14 2.9086 -6.1591 -11.1631 19 1 1.5440 -5.7767 -10.7197 20 1 3.0343 -5.9387 -12.6263 21 1 3.1447 -7.5928 -10.8565 22 6 2.8334 -2.4273 -7.5423 23 6 2.3631 -1.5724 -6.5651 24 6 2.0400 -0.7212 1.2493 25 1 1.6780 -1.7493 1.2492 26 6 1.5299 0.0001 2.5000 27 6 2.0914 -0.6920 3.7451 28 6 3.6216 -0.6903 3.6757 29 7 4.0594 -1.3924 2.4626 30 6 3.5703 -0.7183 1.2531 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3632 0.5138 -0.8900 34 1 2.2490 -1.6319 -1.1524 35 1 2.8267 -1.5951 -3.4140 36 1 1.7648 0.4707 -5.0206 37 1 3.4368 0.9006 -4.5869 38 1 5.3060 -0.4235 -5.3770 39 1 6.1548 -1.9521 -7.1088 40 1 5.7439 -5.9496 -11.1461 41 1 2.1386 -2.9872 -8.1508 42 1 1.2998 -1.4630 -6.4101 43 1 1.8592 1.0390 2.4811 44 1 0.4408 -0.0365 2.5228 45 1 1.7654 -0.1569 4.6370 46 1 1.7303 -1.7197 3.7842 47 1 4.0252 -1.1954 4.5533 48 1 3.9824 0.3379 3.6505 49 1 3.7701 -2.3589 2.4798 50 1 3.9367 -1.2436 0.3712 51 1 3.9316 0.3100 1.2395 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841783717.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:52 Heat of formation + Delta-G solvation = -47.579601 kcal Electronic energy + Delta-G solvation = -29565.684572 eV Core-core repulsion = 25464.774585 eV Total energy + Delta-G solvation = -4100.909986 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.42411 -39.36694 -38.96473 -36.95567 -35.77992 -34.30372 -32.63775 -32.32874 -31.47182 -30.28420 -29.84383 -29.05578 -25.93383 -25.00497 -24.25778 -23.50152 -22.05669 -21.79018 -20.79051 -20.61801 -20.55981 -18.43687 -18.06610 -17.08089 -16.69804 -16.26821 -15.61373 -15.40235 -15.15356 -14.81673 -14.71572 -14.64104 -14.50235 -14.10771 -13.85834 -13.71275 -13.58203 -13.39926 -13.15188 -13.03834 -12.79809 -12.75952 -12.51342 -12.13608 -12.00843 -11.95023 -11.68815 -11.55038 -11.40757 -11.38282 -11.02363 -10.98412 -10.84570 -10.77601 -10.68041 -10.48757 -10.14549 -9.43130 -9.34114 -8.92579 -8.82476 -8.67600 -8.28795 -7.33563 -6.53914 -4.12786 2.02367 2.12755 2.82497 3.07563 3.08734 3.14304 3.25997 3.84190 3.89403 4.17822 4.19099 4.36253 4.46516 4.54710 4.58219 4.77677 4.92468 5.01130 5.02675 5.08775 5.14266 5.15782 5.17038 5.24573 5.41759 5.42542 5.44934 5.45887 5.52918 5.58272 5.66154 5.66934 5.73403 5.82248 5.85437 5.95226 6.01847 6.11912 6.35273 6.41371 6.57560 6.58344 6.62135 6.80022 6.89520 6.94879 6.99737 7.15685 7.27622 7.34752 7.71174 7.90931 8.05743 8.64640 8.91574 9.59920 10.63665 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017177 B = 0.001698 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.727615 B =16487.233198 C =16813.612285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.170 3.830 3 H 0.088 0.912 4 N -0.745 5.745 5 C 0.702 3.298 6 O -0.597 6.597 7 N -0.738 5.738 8 C 0.198 3.802 9 C -0.214 4.214 10 C -0.053 4.053 11 C -0.196 4.196 12 C 0.161 3.839 13 O -0.174 6.174 14 C -0.393 4.393 15 H 0.094 0.906 16 C 0.040 3.960 17 N -0.859 5.859 18 Si 0.942 3.058 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.237 4.237 23 C -0.050 4.050 24 C -0.131 4.131 25 H 0.074 0.926 26 C -0.113 4.113 27 C -0.157 4.157 28 C 0.054 3.946 29 N -0.685 5.685 30 C 0.063 3.937 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.394 0.606 35 H 0.397 0.603 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.271 0.729 41 H 0.128 0.872 42 H 0.108 0.892 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.061 0.939 47 H 0.074 0.926 48 H 0.073 0.927 49 H 0.340 0.660 50 H 0.078 0.922 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.697 6.773 25.457 27.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.106 0.894 4 N -0.401 5.401 5 C 0.402 3.598 6 O -0.476 6.476 7 N -0.393 5.393 8 C 0.075 3.925 9 C -0.215 4.215 10 C -0.072 4.072 11 C -0.215 4.215 12 C 0.106 3.894 13 O -0.076 6.076 14 C -0.469 4.469 15 H 0.111 0.889 16 C -0.165 4.165 17 N -0.493 5.493 18 Si 0.767 3.233 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.257 4.257 23 C -0.069 4.069 24 C -0.152 4.152 25 H 0.092 0.908 26 C -0.151 4.151 27 C -0.196 4.196 28 C -0.076 4.076 29 N -0.313 5.313 30 C -0.067 4.067 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.227 0.773 35 H 0.231 0.769 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.081 0.919 41 H 0.146 0.854 42 H 0.126 0.874 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.092 0.908 48 H 0.091 0.909 49 H 0.157 0.843 50 H 0.096 0.904 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.933 7.998 25.115 27.254 hybrid contribution -1.523 -1.746 -0.485 2.367 sum -8.456 6.252 24.629 26.780 Atomic orbital electron populations 1.22252 0.95626 1.01961 1.02561 1.20685 0.93637 0.97064 0.82196 0.89407 1.45215 1.72294 1.13535 1.09052 1.16017 0.78338 0.85104 0.80323 1.90903 1.57488 1.14476 1.84706 1.45515 1.70552 1.14054 1.09167 1.19816 1.00367 0.92461 0.79814 1.19229 0.93635 1.05990 1.02660 1.20543 0.94226 0.96289 0.96174 1.20222 0.98947 1.02565 0.99753 1.19441 0.91950 0.90064 0.87958 1.83980 1.36176 1.45839 1.41647 1.21403 0.88774 1.15586 1.21142 0.88872 1.25321 0.97229 0.96934 0.97012 1.70046 1.13927 1.32705 1.32660 0.85631 0.79443 0.79215 0.79056 1.19051 1.20054 1.20080 1.21161 0.95545 1.05388 1.03584 1.20646 0.98080 0.94199 0.93989 1.22188 0.98186 1.00244 0.94564 0.90757 1.21620 1.00748 0.99643 0.93126 1.22289 0.97901 1.01090 0.98367 1.22079 0.92577 0.99999 0.92914 1.60652 1.62562 1.06136 1.01909 1.22081 0.91211 1.00527 0.92891 0.92712 0.91691 0.91834 0.77265 0.76944 0.91852 0.91764 0.86930 0.86381 0.91930 0.85446 0.87427 0.91444 0.91267 0.91262 0.91987 0.90768 0.90862 0.84256 0.90381 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 9.13 37.16 0.34 -1.01 16 2 C 0.17 1.41 2.16 -67.93 -0.15 1.27 16 3 H 0.09 0.92 7.58 -51.93 -0.39 0.53 16 4 N -0.75 -6.83 4.41 -58.67 -0.26 -7.08 16 5 C 0.70 9.13 8.53 -86.92 -0.74 8.39 16 6 O -0.60 -10.10 16.01 5.29 0.08 -10.02 16 7 N -0.74 -9.10 5.55 -66.42 -0.37 -9.47 16 8 C 0.20 2.79 5.80 -5.20 -0.03 2.76 16 9 C -0.21 -3.39 5.25 -104.57 -0.55 -3.94 16 10 C -0.05 -0.89 9.69 -39.61 -0.38 -1.28 16 11 C -0.20 -3.91 9.99 -39.39 -0.39 -4.31 16 12 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 13 O -0.17 -4.80 9.76 0.05 0.00 -4.80 16 14 C -0.39 -10.65 9.49 30.88 0.29 -10.35 16 15 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 17 N -0.86 -24.59 13.67 55.48 0.76 -23.84 16 18 Si 0.94 19.97 29.55 -169.99 -5.02 14.95 16 19 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 22 C -0.24 -4.89 9.17 -39.40 -0.36 -5.25 16 23 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 24 C -0.13 -0.79 1.97 -90.54 -0.18 -0.97 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 C -0.11 -0.62 4.85 -26.61 -0.13 -0.75 16 27 C -0.16 -0.76 6.09 -26.58 -0.16 -0.92 16 28 C 0.05 0.30 6.56 -3.76 -0.02 0.28 16 29 N -0.69 -4.58 6.87 -113.74 -0.78 -5.36 16 30 C 0.06 0.44 5.67 -3.83 -0.02 0.42 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.44 6.49 -51.93 -0.34 0.10 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.39 2.75 8.42 -40.82 -0.34 2.41 16 35 H 0.40 4.29 8.48 -40.82 -0.35 3.95 16 36 H 0.06 0.92 8.09 -51.93 -0.42 0.50 16 37 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 40 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.13 2.65 5.64 -52.48 -0.30 2.36 16 42 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.36 6.57 -51.93 -0.34 0.02 16 45 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.34 1.92 8.86 -39.29 -0.35 1.57 16 50 H 0.08 0.58 7.49 -51.93 -0.39 0.19 16 51 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 409.97 15.07 6.18 6.18 Total: -1.00 -31.54 409.97 -10.75 -42.29 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -8.12 Total: 9.67 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -3.23 Total: -12.51 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: -0.65 Total: -45.75 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: 0.09 Total: -14.82 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.54 -10.75 -42.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841783717.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.290 kcal (2) G-P(sol) polarization free energy of solvation -31.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds