Wall clock time and date at job start Wed Apr 1 2020 04:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47099 * 2 1 4 4 N 1.46497 * 109.47097 * 120.00235 * 2 1 3 5 5 C 1.34778 * 119.99983 * 274.99279 * 4 2 1 6 6 O 1.21589 * 119.99749 * 0.02562 * 5 4 2 7 7 N 1.34778 * 119.99891 * 179.97438 * 5 4 2 8 8 C 1.46494 * 119.99630 * 180.02562 * 7 5 4 9 9 C 1.50706 * 109.46848 * 180.02562 * 8 7 5 10 10 C 1.38303 * 119.93034 * 90.00157 * 9 8 7 11 11 C 1.38099 * 120.06408 * 179.97438 * 10 9 8 12 12 C 1.38882 * 119.93445 * 359.97438 * 11 10 9 13 13 O 1.35754 * 120.06635 * 179.97438 * 12 11 10 14 14 C 1.34829 * 117.00355 * 354.46667 * 13 12 11 15 15 H 1.07998 * 119.99409 * 5.05373 * 14 13 12 16 16 C 1.38651 * 120.00088 * 185.05761 * 14 13 12 17 17 N 1.31562 * 119.99726 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00090 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47540 * 89.99997 * 18 16 14 20 20 H 1.48502 * 109.47382 * 209.99555 * 18 16 14 21 21 H 1.48502 * 109.47113 * 329.99712 * 18 16 14 22 22 C 1.38874 * 119.85939 * 0.27819 * 12 11 10 23 23 C 1.38105 * 119.93027 * 359.42081 * 22 12 11 24 24 C 1.53001 * 109.46787 * 240.00070 * 2 1 3 25 25 H 1.08999 * 109.50367 * 185.07554 * 24 2 1 26 26 C 1.53122 * 109.50205 * 65.00197 * 24 2 1 27 27 C 1.53118 * 109.15994 * 182.40357 * 26 24 2 28 28 C 1.53038 * 109.28053 * 57.65254 * 27 26 24 29 29 N 1.46848 * 109.52252 * 300.81943 * 28 27 26 30 30 C 1.46850 * 111.19716 * 61.74273 * 29 28 27 31 31 H 1.09000 * 109.46687 * 299.99868 * 1 2 3 32 32 H 1.09004 * 109.47451 * 59.99787 * 1 2 3 33 33 H 1.08995 * 109.47099 * 179.97438 * 1 2 3 34 34 H 0.96997 * 119.99759 * 94.99964 * 4 2 1 35 35 H 0.96997 * 119.99852 * 0.02562 * 7 5 4 36 36 H 1.08999 * 109.47607 * 60.00545 * 8 7 5 37 37 H 1.09000 * 109.47548 * 299.99909 * 8 7 5 38 38 H 1.07996 * 119.96532 * 0.02562 * 10 9 8 39 39 H 1.08007 * 120.03128 * 179.97438 * 11 10 9 40 40 H 0.97003 * 119.99701 * 179.97438 * 17 16 14 41 41 H 1.08004 * 120.03515 * 179.72706 * 22 12 11 42 42 H 1.08002 * 119.95948 * 180.32280 * 23 22 12 43 43 H 1.09001 * 109.52067 * 302.30714 * 26 24 2 44 44 H 1.08994 * 109.52695 * 62.43599 * 26 24 2 45 45 H 1.08995 * 109.50553 * 177.59765 * 27 26 24 46 46 H 1.09004 * 109.50526 * 297.70964 * 27 26 24 47 47 H 1.08994 * 109.46388 * 60.83756 * 28 27 26 48 48 H 1.08998 * 109.46709 * 180.81816 * 28 27 26 49 49 H 1.00898 * 111.00271 * 297.64716 * 29 28 27 50 50 H 1.08997 * 109.46325 * 178.24112 * 30 29 28 51 51 H 1.09002 * 109.46399 * 58.26764 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1472 -0.0183 2.3571 6 8 1.8577 1.1614 2.4118 7 7 2.5959 -0.6538 3.4576 8 6 2.7354 0.0769 4.7196 9 6 3.2520 -0.8552 5.7853 10 6 4.6143 -0.9922 5.9810 11 6 5.0907 -1.8451 6.9571 12 6 4.2003 -2.5653 7.7428 13 8 4.6657 -3.4049 8.7027 14 6 6.0008 -3.5818 8.7665 15 1 6.6530 -3.0049 8.1276 16 6 6.5364 -4.5042 9.6523 17 7 5.7419 -5.2066 10.4309 18 14 8.3862 -4.7488 9.7411 19 1 8.9605 -3.8206 10.7480 20 1 8.6820 -6.1500 10.1342 21 1 8.9867 -4.4703 8.4118 22 6 2.8332 -2.4295 7.5403 23 6 2.3628 -1.5702 6.5667 24 6 2.0399 -0.7213 -1.2493 25 1 3.1261 -0.8010 -1.2056 26 6 1.6352 0.0690 -2.4968 27 6 2.0967 -0.6898 -3.7441 28 6 1.4815 -2.0910 -3.7396 29 7 1.8991 -2.8065 -2.5271 30 6 1.4263 -2.1216 -1.3171 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 2.2490 -1.6318 1.1525 35 1 2.8265 -1.5950 3.4140 36 1 1.7648 0.4709 5.0206 37 1 3.4367 0.9007 4.5870 38 1 5.3061 -0.4309 5.3705 39 1 6.1546 -1.9519 7.1092 40 1 6.1166 -5.8522 11.0503 41 1 2.1384 -2.9915 8.1467 42 1 1.2996 -1.4603 6.4123 43 1 0.5514 0.1831 -2.5200 44 1 2.1045 1.0525 -2.4732 45 1 1.7741 -0.1535 -4.6365 46 1 3.1838 -0.7696 -3.7400 47 1 0.3947 -2.0105 -3.7577 48 1 1.8197 -2.6391 -4.6190 49 1 2.9004 -2.9281 -2.5057 50 1 1.7243 -2.6917 -0.4372 51 1 0.3397 -2.0408 -1.3465 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841783719.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:58 Heat of formation + Delta-G solvation = -67.750471 kcal Electronic energy + Delta-G solvation = -29558.059642 eV Core-core repulsion = 25456.274981 eV Total energy + Delta-G solvation = -4101.784661 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.37662 -40.79895 -39.97120 -38.52755 -36.56188 -35.55202 -34.28614 -33.20746 -32.24766 -31.82810 -31.03064 -29.51839 -27.65567 -26.32620 -25.05643 -24.67764 -23.64259 -22.63204 -22.08517 -21.61022 -20.56620 -19.89030 -19.46784 -18.81383 -17.48259 -16.83229 -16.72996 -16.43447 -16.25011 -16.08638 -15.95274 -15.71097 -15.63811 -15.47718 -15.30330 -14.91866 -14.74995 -14.38587 -14.31057 -13.95326 -13.86484 -13.64221 -13.49048 -13.25539 -13.14101 -13.02459 -12.80904 -12.55054 -12.36672 -12.24278 -12.22084 -12.11618 -12.07061 -11.94039 -11.50616 -11.40480 -11.23284 -11.19900 -10.80504 -10.32415 -9.82069 -9.72627 -9.24001 -9.01751 -8.48175 -6.16394 0.53110 0.57959 1.35950 1.43899 1.52942 1.83856 2.17153 2.20562 2.80560 3.13049 3.34664 3.44128 3.48749 3.73385 3.78551 3.88977 3.90746 4.03837 4.11739 4.17761 4.27638 4.31836 4.43224 4.47340 4.54291 4.57166 4.58665 4.64377 4.74470 4.81382 4.83958 4.95391 5.01037 5.02403 5.04840 5.06343 5.13706 5.14663 5.22561 5.26920 5.31448 5.45287 5.49609 5.53897 5.62003 5.69238 5.76056 6.01563 6.04400 6.10868 6.16626 6.49361 6.96627 7.12496 7.62842 7.75894 8.74557 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015445 B = 0.001740 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.485723 B =16085.148040 C =17073.012092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.171 3.829 3 H 0.064 0.936 4 N -0.731 5.731 5 C 0.700 3.300 6 O -0.636 6.636 7 N -0.732 5.732 8 C 0.205 3.795 9 C -0.181 4.181 10 C -0.045 4.045 11 C -0.244 4.244 12 C 0.123 3.877 13 O -0.229 6.229 14 C -0.413 4.413 15 H 0.104 0.896 16 C -0.022 4.022 17 N -0.918 5.918 18 Si 1.018 2.982 19 H -0.265 1.265 20 H -0.272 1.272 21 H -0.252 1.252 22 C -0.204 4.204 23 C -0.043 4.043 24 C -0.118 4.118 25 H 0.074 0.926 26 C -0.114 4.114 27 C -0.152 4.152 28 C 0.055 3.945 29 N -0.693 5.693 30 C 0.061 3.939 31 H 0.036 0.964 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.407 0.593 35 H 0.407 0.593 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.138 0.862 39 H 0.120 0.880 40 H 0.273 0.727 41 H 0.115 0.885 42 H 0.147 0.853 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.077 0.923 46 H 0.061 0.939 47 H 0.071 0.929 48 H 0.080 0.920 49 H 0.345 0.655 50 H 0.076 0.924 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.257 7.841 -28.640 30.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.065 3.935 3 H 0.082 0.918 4 N -0.387 5.387 5 C 0.400 3.600 6 O -0.518 6.518 7 N -0.387 5.387 8 C 0.081 3.919 9 C -0.182 4.182 10 C -0.063 4.063 11 C -0.263 4.263 12 C 0.072 3.928 13 O -0.135 6.135 14 C -0.489 4.489 15 H 0.121 0.879 16 C -0.220 4.220 17 N -0.556 5.556 18 Si 0.837 3.163 19 H -0.189 1.189 20 H -0.197 1.197 21 H -0.175 1.175 22 C -0.224 4.224 23 C -0.061 4.061 24 C -0.139 4.139 25 H 0.092 0.908 26 C -0.152 4.152 27 C -0.191 4.191 28 C -0.075 4.075 29 N -0.321 5.321 30 C -0.069 4.069 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.243 0.757 35 H 0.242 0.758 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.156 0.844 39 H 0.138 0.862 40 H 0.082 0.918 41 H 0.133 0.867 42 H 0.164 0.836 43 H 0.092 0.908 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.099 0.901 49 H 0.162 0.838 50 H 0.095 0.905 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.163 8.161 -28.285 30.550 hybrid contribution 1.616 -0.250 0.771 1.808 sum -6.547 7.911 -27.514 29.368 Atomic orbital electron populations 1.22256 0.95067 1.02722 1.01970 1.20710 0.94166 0.96002 0.82577 0.91751 1.45155 1.71197 1.14114 1.08223 1.16136 0.78079 0.84662 0.81087 1.90885 1.59186 1.16322 1.85394 1.45251 1.70535 1.14391 1.08534 1.19690 1.00608 0.91880 0.79722 1.19487 0.93018 1.04073 1.01598 1.20933 0.95336 0.95073 0.94998 1.21245 0.99887 1.03520 1.01640 1.19990 0.94361 0.90134 0.88340 1.83949 1.25690 1.57102 1.46793 1.21826 0.79462 1.23547 1.24075 0.87902 1.26580 1.05977 0.94590 0.94844 1.70183 1.37865 1.24422 1.23155 0.84596 0.73708 0.78231 0.79765 1.18949 1.19676 1.17541 1.20452 0.91934 1.05868 1.04115 1.20876 1.00091 0.92697 0.92449 1.22053 1.00804 0.97449 0.93613 0.90787 1.21625 1.01975 0.98468 0.93129 1.22210 1.00856 0.97773 0.98250 1.22065 1.00574 0.91998 0.92821 1.60676 1.19229 1.50119 1.02124 1.22172 1.00642 0.90961 0.93095 0.94433 0.90303 0.91066 0.75664 0.75773 0.91312 0.91580 0.84391 0.86184 0.91817 0.86675 0.83561 0.90809 0.91933 0.90458 0.92054 0.91023 0.90130 0.83755 0.90550 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 8.75 71.98 0.63 -1.71 16 2 C 0.17 2.60 2.35 44.99 0.11 2.70 16 3 H 0.06 1.31 7.58 -2.39 -0.02 1.29 16 4 N -0.73 -12.06 5.02 -457.82 -2.30 -14.36 16 5 C 0.70 16.86 8.53 179.05 1.53 18.39 16 6 O -0.64 -20.70 16.01 -4.00 -0.06 -20.76 16 7 N -0.73 -15.88 5.55 -482.29 -2.68 -18.56 16 8 C 0.20 5.05 5.80 85.64 0.50 5.54 16 9 C -0.18 -5.17 5.25 -19.83 -0.10 -5.27 16 10 C -0.04 -1.43 9.69 22.25 0.22 -1.21 16 11 C -0.24 -9.98 9.17 22.39 0.21 -9.77 16 12 C 0.12 5.82 6.65 22.58 0.15 5.97 16 13 O -0.23 -13.38 9.76 -22.78 -0.22 -13.60 16 14 C -0.41 -23.36 9.49 67.92 0.64 -22.72 16 15 H 0.10 5.31 5.20 -2.91 -0.02 5.29 16 16 C -0.02 -1.23 5.49 84.83 0.47 -0.76 16 17 N -0.92 -55.33 13.67 21.61 0.30 -55.03 16 18 Si 1.02 41.82 29.55 68.60 2.03 43.84 16 19 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 20 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 21 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 22 C -0.20 -8.17 9.99 22.39 0.22 -7.95 16 23 C -0.04 -1.32 9.69 22.25 0.22 -1.10 16 24 C -0.12 -1.21 2.27 -10.74 -0.02 -1.24 16 25 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 26 C -0.11 -1.04 5.09 30.67 0.16 -0.89 16 27 C -0.15 -1.14 6.08 30.65 0.19 -0.95 16 28 C 0.05 0.45 6.55 86.33 0.57 1.02 16 29 N -0.69 -6.98 6.87 -514.00 -3.53 -10.51 16 30 C 0.06 0.59 5.24 86.32 0.45 1.04 16 31 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 0.91 6.52 -2.38 -0.02 0.89 16 33 H 0.07 0.87 6.32 -2.39 -0.02 0.86 16 34 H 0.41 4.73 7.22 -92.71 -0.67 4.07 16 35 H 0.41 7.44 8.48 -92.71 -0.79 6.65 16 36 H 0.07 1.72 8.08 -2.39 -0.02 1.70 16 37 H 0.07 1.68 8.08 -2.39 -0.02 1.66 16 38 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 39 H 0.12 5.03 5.64 -2.91 -0.02 5.02 16 40 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 41 H 0.12 4.59 8.06 -2.91 -0.02 4.56 16 42 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 43 H 0.07 0.64 6.47 -2.39 -0.02 0.63 16 44 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 47 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.34 3.01 8.86 -89.70 -0.79 2.22 16 50 H 0.08 0.70 6.81 -2.39 -0.02 0.68 16 51 H 0.08 0.83 6.29 -2.39 -0.02 0.81 16 Total: -1.00 -72.85 404.86 -1.63 -74.47 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: -1.27 Total: 33.42 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: 6.11 Total: -18.91 kcal Atomic # 7 Polarization: -90.26 SS G_CDS: -8.21 Total: -98.46 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -0.29 Total: -34.36 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -72.85 -1.63 -74.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841783719.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.722 kcal (2) G-P(sol) polarization free energy of solvation -72.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds