Wall clock time and date at job start Wed Apr 1 2020 04:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47331 * 2 1 4 4 N 1.46499 * 109.47308 * 239.99557 * 2 1 3 5 5 C 1.34775 * 120.00075 * 85.00548 * 4 2 1 6 6 O 1.21588 * 119.99776 * 359.97438 * 5 4 2 7 7 N 1.34772 * 120.00162 * 180.02562 * 5 4 2 8 8 C 1.46496 * 120.00047 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47219 * 179.97438 * 8 7 5 10 10 C 1.38305 * 119.93089 * 269.73003 * 9 8 7 11 11 C 1.38099 * 120.06613 * 179.72547 * 10 9 8 12 12 C 1.38879 * 119.93317 * 0.52373 * 11 10 9 13 13 O 1.35750 * 120.06940 * 179.72855 * 12 11 10 14 14 C 1.34830 * 116.99972 * 174.48644 * 13 12 11 15 15 H 1.08001 * 120.00074 * 5.05879 * 14 13 12 16 16 C 1.38651 * 119.99802 * 185.05868 * 14 13 12 17 17 N 1.31557 * 120.00380 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99691 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46995 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46712 * 119.99978 * 18 16 14 21 21 H 1.48496 * 109.46857 * 239.99381 * 18 16 14 22 22 C 1.38879 * 119.85941 * 359.74872 * 12 11 10 23 23 C 1.38096 * 119.93290 * 359.97438 * 22 12 11 24 24 C 1.53005 * 109.46917 * 119.99627 * 2 1 3 25 25 H 1.08998 * 109.50092 * 60.07682 * 24 2 1 26 26 C 1.53116 * 109.50283 * 300.00393 * 24 2 1 27 27 C 1.53120 * 109.21324 * 182.33460 * 26 24 2 28 28 C 1.53179 * 109.20910 * 57.62085 * 27 26 24 29 29 N 1.46846 * 109.55599 * 300.86120 * 28 27 26 30 30 C 1.46850 * 111.19778 * 61.73961 * 29 28 27 31 31 H 1.09002 * 109.47331 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47304 * 300.00281 * 1 2 3 33 33 H 1.08998 * 109.46612 * 60.00148 * 1 2 3 34 34 H 0.97000 * 119.99677 * 265.00321 * 4 2 1 35 35 H 0.97000 * 120.00158 * 359.97438 * 7 5 4 36 36 H 1.09001 * 109.47264 * 299.99783 * 8 7 5 37 37 H 1.09004 * 109.47165 * 60.00107 * 8 7 5 38 38 H 1.07999 * 119.96604 * 359.97438 * 10 9 8 39 39 H 1.07999 * 120.02862 * 180.26939 * 11 10 9 40 40 H 0.97005 * 120.00031 * 180.02562 * 17 16 14 41 41 H 1.08005 * 120.02926 * 180.02562 * 22 12 11 42 42 H 1.08003 * 119.96532 * 179.97438 * 23 22 12 43 43 H 1.09003 * 109.52285 * 302.26381 * 26 24 2 44 44 H 1.08994 * 109.52551 * 62.39522 * 26 24 2 45 45 H 1.09000 * 109.50230 * 177.62288 * 27 26 24 46 46 H 1.08998 * 109.50314 * 297.73805 * 27 26 24 47 47 H 1.09003 * 109.44472 * 180.83631 * 28 27 26 48 48 H 1.09000 * 109.43632 * 60.88385 * 28 27 26 49 49 H 1.00898 * 110.99703 * 297.64926 * 29 28 27 50 50 H 1.08996 * 109.46215 * 178.24017 * 30 29 28 51 51 H 1.09001 * 109.45048 * 58.27296 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8577 1.1612 -2.4118 7 7 2.5960 -0.6539 -3.4576 8 6 2.7355 0.0767 -4.7196 9 6 3.2522 -0.8554 -5.7852 10 6 4.6143 -0.9881 -5.9847 11 6 5.0910 -1.8456 -6.9565 12 6 4.2007 -2.5670 -7.7413 13 8 4.6661 -3.4066 -8.7011 14 6 3.7553 -4.1610 -9.3486 15 1 2.7022 -4.0226 -9.1530 16 6 4.1707 -5.1145 -10.2656 17 7 5.4534 -5.2828 -10.5042 18 14 2.9086 -6.1591 -11.1631 19 1 1.5440 -5.7767 -10.7197 20 1 3.0343 -5.9387 -12.6263 21 1 3.1447 -7.5928 -10.8565 22 6 2.8334 -2.4273 -7.5423 23 6 2.3631 -1.5724 -6.5651 24 6 2.0400 -0.7212 1.2493 25 1 1.6780 -1.7493 1.2492 26 6 1.5299 0.0001 2.5000 27 6 2.0914 -0.6920 3.7451 28 6 3.6216 -0.6903 3.6757 29 7 4.0594 -1.3924 2.4626 30 6 3.5703 -0.7183 1.2531 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3632 0.5138 -0.8900 34 1 2.2490 -1.6319 -1.1524 35 1 2.8267 -1.5951 -3.4140 36 1 1.7648 0.4707 -5.0206 37 1 3.4368 0.9006 -4.5869 38 1 5.3060 -0.4235 -5.3770 39 1 6.1548 -1.9521 -7.1088 40 1 5.7439 -5.9496 -11.1461 41 1 2.1386 -2.9872 -8.1508 42 1 1.2998 -1.4630 -6.4101 43 1 1.8592 1.0390 2.4811 44 1 0.4408 -0.0365 2.5228 45 1 1.7654 -0.1569 4.6370 46 1 1.7303 -1.7197 3.7842 47 1 4.0252 -1.1954 4.5533 48 1 3.9824 0.3379 3.6505 49 1 3.7701 -2.3589 2.4798 50 1 3.9367 -1.2436 0.3712 51 1 3.9316 0.3100 1.2395 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841783717.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:51 Heat of formation + Delta-G solvation = -69.888952 kcal Electronic energy + Delta-G solvation = -29566.651978 eV Core-core repulsion = 25464.774585 eV Total energy + Delta-G solvation = -4101.877392 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.33347 -40.78256 -39.89117 -38.52626 -36.59675 -35.54105 -34.28686 -33.26892 -32.12762 -31.82294 -31.02903 -29.83358 -27.65377 -26.30507 -25.04884 -24.04003 -23.64017 -22.57663 -22.06212 -21.58751 -21.21311 -19.88553 -19.39958 -18.80738 -17.57933 -16.89525 -16.65461 -16.42062 -16.27741 -16.01694 -15.86897 -15.77169 -15.54395 -15.42449 -15.24942 -14.90710 -14.55219 -14.38951 -14.33177 -14.13420 -13.77496 -13.66769 -13.55998 -13.28768 -13.03956 -13.01835 -12.69427 -12.56989 -12.52260 -12.34955 -12.21736 -12.09326 -12.04458 -11.89970 -11.54561 -11.43915 -11.22107 -11.19605 -10.81290 -10.33182 -9.82028 -9.73604 -9.21839 -9.01450 -8.48376 -6.16540 0.53407 0.58209 1.35953 1.42920 1.53815 1.84969 2.16913 2.22427 2.80701 3.13246 3.34189 3.45079 3.48805 3.65516 3.84904 3.89681 3.91778 4.04183 4.10338 4.18019 4.26937 4.38028 4.47654 4.49558 4.52853 4.57491 4.59205 4.63375 4.73992 4.80424 4.82014 4.93396 5.01408 5.02491 5.05058 5.08250 5.14946 5.16407 5.18552 5.27191 5.32916 5.42067 5.50416 5.54692 5.63301 5.69421 5.76416 6.01696 6.04933 6.09795 6.16952 6.51276 6.96594 7.14481 7.64640 7.75994 8.74621 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017177 B = 0.001698 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.727615 B =16487.233198 C =16813.612285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.171 3.829 3 H 0.064 0.936 4 N -0.729 5.729 5 C 0.701 3.299 6 O -0.636 6.636 7 N -0.732 5.732 8 C 0.205 3.795 9 C -0.180 4.180 10 C -0.043 4.043 11 C -0.204 4.204 12 C 0.123 3.877 13 O -0.229 6.229 14 C -0.413 4.413 15 H 0.104 0.896 16 C -0.022 4.022 17 N -0.919 5.919 18 Si 1.018 2.982 19 H -0.251 1.251 20 H -0.270 1.270 21 H -0.269 1.269 22 C -0.244 4.244 23 C -0.045 4.045 24 C -0.116 4.116 25 H 0.088 0.912 26 C -0.113 4.113 27 C -0.150 4.150 28 C 0.053 3.947 29 N -0.695 5.695 30 C 0.066 3.934 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.036 0.964 34 H 0.408 0.592 35 H 0.407 0.593 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.147 0.853 39 H 0.115 0.885 40 H 0.273 0.727 41 H 0.120 0.880 42 H 0.138 0.862 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.068 0.932 47 H 0.082 0.918 48 H 0.064 0.936 49 H 0.347 0.653 50 H 0.074 0.926 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.816 6.986 28.118 30.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.066 3.934 3 H 0.083 0.917 4 N -0.385 5.385 5 C 0.401 3.599 6 O -0.518 6.518 7 N -0.387 5.387 8 C 0.081 3.919 9 C -0.181 4.181 10 C -0.061 4.061 11 C -0.224 4.224 12 C 0.072 3.928 13 O -0.136 6.136 14 C -0.489 4.489 15 H 0.121 0.879 16 C -0.220 4.220 17 N -0.557 5.557 18 Si 0.837 3.163 19 H -0.174 1.174 20 H -0.195 1.195 21 H -0.194 1.194 22 C -0.263 4.263 23 C -0.063 4.063 24 C -0.137 4.137 25 H 0.106 0.894 26 C -0.151 4.151 27 C -0.189 4.189 28 C -0.077 4.077 29 N -0.323 5.323 30 C -0.063 4.063 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.244 0.756 35 H 0.242 0.758 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.164 0.836 39 H 0.133 0.867 40 H 0.082 0.918 41 H 0.138 0.862 42 H 0.156 0.844 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.100 0.900 48 H 0.082 0.918 49 H 0.166 0.834 50 H 0.093 0.907 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.069 8.211 27.851 30.419 hybrid contribution -0.891 -1.526 -0.973 2.017 sum -9.960 6.685 26.877 29.433 Atomic orbital electron populations 1.22198 0.95145 1.02492 1.02000 1.20729 0.93908 0.96177 0.82632 0.91733 1.45096 1.71172 1.14090 1.08149 1.16110 0.78063 0.84640 0.81052 1.90886 1.59190 1.16364 1.85388 1.45242 1.70560 1.14392 1.08515 1.19684 1.00533 0.91930 0.79742 1.19488 0.93136 1.03934 1.01577 1.20877 0.95282 0.95011 0.94933 1.20450 0.98758 1.02937 1.00225 1.19988 0.93726 0.90577 0.88520 1.83949 1.37271 1.48143 1.44192 1.21870 0.89397 1.16039 1.21554 0.87887 1.26580 0.99482 0.98147 0.97782 1.70186 1.16379 1.34509 1.34585 0.84535 0.77079 0.77136 0.77512 1.17392 1.19495 1.19366 1.21240 0.94435 1.06151 1.04465 1.20931 0.99922 0.92867 0.92611 1.22063 0.97404 1.00639 0.93587 0.89401 1.21631 1.01214 0.99221 0.93079 1.22228 0.97020 1.01467 0.98234 1.22100 0.93330 0.99494 0.92750 1.60632 1.62977 1.06673 1.02030 1.21976 0.91768 0.99512 0.93092 0.91546 0.90163 0.94519 0.75623 0.75769 0.91609 0.91343 0.83571 0.86690 0.91813 0.86217 0.84405 0.92236 0.90485 0.90456 0.91322 0.89977 0.91788 0.83424 0.90741 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.13 71.98 0.66 -1.64 16 2 C 0.17 2.55 2.16 44.99 0.10 2.65 16 3 H 0.06 1.31 7.58 -2.39 -0.02 1.29 16 4 N -0.73 -11.72 4.41 -457.81 -2.02 -13.74 16 5 C 0.70 16.70 8.53 179.06 1.53 18.23 16 6 O -0.64 -20.64 16.01 -3.99 -0.06 -20.71 16 7 N -0.73 -15.77 5.55 -482.31 -2.68 -18.45 16 8 C 0.20 5.05 5.80 85.63 0.50 5.55 16 9 C -0.18 -5.16 5.25 -19.83 -0.10 -5.27 16 10 C -0.04 -1.32 9.69 22.25 0.22 -1.10 16 11 C -0.20 -8.18 9.99 22.39 0.22 -7.96 16 12 C 0.12 5.83 6.65 22.58 0.15 5.98 16 13 O -0.23 -13.40 9.76 -22.74 -0.22 -13.62 16 14 C -0.41 -23.35 9.49 67.92 0.64 -22.71 16 15 H 0.10 5.33 5.20 -2.91 -0.02 5.31 16 16 C -0.02 -1.23 5.49 84.83 0.47 -0.76 16 17 N -0.92 -55.37 13.67 21.61 0.30 -55.07 16 18 Si 1.02 41.85 29.55 68.60 2.03 43.88 16 19 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 20 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 21 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 22 C -0.24 -9.99 9.17 22.39 0.21 -9.78 16 23 C -0.04 -1.43 9.69 22.25 0.22 -1.21 16 24 C -0.12 -1.14 1.97 -10.74 -0.02 -1.16 16 25 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 26 C -0.11 -0.99 4.85 30.67 0.15 -0.84 16 27 C -0.15 -1.08 6.09 30.69 0.19 -0.89 16 28 C 0.05 0.50 6.56 86.37 0.57 1.07 16 29 N -0.69 -8.03 6.87 -513.75 -3.53 -11.56 16 30 C 0.07 0.83 5.67 86.32 0.49 1.32 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 0.90 6.49 -2.39 -0.02 0.88 16 33 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.41 4.47 8.42 -92.71 -0.78 3.69 16 35 H 0.41 7.36 8.48 -92.71 -0.79 6.57 16 36 H 0.07 1.67 8.09 -2.39 -0.02 1.65 16 37 H 0.07 1.72 8.08 -2.38 -0.02 1.70 16 38 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 39 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 40 H 0.27 15.03 8.31 -92.70 -0.77 14.26 16 41 H 0.12 5.03 5.64 -2.91 -0.02 5.02 16 42 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 43 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.08 0.58 6.57 -2.39 -0.02 0.56 16 45 H 0.08 0.46 8.14 -2.39 -0.02 0.45 16 46 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.35 3.11 8.86 -89.70 -0.79 2.32 16 50 H 0.07 0.96 7.49 -2.39 -0.02 0.95 16 51 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -73.24 409.97 -1.42 -74.65 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: -1.39 Total: 33.15 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: 6.17 Total: -18.53 kcal Atomic # 7 Polarization: -90.89 SS G_CDS: -7.93 Total: -98.81 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -0.29 Total: -34.33 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -73.24 -1.42 -74.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841783717.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.766 kcal (2) G-P(sol) polarization free energy of solvation -73.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds