Wall clock time and date at job start Wed Apr 1 2020 04:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46737 * 2 1 4 4 N 1.46501 * 109.47210 * 119.99417 * 2 1 3 5 5 C 1.34776 * 119.99787 * 275.00535 * 4 2 1 6 6 O 1.21590 * 120.00327 * 359.97438 * 5 4 2 7 7 N 1.34784 * 119.99913 * 180.02562 * 5 4 2 8 8 C 1.46494 * 120.00125 * 179.97438 * 7 5 4 9 9 C 1.50695 * 109.47214 * 179.97438 * 8 7 5 10 10 C 1.38304 * 119.93167 * 269.72865 * 9 8 7 11 11 C 1.38101 * 120.06823 * 179.72468 * 10 9 8 12 12 C 1.38873 * 119.93119 * 0.52434 * 11 10 9 13 13 O 1.35750 * 120.06981 * 179.72734 * 12 11 10 14 14 C 1.34827 * 117.00175 * 174.48343 * 13 12 11 15 15 H 1.08003 * 120.00009 * 5.06412 * 14 13 12 16 16 C 1.38658 * 120.00071 * 185.05494 * 14 13 12 17 17 N 1.31555 * 120.00051 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99768 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47149 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46642 * 120.00216 * 18 16 14 21 21 H 1.48496 * 109.47074 * 240.00392 * 18 16 14 22 22 C 1.38873 * 119.86233 * 359.74631 * 12 11 10 23 23 C 1.38099 * 119.93488 * 0.02562 * 22 12 11 24 24 C 1.52996 * 109.47446 * 239.99836 * 2 1 3 25 25 H 1.09002 * 109.53077 * 300.09813 * 24 2 1 26 26 C 1.53120 * 109.50578 * 60.19432 * 24 2 1 27 27 C 1.53114 * 109.16041 * 177.59792 * 26 24 2 28 28 C 1.53035 * 109.27916 * 302.34697 * 27 26 24 29 29 N 1.46825 * 109.52075 * 59.18050 * 28 27 26 30 30 C 1.46851 * 111.20452 * 298.25480 * 29 28 27 31 31 H 1.09002 * 109.47187 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47349 * 300.00466 * 1 2 3 33 33 H 1.09000 * 109.46913 * 60.00245 * 1 2 3 34 34 H 0.97001 * 120.00025 * 94.99997 * 4 2 1 35 35 H 0.96998 * 119.99339 * 359.97438 * 7 5 4 36 36 H 1.08999 * 109.47218 * 299.99903 * 8 7 5 37 37 H 1.09004 * 109.47406 * 59.99914 * 8 7 5 38 38 H 1.08000 * 119.96462 * 359.97438 * 10 9 8 39 39 H 1.08000 * 120.03045 * 180.27162 * 11 10 9 40 40 H 0.96999 * 119.99593 * 179.97438 * 17 16 14 41 41 H 1.08005 * 120.03626 * 180.02562 * 22 12 11 42 42 H 1.07995 * 119.97482 * 179.97438 * 23 22 12 43 43 H 1.09005 * 109.52127 * 297.50127 * 26 24 2 44 44 H 1.08996 * 109.52330 * 57.69256 * 26 24 2 45 45 H 1.09006 * 109.50455 * 62.28985 * 27 26 24 46 46 H 1.09008 * 109.50036 * 182.36383 * 27 26 24 47 47 H 1.09007 * 109.45995 * 179.19790 * 28 27 26 48 48 H 1.09006 * 109.45918 * 299.16001 * 28 27 26 49 49 H 1.00892 * 110.98801 * 174.15928 * 29 28 27 50 50 H 1.08999 * 109.45920 * 301.72922 * 30 29 28 51 51 H 1.08999 * 109.45721 * 181.75929 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1470 -0.0180 2.3571 6 8 1.8582 1.1618 2.4116 7 7 2.5968 -0.6531 3.4576 8 6 2.7371 0.0779 4.7193 9 6 3.2535 -0.8540 5.7851 10 6 2.3642 -1.5655 6.5696 11 6 2.8344 -2.4246 7.5433 12 6 4.2017 -2.5654 7.7415 13 8 4.6669 -3.4049 8.7016 14 6 6.0020 -3.5817 8.7655 15 1 6.6544 -3.0048 8.1268 16 6 6.5375 -4.5041 9.6515 17 7 5.7429 -5.2071 10.4294 18 14 8.3873 -4.7486 9.7406 19 1 9.0536 -3.8432 8.7702 20 1 8.8621 -4.4381 11.1130 21 1 8.7168 -6.1582 9.4098 22 6 5.0921 -1.8452 6.9559 23 6 4.6158 -0.9913 5.9807 24 6 2.0401 -0.7213 -1.2492 25 1 1.6759 -1.7486 -1.2510 26 6 1.5342 0.0027 -2.5000 27 6 2.0979 -0.6895 -3.7439 28 6 3.6266 -0.6909 -3.6722 29 7 4.0603 -1.3954 -2.4592 30 6 3.5704 -0.7217 -1.2499 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 2.2491 -1.6317 1.1528 35 1 2.8275 -1.5942 3.4140 36 1 3.4381 0.9018 4.5858 37 1 1.7666 0.4719 5.0209 38 1 1.3009 -1.4523 6.4179 39 1 2.1394 -2.9833 8.1526 40 1 6.1175 -5.8526 11.0489 41 1 6.1560 -1.9529 7.1074 42 1 5.3076 -0.4307 5.3697 43 1 0.4450 -0.0324 -2.5256 44 1 1.8657 1.0408 -2.4791 45 1 1.7346 -1.7164 -3.7850 46 1 1.7753 -0.1533 -4.6364 47 1 4.0308 -1.1958 -4.5497 48 1 3.9898 0.3365 -3.6451 49 1 5.0643 -1.4928 -2.4374 50 1 3.9339 0.3058 -1.2341 51 1 3.9339 -1.2491 -0.3679 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841783718.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:55 Heat of formation + Delta-G solvation = -68.364893 kcal Electronic energy + Delta-G solvation = -29568.314487 eV Core-core repulsion = 25466.503183 eV Total energy + Delta-G solvation = -4101.811304 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.30776 -40.77011 -39.74847 -38.51901 -36.57929 -35.53851 -34.28833 -33.41641 -32.19214 -31.82374 -31.02106 -29.87112 -27.65410 -26.30694 -25.09268 -24.11647 -23.64134 -22.53799 -22.04088 -21.59365 -20.72930 -19.88336 -19.39269 -18.82021 -17.72084 -17.18564 -16.70345 -16.42263 -16.16727 -16.00605 -15.74324 -15.54997 -15.44158 -15.27159 -15.19368 -14.96678 -14.79083 -14.41706 -14.32530 -14.23579 -14.04511 -13.71799 -13.64860 -13.39974 -13.14011 -13.03089 -12.63884 -12.56522 -12.44732 -12.35040 -12.21716 -12.09300 -11.91820 -11.61858 -11.44892 -11.25813 -11.19739 -11.17301 -10.81278 -10.29912 -9.81699 -9.70448 -9.41945 -9.01525 -8.48449 -6.16530 0.53370 0.58128 1.35953 1.42945 1.53787 1.85570 2.16907 2.22462 2.80723 3.13274 3.19685 3.45701 3.48749 3.80766 3.82684 3.89558 3.91931 4.04059 4.15039 4.17932 4.29192 4.40383 4.45996 4.47839 4.57380 4.58603 4.64983 4.73094 4.76774 4.81582 4.82842 4.87318 4.93559 4.99299 5.04657 5.07551 5.14882 5.19857 5.21398 5.27110 5.39641 5.47787 5.50644 5.54835 5.64846 5.69370 5.76321 6.01676 6.04983 6.08322 6.16886 6.44802 6.96548 7.14576 7.64701 7.75961 8.74569 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014890 B = 0.001795 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.983505 B =15596.604509 C =16881.506420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.169 3.831 3 H 0.064 0.936 4 N -0.730 5.730 5 C 0.702 3.298 6 O -0.636 6.636 7 N -0.732 5.732 8 C 0.205 3.795 9 C -0.180 4.180 10 C -0.043 4.043 11 C -0.204 4.204 12 C 0.123 3.877 13 O -0.229 6.229 14 C -0.412 4.412 15 H 0.104 0.896 16 C -0.022 4.022 17 N -0.919 5.919 18 Si 1.018 2.982 19 H -0.251 1.251 20 H -0.270 1.270 21 H -0.268 1.268 22 C -0.244 4.244 23 C -0.045 4.045 24 C -0.080 4.080 25 H 0.088 0.912 26 C -0.115 4.115 27 C -0.115 4.115 28 C 0.052 3.948 29 N -0.695 5.695 30 C 0.065 3.935 31 H 0.066 0.934 32 H 0.037 0.963 33 H 0.082 0.918 34 H 0.408 0.592 35 H 0.407 0.593 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.147 0.853 39 H 0.115 0.885 40 H 0.273 0.727 41 H 0.120 0.880 42 H 0.138 0.862 43 H 0.081 0.919 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.026 0.974 49 H 0.349 0.651 50 H 0.019 0.981 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.208 8.651 -28.658 30.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.063 3.937 3 H 0.082 0.918 4 N -0.386 5.386 5 C 0.401 3.599 6 O -0.518 6.518 7 N -0.387 5.387 8 C 0.081 3.919 9 C -0.181 4.181 10 C -0.061 4.061 11 C -0.224 4.224 12 C 0.072 3.928 13 O -0.136 6.136 14 C -0.488 4.488 15 H 0.121 0.879 16 C -0.220 4.220 17 N -0.557 5.557 18 Si 0.837 3.163 19 H -0.174 1.174 20 H -0.195 1.195 21 H -0.193 1.193 22 C -0.263 4.263 23 C -0.063 4.063 24 C -0.099 4.099 25 H 0.107 0.893 26 C -0.153 4.153 27 C -0.153 4.153 28 C -0.077 4.077 29 N -0.327 5.327 30 C -0.065 4.065 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.244 0.756 35 H 0.242 0.758 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.164 0.836 39 H 0.133 0.867 40 H 0.082 0.918 41 H 0.138 0.862 42 H 0.156 0.844 43 H 0.100 0.900 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.098 0.902 47 H 0.100 0.900 48 H 0.044 0.956 49 H 0.167 0.833 50 H 0.037 0.963 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.085 9.004 -28.302 30.533 hybrid contribution 1.633 -0.354 0.798 1.852 sum -5.452 8.650 -27.504 29.343 Atomic orbital electron populations 1.22187 0.94778 1.02642 1.02141 1.20788 0.94214 0.96069 0.82587 0.91771 1.45131 1.71145 1.14140 1.08164 1.16111 0.78073 0.84639 0.81030 1.90884 1.59246 1.16305 1.85389 1.45251 1.70530 1.14399 1.08561 1.19683 1.00584 0.91863 0.79746 1.19490 0.93010 1.04084 1.01560 1.20877 1.00092 0.92724 0.92429 1.20449 0.91924 1.05873 1.04124 1.19985 0.94355 0.90129 0.88348 1.83948 1.25703 1.57146 1.46760 1.21869 0.79454 1.23511 1.24010 0.87893 1.26584 1.05980 0.94604 0.94847 1.70185 1.37808 1.24423 1.23237 0.84534 0.73731 0.78959 0.79034 1.17398 1.19504 1.19346 1.21239 0.99868 1.03486 1.01688 1.20932 0.95339 0.95066 0.94992 1.21363 0.94702 1.00649 0.93215 0.89349 1.21657 1.01470 0.98826 0.93335 1.21578 0.94368 1.01486 0.97844 1.22012 0.96630 0.96210 0.92871 1.60277 1.17701 1.52828 1.01890 1.21886 0.95233 0.96247 0.93103 0.91450 0.94356 0.89973 0.75606 0.75779 0.91586 0.91344 0.83568 0.86681 0.91814 0.86217 0.84398 0.90027 0.92406 0.91304 0.90217 0.89961 0.95595 0.83287 0.96306 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.14 71.98 0.66 -1.69 16 2 C 0.17 2.66 2.16 44.99 0.10 2.76 16 3 H 0.06 1.33 7.58 -2.39 -0.02 1.32 16 4 N -0.73 -12.33 4.40 -457.80 -2.02 -14.35 16 5 C 0.70 16.93 8.53 179.05 1.53 18.46 16 6 O -0.64 -20.72 16.01 -4.00 -0.06 -20.79 16 7 N -0.73 -15.95 5.55 -482.30 -2.68 -18.63 16 8 C 0.20 5.07 5.80 85.63 0.50 5.56 16 9 C -0.18 -5.17 5.25 -19.83 -0.10 -5.28 16 10 C -0.04 -1.32 9.69 22.25 0.22 -1.11 16 11 C -0.20 -8.19 9.99 22.39 0.22 -7.96 16 12 C 0.12 5.83 6.65 22.57 0.15 5.98 16 13 O -0.23 -13.41 9.76 -22.71 -0.22 -13.63 16 14 C -0.41 -23.36 9.49 67.92 0.64 -22.72 16 15 H 0.10 5.33 5.20 -2.91 -0.02 5.32 16 16 C -0.02 -1.24 5.49 84.83 0.47 -0.78 16 17 N -0.92 -55.39 13.67 21.61 0.30 -55.10 16 18 Si 1.02 41.90 29.55 68.60 2.03 43.93 16 19 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 20 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 21 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 22 C -0.24 -9.99 9.17 22.39 0.21 -9.79 16 23 C -0.04 -1.43 9.69 22.25 0.22 -1.21 16 24 C -0.08 -0.95 1.98 -10.75 -0.02 -0.97 16 25 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 26 C -0.11 -1.16 4.86 30.67 0.15 -1.01 16 27 C -0.11 -1.05 6.09 30.64 0.19 -0.86 16 28 C 0.05 0.54 6.55 86.33 0.57 1.10 16 29 N -0.70 -8.46 6.84 -514.05 -3.52 -11.98 16 30 C 0.06 0.87 5.66 86.32 0.49 1.36 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.08 0.93 6.49 -2.39 -0.02 0.92 16 34 H 0.41 5.00 8.40 -92.71 -0.78 4.22 16 35 H 0.41 7.50 8.48 -92.71 -0.79 6.72 16 36 H 0.07 1.68 8.08 -2.39 -0.02 1.66 16 37 H 0.07 1.72 8.08 -2.38 -0.02 1.70 16 38 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 39 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 40 H 0.27 15.04 8.31 -92.71 -0.77 14.26 16 41 H 0.12 5.04 5.64 -2.91 -0.02 5.02 16 42 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 43 H 0.08 0.67 6.58 -2.38 -0.02 0.65 16 44 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 46 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 47 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 48 H 0.03 0.29 8.14 -2.38 -0.02 0.27 16 49 H 0.35 3.63 8.90 -89.70 -0.80 2.83 16 50 H 0.02 0.30 8.14 -2.39 -0.02 0.28 16 51 H 0.07 1.01 7.48 -2.39 -0.02 1.00 16 Total: -1.00 -73.00 409.98 -1.41 -74.41 By element: Atomic # 1 Polarization: 35.68 SS G_CDS: -1.40 Total: 34.28 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: 6.16 Total: -18.15 kcal Atomic # 7 Polarization: -92.13 SS G_CDS: -7.92 Total: -100.05 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.29 Total: -34.42 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -73.00 -1.41 -74.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841783718.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.045 kcal (2) G-P(sol) polarization free energy of solvation -73.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds