Wall clock time and date at job start Wed Apr 1 2020 04:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46737 * 2 1 4 4 N 1.46501 * 109.47210 * 119.99417 * 2 1 3 5 5 C 1.34776 * 119.99787 * 275.00535 * 4 2 1 6 6 O 1.21590 * 120.00327 * 359.97438 * 5 4 2 7 7 N 1.34784 * 119.99913 * 180.02562 * 5 4 2 8 8 C 1.46494 * 120.00125 * 179.97438 * 7 5 4 9 9 C 1.50695 * 109.47214 * 179.97438 * 8 7 5 10 10 C 1.38304 * 119.93167 * 269.72865 * 9 8 7 11 11 C 1.38101 * 120.06823 * 179.72468 * 10 9 8 12 12 C 1.38873 * 119.93119 * 0.52434 * 11 10 9 13 13 O 1.35750 * 120.06981 * 179.72734 * 12 11 10 14 14 C 1.34827 * 117.00175 * 174.48343 * 13 12 11 15 15 H 1.08003 * 120.00009 * 5.06412 * 14 13 12 16 16 C 1.38658 * 120.00071 * 185.05494 * 14 13 12 17 17 N 1.31555 * 120.00051 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99768 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47149 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46642 * 120.00216 * 18 16 14 21 21 H 1.48496 * 109.47074 * 240.00392 * 18 16 14 22 22 C 1.38873 * 119.86233 * 359.74631 * 12 11 10 23 23 C 1.38099 * 119.93488 * 0.02562 * 22 12 11 24 24 C 1.52996 * 109.47446 * 239.99836 * 2 1 3 25 25 H 1.09002 * 109.53077 * 300.09813 * 24 2 1 26 26 C 1.53120 * 109.50578 * 60.19432 * 24 2 1 27 27 C 1.53114 * 109.16041 * 177.59792 * 26 24 2 28 28 C 1.53035 * 109.27916 * 302.34697 * 27 26 24 29 29 N 1.46825 * 109.52075 * 59.18050 * 28 27 26 30 30 C 1.46851 * 111.20452 * 298.25480 * 29 28 27 31 31 H 1.09002 * 109.47187 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47349 * 300.00466 * 1 2 3 33 33 H 1.09000 * 109.46913 * 60.00245 * 1 2 3 34 34 H 0.97001 * 120.00025 * 94.99997 * 4 2 1 35 35 H 0.96998 * 119.99339 * 359.97438 * 7 5 4 36 36 H 1.08999 * 109.47218 * 299.99903 * 8 7 5 37 37 H 1.09004 * 109.47406 * 59.99914 * 8 7 5 38 38 H 1.08000 * 119.96462 * 359.97438 * 10 9 8 39 39 H 1.08000 * 120.03045 * 180.27162 * 11 10 9 40 40 H 0.96999 * 119.99593 * 179.97438 * 17 16 14 41 41 H 1.08005 * 120.03626 * 180.02562 * 22 12 11 42 42 H 1.07995 * 119.97482 * 179.97438 * 23 22 12 43 43 H 1.09005 * 109.52127 * 297.50127 * 26 24 2 44 44 H 1.08996 * 109.52330 * 57.69256 * 26 24 2 45 45 H 1.09006 * 109.50455 * 62.28985 * 27 26 24 46 46 H 1.09008 * 109.50036 * 182.36383 * 27 26 24 47 47 H 1.09007 * 109.45995 * 179.19790 * 28 27 26 48 48 H 1.09006 * 109.45918 * 299.16001 * 28 27 26 49 49 H 1.00892 * 110.98801 * 174.15928 * 29 28 27 50 50 H 1.08999 * 109.45920 * 301.72922 * 30 29 28 51 51 H 1.08999 * 109.45721 * 181.75929 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1470 -0.0180 2.3571 6 8 1.8582 1.1618 2.4116 7 7 2.5968 -0.6531 3.4576 8 6 2.7371 0.0779 4.7193 9 6 3.2535 -0.8540 5.7851 10 6 2.3642 -1.5655 6.5696 11 6 2.8344 -2.4246 7.5433 12 6 4.2017 -2.5654 7.7415 13 8 4.6669 -3.4049 8.7016 14 6 6.0020 -3.5817 8.7655 15 1 6.6544 -3.0048 8.1268 16 6 6.5375 -4.5041 9.6515 17 7 5.7429 -5.2071 10.4294 18 14 8.3873 -4.7486 9.7406 19 1 9.0536 -3.8432 8.7702 20 1 8.8621 -4.4381 11.1130 21 1 8.7168 -6.1582 9.4098 22 6 5.0921 -1.8452 6.9559 23 6 4.6158 -0.9913 5.9807 24 6 2.0401 -0.7213 -1.2492 25 1 1.6759 -1.7486 -1.2510 26 6 1.5342 0.0027 -2.5000 27 6 2.0979 -0.6895 -3.7439 28 6 3.6266 -0.6909 -3.6722 29 7 4.0603 -1.3954 -2.4592 30 6 3.5704 -0.7217 -1.2499 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 2.2491 -1.6317 1.1528 35 1 2.8275 -1.5942 3.4140 36 1 3.4381 0.9018 4.5858 37 1 1.7666 0.4719 5.0209 38 1 1.3009 -1.4523 6.4179 39 1 2.1394 -2.9833 8.1526 40 1 6.1175 -5.8526 11.0489 41 1 6.1560 -1.9529 7.1074 42 1 5.3076 -0.4307 5.3697 43 1 0.4450 -0.0324 -2.5256 44 1 1.8657 1.0408 -2.4791 45 1 1.7346 -1.7164 -3.7850 46 1 1.7753 -0.1533 -4.6364 47 1 4.0308 -1.1958 -4.5497 48 1 3.9898 0.3365 -3.6451 49 1 5.0643 -1.4928 -2.4374 50 1 3.9339 0.3058 -1.2341 51 1 3.9339 -1.2491 -0.3679 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841783718.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:56 Heat of formation + Delta-G solvation = -46.055730 kcal Electronic energy + Delta-G solvation = -29567.347089 eV Core-core repulsion = 25466.503183 eV Total energy + Delta-G solvation = -4100.843906 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.34360 -39.27860 -38.88743 -36.94537 -35.75061 -34.29194 -32.76353 -32.35426 -31.45870 -30.28254 -29.83552 -29.06479 -25.93054 -25.00805 -24.27294 -23.54354 -22.05583 -21.66736 -20.72336 -20.60462 -20.10440 -18.44678 -18.06800 -17.17823 -16.85795 -16.37506 -15.55798 -15.10917 -14.81085 -14.77363 -14.62802 -14.59686 -14.49425 -14.29038 -13.95212 -13.71006 -13.61635 -13.55103 -13.35780 -13.07679 -12.90496 -12.78874 -12.54571 -12.13230 -11.95806 -11.81822 -11.68429 -11.40395 -11.38176 -11.05197 -10.98048 -10.80879 -10.75954 -10.69505 -10.67720 -10.48533 -10.12524 -9.42916 -9.27482 -8.92410 -8.87538 -8.74700 -8.28666 -7.33412 -6.53793 -4.12589 2.02872 2.12840 2.85072 3.07872 3.08925 3.14468 3.27553 3.73511 3.89586 4.21460 4.36224 4.40339 4.48850 4.58392 4.65386 4.84948 4.99115 5.01289 5.07661 5.16041 5.19198 5.22443 5.24944 5.28833 5.36313 5.45118 5.47238 5.49602 5.51206 5.61197 5.67056 5.75374 5.77528 5.82354 5.93272 5.99132 6.07867 6.12012 6.35327 6.44757 6.58583 6.59696 6.63021 6.80193 6.91210 6.94140 7.00804 7.15964 7.27762 7.34877 7.71300 7.91112 8.07831 8.66378 8.91729 9.60107 10.63820 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014890 B = 0.001795 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.983505 B =15596.604509 C =16881.506420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.167 3.833 3 H 0.086 0.914 4 N -0.745 5.745 5 C 0.702 3.298 6 O -0.598 6.598 7 N -0.738 5.738 8 C 0.198 3.802 9 C -0.213 4.213 10 C -0.054 4.054 11 C -0.196 4.196 12 C 0.161 3.839 13 O -0.174 6.174 14 C -0.393 4.393 15 H 0.094 0.906 16 C 0.040 3.960 17 N -0.859 5.859 18 Si 0.942 3.058 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.237 4.237 23 C -0.050 4.050 24 C -0.091 4.091 25 H 0.084 0.916 26 C -0.115 4.115 27 C -0.117 4.117 28 C 0.055 3.945 29 N -0.691 5.691 30 C 0.063 3.937 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.395 0.605 35 H 0.397 0.603 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.271 0.729 41 H 0.128 0.872 42 H 0.108 0.892 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.029 0.971 49 H 0.344 0.656 50 H 0.031 0.969 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.082 7.681 -25.549 27.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.061 3.939 3 H 0.104 0.896 4 N -0.401 5.401 5 C 0.402 3.598 6 O -0.477 6.477 7 N -0.393 5.393 8 C 0.076 3.924 9 C -0.215 4.215 10 C -0.072 4.072 11 C -0.215 4.215 12 C 0.106 3.894 13 O -0.076 6.076 14 C -0.469 4.469 15 H 0.111 0.889 16 C -0.165 4.165 17 N -0.493 5.493 18 Si 0.767 3.233 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.257 4.257 23 C -0.069 4.069 24 C -0.110 4.110 25 H 0.102 0.898 26 C -0.153 4.153 27 C -0.155 4.155 28 C -0.074 4.074 29 N -0.322 5.322 30 C -0.066 4.066 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.229 0.771 35 H 0.231 0.769 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.130 0.870 39 H 0.136 0.864 40 H 0.081 0.919 41 H 0.146 0.854 42 H 0.126 0.874 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.085 0.915 47 H 0.091 0.909 48 H 0.047 0.953 49 H 0.162 0.838 50 H 0.049 0.951 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.941 8.032 -25.121 27.271 hybrid contribution 1.818 -0.281 0.121 1.844 sum -5.123 7.750 -25.000 26.670 Atomic orbital electron populations 1.22238 0.95392 1.02115 1.02550 1.20755 0.93830 0.96991 0.82336 0.89629 1.45237 1.72216 1.13640 1.09003 1.16032 0.78345 0.85106 0.80345 1.90900 1.57567 1.14472 1.84730 1.45518 1.70549 1.14070 1.09198 1.19809 1.00352 0.92435 0.79853 1.19230 0.93608 1.06089 1.02571 1.20541 0.98157 0.94419 0.94133 1.20219 0.92987 1.05072 1.03214 1.19436 0.92711 0.89571 0.87697 1.83978 1.25428 1.54350 1.43893 1.21404 0.78948 1.23013 1.23532 0.88872 1.25324 1.00603 0.95135 0.95448 1.70045 1.35339 1.22601 1.21359 0.85630 0.80384 0.78668 0.78655 1.19049 1.20069 1.20063 1.21160 1.00412 1.02983 1.01105 1.20645 0.94151 0.96101 0.96011 1.21464 0.95110 1.00671 0.93794 0.89792 1.21643 1.00840 0.99188 0.93647 1.21581 0.94787 1.01547 0.97587 1.21939 0.96207 0.96337 0.92938 1.60248 1.17213 1.52892 1.01843 1.21933 0.94909 0.96981 0.92796 0.92516 0.91860 0.91630 0.77107 0.76926 0.91863 0.91803 0.86955 0.86392 0.91933 0.85442 0.87424 0.91027 0.91947 0.91057 0.91497 0.90872 0.95283 0.83800 0.95057 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.14 37.16 0.34 -1.03 16 2 C 0.17 1.46 2.16 -67.93 -0.15 1.31 16 3 H 0.09 0.93 7.58 -51.93 -0.39 0.53 16 4 N -0.75 -7.10 4.40 -58.67 -0.26 -7.36 16 5 C 0.70 9.26 8.53 -86.91 -0.74 8.51 16 6 O -0.60 -10.20 16.01 5.29 0.08 -10.12 16 7 N -0.74 -9.20 5.55 -66.42 -0.37 -9.57 16 8 C 0.20 2.80 5.80 -5.20 -0.03 2.77 16 9 C -0.21 -3.40 5.25 -104.57 -0.55 -3.95 16 10 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 11 C -0.20 -3.92 9.99 -39.40 -0.39 -4.32 16 12 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 13 O -0.17 -4.81 9.76 0.06 0.00 -4.81 16 14 C -0.39 -10.65 9.49 30.89 0.29 -10.36 16 15 H 0.09 2.33 5.20 -52.48 -0.27 2.06 16 16 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 17 N -0.86 -24.61 13.67 55.48 0.76 -23.85 16 18 Si 0.94 19.98 29.55 -169.99 -5.02 14.96 16 19 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 22 C -0.24 -4.89 9.17 -39.40 -0.36 -5.25 16 23 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 24 C -0.09 -0.63 1.98 -90.55 -0.18 -0.81 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 26 C -0.12 -0.71 4.86 -26.61 -0.13 -0.83 16 27 C -0.12 -0.67 6.09 -26.65 -0.16 -0.84 16 28 C 0.06 0.34 6.55 -3.85 -0.03 0.31 16 29 N -0.69 -4.82 6.84 -113.83 -0.78 -5.60 16 30 C 0.06 0.47 5.66 -3.84 -0.02 0.45 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.45 6.49 -51.93 -0.34 0.11 16 34 H 0.40 2.97 8.40 -40.82 -0.34 2.62 16 35 H 0.40 4.36 8.48 -40.82 -0.35 4.01 16 36 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 37 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 38 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 39 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 40 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.13 2.65 5.64 -52.48 -0.30 2.36 16 42 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.07 0.39 6.58 -51.93 -0.34 0.05 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 49 H 0.34 2.06 8.90 -39.30 -0.35 1.71 16 50 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 51 H 0.08 0.60 7.48 -51.93 -0.39 0.21 16 LS Contribution 409.98 15.07 6.18 6.18 Total: -1.00 -31.63 409.98 -10.76 -42.39 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -8.12 Total: 9.92 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -3.23 Total: -12.14 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: -0.65 Total: -46.38 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.09 Total: -14.92 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.63 -10.76 -42.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841783718.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.667 kcal (2) G-P(sol) polarization free energy of solvation -31.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds