Wall clock time and date at job start Wed Apr 1 2020 04:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08990 * 109.47476 * 2 1 4 4 N 1.46506 * 109.47024 * 239.99967 * 2 1 3 5 5 C 1.34775 * 119.99946 * 84.99656 * 4 2 1 6 6 O 1.21584 * 119.99633 * 0.02562 * 5 4 2 7 7 N 1.34771 * 120.00113 * 180.02562 * 5 4 2 8 8 C 1.46498 * 120.00484 * 180.02562 * 7 5 4 9 9 C 1.50692 * 109.47535 * 180.02562 * 8 7 5 10 10 C 1.38296 * 119.93267 * 269.72441 * 9 8 7 11 11 C 1.38098 * 120.07032 * 179.72276 * 10 9 8 12 12 C 1.38877 * 119.93001 * 0.52865 * 11 10 9 13 13 O 1.35760 * 120.06941 * 179.72403 * 12 11 10 14 14 C 1.34822 * 117.00068 * 174.49110 * 13 12 11 15 15 H 1.08003 * 120.00178 * 5.05602 * 14 13 12 16 16 C 1.38649 * 120.00376 * 185.05893 * 14 13 12 17 17 N 1.31557 * 120.00301 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99645 * 359.97438 * 16 14 13 19 19 H 1.48492 * 109.47471 * 89.99830 * 18 16 14 20 20 H 1.48505 * 109.47327 * 209.99986 * 18 16 14 21 21 H 1.48500 * 109.46985 * 329.99733 * 18 16 14 22 22 C 1.38872 * 119.86376 * 359.74569 * 12 11 10 23 23 C 1.38104 * 119.92891 * 0.02562 * 22 12 11 24 24 C 1.53006 * 109.47316 * 120.00390 * 2 1 3 25 25 H 1.08994 * 109.50204 * 180.02562 * 24 2 1 26 26 C 1.53126 * 109.49878 * 300.15410 * 24 2 1 27 27 C 1.53119 * 109.15403 * 177.55684 * 26 24 2 28 28 C 1.53042 * 109.31318 * 302.40141 * 27 26 24 29 29 N 1.46847 * 109.51946 * 59.16238 * 28 27 26 30 30 C 1.46850 * 111.20058 * 298.25584 * 29 28 27 31 31 H 1.08994 * 109.47050 * 59.99502 * 1 2 3 32 32 H 1.08998 * 109.47324 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46333 * 299.99759 * 1 2 3 34 34 H 0.97003 * 119.99492 * 265.00404 * 4 2 1 35 35 H 0.97008 * 119.99841 * 0.02562 * 7 5 4 36 36 H 1.09008 * 109.46509 * 300.00081 * 8 7 5 37 37 H 1.09000 * 109.47185 * 59.99195 * 8 7 5 38 38 H 1.08006 * 119.96346 * 359.97438 * 10 9 8 39 39 H 1.08006 * 120.03266 * 180.26931 * 11 10 9 40 40 H 0.97008 * 119.99736 * 180.02562 * 17 16 14 41 41 H 1.08002 * 120.04152 * 180.02562 * 22 12 11 42 42 H 1.08000 * 119.96560 * 179.97438 * 23 22 12 43 43 H 1.08998 * 109.49093 * 57.67604 * 26 24 2 44 44 H 1.08998 * 109.55461 * 297.47776 * 26 24 2 45 45 H 1.09000 * 109.50664 * 182.44330 * 27 26 24 46 46 H 1.09001 * 109.50885 * 62.36264 * 27 26 24 47 47 H 1.08999 * 109.46427 * 179.17360 * 28 27 26 48 48 H 1.09002 * 109.46147 * 299.16062 * 28 27 26 49 49 H 1.00902 * 111.00116 * 174.16730 * 29 28 27 50 50 H 1.08993 * 109.46747 * 181.75626 * 30 29 28 51 51 H 1.08999 * 109.46455 * 301.74601 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8582 1.1615 -2.4116 7 7 2.5957 -0.6537 -3.4578 8 6 2.7361 0.0771 -4.7196 9 6 3.2512 -0.8552 -5.7856 10 6 4.6131 -0.9896 -5.9854 11 6 5.0884 -1.8475 -6.9576 12 6 4.1971 -2.5673 -7.7425 13 8 4.6612 -3.4073 -8.7028 14 6 3.7493 -4.1600 -9.3504 15 1 2.6964 -4.0203 -9.1546 16 6 4.1630 -5.1137 -10.2678 17 7 3.2732 -5.8486 -10.8994 18 14 5.9840 -5.3551 -10.6070 19 1 6.5304 -6.3741 -9.6753 20 1 6.1702 -5.8140 -12.0071 21 1 6.6992 -4.0689 -10.4086 22 6 2.8300 -2.4259 -7.5433 23 6 2.3610 -1.5699 -6.5662 24 6 2.0401 -0.7214 1.2492 25 1 3.1300 -0.7212 1.2499 26 6 1.5268 -0.0023 2.5000 27 6 1.9908 -0.7652 3.7439 28 6 1.4824 -2.2069 3.6724 29 7 2.0021 -2.8508 2.4593 30 6 1.5303 -2.1644 1.2499 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3632 0.5138 0.8900 34 1 2.2489 -1.6319 -1.1526 35 1 2.8257 -1.5952 -3.4144 36 1 1.7656 0.4719 -5.0207 37 1 3.4377 0.9006 -4.5864 38 1 5.3057 -0.4262 -5.3776 39 1 6.1522 -1.9553 -7.1101 40 1 3.5628 -6.5161 -11.5410 41 1 2.1343 -2.9846 -8.1517 42 1 1.2980 -1.4591 -6.4111 43 1 0.4376 0.0317 2.4787 44 1 1.9236 1.0125 2.5260 45 1 1.5923 -0.2827 4.6364 46 1 3.0800 -0.7651 3.7858 47 1 1.8237 -2.7563 4.5498 48 1 0.3927 -2.2068 3.6450 49 1 1.7592 -3.8299 2.4372 50 1 1.9062 -2.6827 0.3679 51 1 0.4404 -2.1642 1.2342 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841783720.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:02 Heat of formation + Delta-G solvation = -40.657447 kcal Electronic energy + Delta-G solvation = -29580.639996 eV Core-core repulsion = 25480.030177 eV Total energy + Delta-G solvation = -4100.609819 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.44174 -39.42696 -39.00777 -37.10121 -35.75271 -34.34314 -32.76509 -32.46069 -31.62648 -30.38071 -29.89628 -28.87597 -26.09597 -24.93071 -24.27465 -24.17738 -22.18626 -21.79512 -20.70379 -20.59107 -19.47040 -18.59896 -17.97657 -17.39753 -16.96969 -16.25925 -15.66182 -15.41080 -14.98621 -14.93665 -14.88377 -14.66140 -14.31615 -14.18499 -13.97933 -13.88234 -13.60884 -13.41331 -13.34709 -13.24208 -12.82101 -12.77397 -12.68998 -12.30451 -12.27568 -11.99660 -11.58980 -11.47277 -11.34947 -11.05478 -10.96036 -10.84758 -10.82138 -10.76941 -10.67539 -10.22830 -10.16116 -9.48700 -9.30909 -8.95673 -8.89378 -8.78282 -8.37655 -7.48426 -6.50318 -4.17263 1.92370 2.02914 2.81403 3.16721 3.20399 3.24832 3.34616 3.70680 4.16335 4.17789 4.27835 4.37305 4.45960 4.52344 4.66023 4.74856 4.76898 4.95094 5.01682 5.03864 5.05153 5.14620 5.16138 5.23909 5.36644 5.38036 5.38689 5.48228 5.55125 5.57142 5.63007 5.69365 5.75279 5.78380 5.88009 5.91779 6.03222 6.10351 6.25618 6.42506 6.45915 6.54586 6.58099 6.68111 6.85053 6.89912 6.99062 7.13327 7.19457 7.49997 7.70363 7.93913 8.04107 8.63490 8.84318 9.45125 10.56800 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016871 B = 0.001738 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.302064 B =16108.283606 C =16895.278732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.167 3.833 3 H 0.090 0.910 4 N -0.746 5.746 5 C 0.702 3.298 6 O -0.597 6.597 7 N -0.739 5.739 8 C 0.197 3.803 9 C -0.205 4.205 10 C -0.055 4.055 11 C -0.195 4.195 12 C 0.166 3.834 13 O -0.213 6.213 14 C -0.391 4.391 15 H 0.108 0.892 16 C 0.064 3.936 17 N -0.875 5.875 18 Si 0.906 3.094 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.259 1.259 22 C -0.225 4.225 23 C -0.052 4.052 24 C -0.092 4.092 25 H 0.085 0.915 26 C -0.116 4.116 27 C -0.118 4.118 28 C 0.056 3.944 29 N -0.691 5.691 30 C 0.059 3.941 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.394 0.606 35 H 0.397 0.603 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.281 0.719 41 H 0.134 0.866 42 H 0.111 0.889 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.029 0.971 49 H 0.344 0.656 50 H 0.072 0.928 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.862 7.792 27.051 28.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.061 3.939 3 H 0.108 0.892 4 N -0.402 5.402 5 C 0.402 3.598 6 O -0.475 6.475 7 N -0.394 5.394 8 C 0.074 3.926 9 C -0.206 4.206 10 C -0.074 4.074 11 C -0.215 4.215 12 C 0.113 3.887 13 O -0.117 6.117 14 C -0.467 4.467 15 H 0.125 0.875 16 C -0.140 4.140 17 N -0.513 5.513 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.183 1.183 22 C -0.244 4.244 23 C -0.071 4.071 24 C -0.111 4.111 25 H 0.103 0.897 26 C -0.154 4.154 27 C -0.156 4.156 28 C -0.073 4.073 29 N -0.322 5.322 30 C -0.070 4.070 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.228 0.772 35 H 0.231 0.769 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.091 0.909 41 H 0.152 0.848 42 H 0.129 0.871 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.092 0.908 48 H 0.047 0.953 49 H 0.162 0.838 50 H 0.091 0.909 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.349 9.009 26.722 28.398 hybrid contribution -0.194 -1.565 -0.365 1.619 sum -3.544 7.444 26.357 27.616 Atomic orbital electron populations 1.22321 0.95740 1.02030 1.02571 1.20741 0.93742 0.97073 0.82319 0.89230 1.45288 1.72222 1.13641 1.09045 1.16023 0.78310 0.85110 0.80357 1.90901 1.57478 1.14435 1.84725 1.45481 1.70692 1.14030 1.09171 1.19831 1.00528 0.92428 0.79825 1.19301 0.93635 1.05432 1.02263 1.20547 0.94305 0.96372 0.96209 1.20217 0.98806 1.02637 0.99807 1.19184 0.92083 0.89849 0.87546 1.83575 1.37308 1.47566 1.43295 1.20781 0.89661 1.15244 1.20994 0.87512 1.24488 1.00006 0.94373 0.95097 1.69646 1.34200 1.21536 1.25876 0.86172 0.83464 0.79645 0.77584 1.19819 1.20692 1.18320 1.21280 0.95576 1.04517 1.02995 1.20708 0.98349 0.94110 0.93896 1.21454 1.01641 0.94196 0.93818 0.89683 1.21660 1.01028 0.99126 0.93610 1.21582 1.01879 0.94489 0.97606 1.21935 0.96791 0.95705 0.92862 1.60222 1.63766 1.06386 1.01813 1.22028 0.97662 0.94565 0.92765 0.91853 0.92496 0.91641 0.77160 0.76937 0.91690 0.91671 0.86745 0.86377 0.90920 0.84816 0.87110 0.91499 0.91313 0.91473 0.91065 0.90839 0.95253 0.83783 0.90949 0.94368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 8.78 37.16 0.33 -1.06 16 2 C 0.17 1.44 2.41 -67.92 -0.16 1.27 16 3 H 0.09 0.94 7.58 -51.93 -0.39 0.55 16 4 N -0.75 -7.05 5.00 -58.67 -0.29 -7.35 16 5 C 0.70 9.17 8.53 -86.92 -0.74 8.42 16 6 O -0.60 -10.06 16.01 5.29 0.08 -9.98 16 7 N -0.74 -8.99 5.55 -66.42 -0.37 -9.36 16 8 C 0.20 2.69 5.80 -5.20 -0.03 2.66 16 9 C -0.20 -3.13 5.25 -104.58 -0.55 -3.68 16 10 C -0.06 -0.87 9.69 -39.61 -0.38 -1.26 16 11 C -0.20 -3.63 9.99 -39.40 -0.39 -4.02 16 12 C 0.17 3.65 6.65 -39.11 -0.26 3.39 16 13 O -0.21 -5.42 8.59 0.04 0.00 -5.42 16 14 C -0.39 -10.68 9.95 30.88 0.31 -10.37 16 15 H 0.11 2.97 5.44 -52.48 -0.29 2.68 16 16 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 17 N -0.88 -24.64 13.96 55.48 0.77 -23.87 16 18 Si 0.91 21.08 28.62 -169.99 -4.86 16.22 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.26 -6.06 7.11 56.52 0.40 -5.66 16 22 C -0.22 -4.56 9.17 -39.40 -0.36 -4.92 16 23 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 24 C -0.09 -0.63 2.34 -90.53 -0.21 -0.84 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 26 C -0.12 -0.69 5.00 -26.60 -0.13 -0.82 16 27 C -0.12 -0.65 6.09 -26.65 -0.16 -0.81 16 28 C 0.06 0.31 6.55 -3.83 -0.03 0.29 16 29 N -0.69 -4.31 6.85 -113.81 -0.78 -5.08 16 30 C 0.06 0.37 5.32 -3.83 -0.02 0.35 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.43 6.41 -51.93 -0.33 0.10 16 33 H 0.06 0.45 6.38 -51.93 -0.33 0.12 16 34 H 0.39 2.93 6.90 -40.82 -0.28 2.64 16 35 H 0.40 4.22 8.48 -40.82 -0.35 3.88 16 36 H 0.06 0.92 8.08 -51.92 -0.42 0.50 16 37 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 38 H 0.11 1.52 8.06 -52.48 -0.42 1.09 16 39 H 0.12 2.05 8.06 -52.48 -0.42 1.63 16 40 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.13 2.88 5.64 -52.49 -0.30 2.59 16 42 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 43 H 0.07 0.38 6.31 -51.93 -0.33 0.05 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 49 H 0.34 1.74 8.90 -39.29 -0.35 1.39 16 50 H 0.07 0.44 6.54 -51.93 -0.34 0.10 16 51 H 0.04 0.24 6.38 -51.93 -0.33 -0.09 16 LS Contribution 403.18 15.07 6.08 6.08 Total: -1.00 -30.76 403.18 -10.47 -41.22 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -7.82 Total: 8.55 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -3.28 Total: -11.01 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: -0.67 Total: -45.66 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: 0.09 Total: -15.40 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.86 Total: 16.22 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.76 -10.47 -41.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841783720.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.568 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds