Wall clock time and date at job start Wed Apr 1 2020 04:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47099 * 2 1 4 4 N 1.46497 * 109.47097 * 120.00235 * 2 1 3 5 5 C 1.34778 * 119.99983 * 274.99279 * 4 2 1 6 6 O 1.21589 * 119.99749 * 0.02562 * 5 4 2 7 7 N 1.34778 * 119.99891 * 179.97438 * 5 4 2 8 8 C 1.46494 * 119.99630 * 180.02562 * 7 5 4 9 9 C 1.50706 * 109.46848 * 180.02562 * 8 7 5 10 10 C 1.38303 * 119.93034 * 90.00157 * 9 8 7 11 11 C 1.38099 * 120.06408 * 179.97438 * 10 9 8 12 12 C 1.38882 * 119.93445 * 359.97438 * 11 10 9 13 13 O 1.35754 * 120.06635 * 179.97438 * 12 11 10 14 14 C 1.34829 * 117.00355 * 354.46667 * 13 12 11 15 15 H 1.07998 * 119.99409 * 5.05373 * 14 13 12 16 16 C 1.38651 * 120.00088 * 185.05761 * 14 13 12 17 17 N 1.31562 * 119.99726 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00090 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47540 * 89.99997 * 18 16 14 20 20 H 1.48502 * 109.47382 * 209.99555 * 18 16 14 21 21 H 1.48502 * 109.47113 * 329.99712 * 18 16 14 22 22 C 1.38874 * 119.85939 * 0.27819 * 12 11 10 23 23 C 1.38105 * 119.93027 * 359.42081 * 22 12 11 24 24 C 1.53001 * 109.46787 * 240.00070 * 2 1 3 25 25 H 1.08999 * 109.50367 * 185.07554 * 24 2 1 26 26 C 1.53122 * 109.50205 * 65.00197 * 24 2 1 27 27 C 1.53118 * 109.15994 * 182.40357 * 26 24 2 28 28 C 1.53038 * 109.28053 * 57.65254 * 27 26 24 29 29 N 1.46848 * 109.52252 * 300.81943 * 28 27 26 30 30 C 1.46850 * 111.19716 * 61.74273 * 29 28 27 31 31 H 1.09000 * 109.46687 * 299.99868 * 1 2 3 32 32 H 1.09004 * 109.47451 * 59.99787 * 1 2 3 33 33 H 1.08995 * 109.47099 * 179.97438 * 1 2 3 34 34 H 0.96997 * 119.99759 * 94.99964 * 4 2 1 35 35 H 0.96997 * 119.99852 * 0.02562 * 7 5 4 36 36 H 1.08999 * 109.47607 * 60.00545 * 8 7 5 37 37 H 1.09000 * 109.47548 * 299.99909 * 8 7 5 38 38 H 1.07996 * 119.96532 * 0.02562 * 10 9 8 39 39 H 1.08007 * 120.03128 * 179.97438 * 11 10 9 40 40 H 0.97003 * 119.99701 * 179.97438 * 17 16 14 41 41 H 1.08004 * 120.03515 * 179.72706 * 22 12 11 42 42 H 1.08002 * 119.95948 * 180.32280 * 23 22 12 43 43 H 1.09001 * 109.52067 * 302.30714 * 26 24 2 44 44 H 1.08994 * 109.52695 * 62.43599 * 26 24 2 45 45 H 1.08995 * 109.50553 * 177.59765 * 27 26 24 46 46 H 1.09004 * 109.50526 * 297.70964 * 27 26 24 47 47 H 1.08994 * 109.46388 * 60.83756 * 28 27 26 48 48 H 1.08998 * 109.46709 * 180.81816 * 28 27 26 49 49 H 1.00898 * 111.00271 * 297.64716 * 29 28 27 50 50 H 1.08997 * 109.46325 * 178.24112 * 30 29 28 51 51 H 1.09002 * 109.46399 * 58.26764 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1472 -0.0183 2.3571 6 8 1.8577 1.1614 2.4118 7 7 2.5959 -0.6538 3.4576 8 6 2.7354 0.0769 4.7196 9 6 3.2520 -0.8552 5.7853 10 6 4.6143 -0.9922 5.9810 11 6 5.0907 -1.8451 6.9571 12 6 4.2003 -2.5653 7.7428 13 8 4.6657 -3.4049 8.7027 14 6 6.0008 -3.5818 8.7665 15 1 6.6530 -3.0049 8.1276 16 6 6.5364 -4.5042 9.6523 17 7 5.7419 -5.2066 10.4309 18 14 8.3862 -4.7488 9.7411 19 1 8.9605 -3.8206 10.7480 20 1 8.6820 -6.1500 10.1342 21 1 8.9867 -4.4703 8.4118 22 6 2.8332 -2.4295 7.5403 23 6 2.3628 -1.5702 6.5667 24 6 2.0399 -0.7213 -1.2493 25 1 3.1261 -0.8010 -1.2056 26 6 1.6352 0.0690 -2.4968 27 6 2.0967 -0.6898 -3.7441 28 6 1.4815 -2.0910 -3.7396 29 7 1.8991 -2.8065 -2.5271 30 6 1.4263 -2.1216 -1.3171 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 2.2490 -1.6318 1.1525 35 1 2.8265 -1.5950 3.4140 36 1 1.7648 0.4709 5.0206 37 1 3.4367 0.9007 4.5870 38 1 5.3061 -0.4309 5.3705 39 1 6.1546 -1.9519 7.1092 40 1 6.1166 -5.8522 11.0503 41 1 2.1384 -2.9915 8.1467 42 1 1.2996 -1.4603 6.4123 43 1 0.5514 0.1831 -2.5200 44 1 2.1045 1.0525 -2.4732 45 1 1.7741 -0.1535 -4.6365 46 1 3.1838 -0.7696 -3.7400 47 1 0.3947 -2.0105 -3.7577 48 1 1.8197 -2.6391 -4.6190 49 1 2.9004 -2.9281 -2.5057 50 1 1.7243 -2.6917 -0.4372 51 1 0.3397 -2.0408 -1.3465 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841783719.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:59 Heat of formation + Delta-G solvation = -45.180424 kcal Electronic energy + Delta-G solvation = -29557.080931 eV Core-core repulsion = 25456.274981 eV Total energy + Delta-G solvation = -4100.805950 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.49716 -39.42141 -38.98478 -36.95487 -35.76059 -34.31003 -32.59235 -32.31844 -31.63100 -30.28712 -29.76628 -28.81942 -25.94241 -25.01290 -24.27110 -24.17053 -22.06165 -21.92744 -20.74258 -20.62752 -19.96103 -18.50245 -18.07062 -17.08686 -16.57381 -16.25801 -15.76703 -15.39832 -15.23469 -14.85999 -14.84510 -14.60457 -14.51891 -14.28036 -13.83866 -13.71266 -13.49304 -13.40920 -13.24023 -13.00249 -12.79361 -12.69751 -12.56493 -12.27092 -12.11196 -11.73361 -11.67873 -11.55833 -11.40034 -11.36459 -11.02257 -10.97400 -10.82632 -10.78117 -10.68894 -10.50017 -10.15743 -9.43614 -9.31220 -8.92185 -8.78415 -8.76938 -8.29150 -7.33919 -6.53836 -4.12766 2.02045 2.12374 2.82344 3.08065 3.08721 3.13479 3.25172 3.80645 3.89508 4.17612 4.24905 4.31017 4.43569 4.55039 4.56816 4.77571 4.87226 4.96309 5.01021 5.05529 5.12280 5.14065 5.16259 5.24062 5.40446 5.42895 5.44458 5.46180 5.53449 5.56948 5.63204 5.66491 5.74537 5.80836 5.81744 5.94682 6.05687 6.11502 6.34809 6.41464 6.54223 6.57711 6.61659 6.79650 6.88908 6.91196 6.99115 7.15199 7.27217 7.34442 7.70817 7.90859 8.05090 8.63996 8.91491 9.59703 10.63652 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015445 B = 0.001740 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.485723 B =16085.148040 C =17073.012092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.170 3.830 3 H 0.086 0.914 4 N -0.746 5.746 5 C 0.702 3.298 6 O -0.597 6.597 7 N -0.738 5.738 8 C 0.198 3.802 9 C -0.214 4.214 10 C -0.050 4.050 11 C -0.237 4.237 12 C 0.161 3.839 13 O -0.174 6.174 14 C -0.393 4.393 15 H 0.093 0.907 16 C 0.040 3.960 17 N -0.859 5.859 18 Si 0.942 3.058 19 H -0.272 1.272 20 H -0.277 1.277 21 H -0.267 1.267 22 C -0.196 4.196 23 C -0.054 4.054 24 C -0.132 4.132 25 H 0.076 0.924 26 C -0.114 4.114 27 C -0.158 4.158 28 C 0.055 3.945 29 N -0.685 5.685 30 C 0.058 3.942 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.394 0.606 35 H 0.397 0.603 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.108 0.892 39 H 0.128 0.872 40 H 0.271 0.729 41 H 0.118 0.882 42 H 0.112 0.888 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.062 0.938 47 H 0.073 0.927 48 H 0.074 0.926 49 H 0.341 0.659 50 H 0.074 0.926 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.312 6.869 -25.580 27.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.064 3.936 3 H 0.104 0.896 4 N -0.402 5.402 5 C 0.402 3.598 6 O -0.476 6.476 7 N -0.393 5.393 8 C 0.075 3.925 9 C -0.215 4.215 10 C -0.069 4.069 11 C -0.257 4.257 12 C 0.106 3.894 13 O -0.076 6.076 14 C -0.469 4.469 15 H 0.111 0.889 16 C -0.165 4.165 17 N -0.493 5.493 18 Si 0.767 3.233 19 H -0.198 1.198 20 H -0.202 1.202 21 H -0.191 1.191 22 C -0.215 4.215 23 C -0.072 4.072 24 C -0.153 4.153 25 H 0.094 0.906 26 C -0.152 4.152 27 C -0.197 4.197 28 C -0.075 4.075 29 N -0.313 5.313 30 C -0.072 4.072 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.228 0.772 35 H 0.231 0.769 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.126 0.874 39 H 0.146 0.854 40 H 0.081 0.919 41 H 0.136 0.864 42 H 0.130 0.870 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.158 0.842 50 H 0.092 0.908 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.199 7.187 -25.153 27.415 hybrid contribution 1.876 -0.176 0.111 1.887 sum -6.324 7.010 -25.042 26.763 Atomic orbital electron populations 1.22315 0.95550 1.02225 1.02541 1.20660 0.93857 0.96871 0.82174 0.89551 1.45259 1.72299 1.13589 1.09076 1.16037 0.78337 0.85111 0.80361 1.90902 1.57500 1.14469 1.84722 1.45519 1.70549 1.14057 1.09174 1.19818 1.00376 0.92453 0.79817 1.19226 0.93613 1.06076 1.02614 1.20645 0.94150 0.96103 0.96013 1.21161 1.00412 1.03024 1.01065 1.19439 0.92715 0.89574 0.87695 1.83978 1.25408 1.54295 1.43928 1.21351 0.78951 1.23048 1.23587 0.88931 1.25319 1.00601 0.95121 0.95446 1.70040 1.35417 1.22606 1.21275 0.85694 0.80387 0.78173 0.79090 1.19798 1.20183 1.19149 1.20222 0.92995 1.05065 1.03207 1.20539 0.98155 0.94392 0.94159 1.22177 1.01090 0.97449 0.94590 0.90582 1.21615 1.01784 0.98639 0.93129 1.22264 1.00983 0.98042 0.98397 1.22043 1.00649 0.91836 0.92944 1.60664 1.18833 1.49904 1.01883 1.22208 1.00830 0.91300 0.92851 0.91842 0.91743 0.92157 0.77217 0.76936 0.91769 0.91848 0.87419 0.85441 0.91881 0.86383 0.86952 0.91112 0.91566 0.91248 0.91963 0.90858 0.90740 0.84182 0.90798 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 8.75 37.16 0.33 -1.03 16 2 C 0.17 1.43 2.35 -67.93 -0.16 1.27 16 3 H 0.09 0.92 7.58 -51.93 -0.39 0.52 16 4 N -0.75 -6.99 5.02 -58.68 -0.29 -7.28 16 5 C 0.70 9.25 8.53 -86.92 -0.74 8.51 16 6 O -0.60 -10.18 16.01 5.29 0.08 -10.10 16 7 N -0.74 -9.19 5.55 -66.41 -0.37 -9.56 16 8 C 0.20 2.80 5.80 -5.19 -0.03 2.77 16 9 C -0.21 -3.40 5.25 -104.57 -0.55 -3.95 16 10 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 11 C -0.24 -4.89 9.17 -39.39 -0.36 -5.25 16 12 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 13 O -0.17 -4.79 9.76 0.04 0.00 -4.79 16 14 C -0.39 -10.65 9.49 30.88 0.29 -10.36 16 15 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 16 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 17 N -0.86 -24.58 13.67 55.48 0.76 -23.83 16 18 Si 0.94 19.96 29.55 -169.99 -5.02 14.94 16 19 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 22 C -0.20 -3.92 9.99 -39.40 -0.39 -4.31 16 23 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 24 C -0.13 -0.81 2.27 -90.54 -0.21 -1.02 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 26 C -0.11 -0.63 5.09 -26.61 -0.14 -0.77 16 27 C -0.16 -0.76 6.08 -26.65 -0.16 -0.93 16 28 C 0.06 0.29 6.55 -3.83 -0.03 0.26 16 29 N -0.69 -4.21 6.87 -113.82 -0.78 -4.99 16 30 C 0.06 0.35 5.24 -3.83 -0.02 0.33 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.43 6.52 -51.93 -0.34 0.09 16 33 H 0.06 0.44 6.32 -51.93 -0.33 0.11 16 34 H 0.39 2.85 7.22 -40.82 -0.29 2.56 16 35 H 0.40 4.34 8.48 -40.82 -0.35 4.00 16 36 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 37 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 38 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.13 2.65 5.64 -52.48 -0.30 2.35 16 40 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.12 2.30 8.06 -52.48 -0.42 1.87 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.07 0.39 6.47 -51.93 -0.34 0.05 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.34 1.86 8.86 -39.29 -0.35 1.52 16 50 H 0.07 0.44 6.81 -51.93 -0.35 0.08 16 51 H 0.08 0.53 6.29 -51.93 -0.33 0.20 16 LS Contribution 404.86 15.07 6.10 6.10 Total: -1.00 -31.56 404.86 -10.65 -42.21 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -7.84 Total: 9.89 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -3.29 Total: -12.57 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.69 Total: -45.67 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: 0.08 Total: -14.89 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.56 -10.65 -42.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841783719.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.974 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds