Wall clock time and date at job start Wed Apr 1 2020 04:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08990 * 109.47476 * 2 1 4 4 N 1.46506 * 109.47024 * 239.99967 * 2 1 3 5 5 C 1.34775 * 119.99946 * 84.99656 * 4 2 1 6 6 O 1.21584 * 119.99633 * 0.02562 * 5 4 2 7 7 N 1.34771 * 120.00113 * 180.02562 * 5 4 2 8 8 C 1.46498 * 120.00484 * 180.02562 * 7 5 4 9 9 C 1.50692 * 109.47535 * 180.02562 * 8 7 5 10 10 C 1.38296 * 119.93267 * 269.72441 * 9 8 7 11 11 C 1.38098 * 120.07032 * 179.72276 * 10 9 8 12 12 C 1.38877 * 119.93001 * 0.52865 * 11 10 9 13 13 O 1.35760 * 120.06941 * 179.72403 * 12 11 10 14 14 C 1.34822 * 117.00068 * 174.49110 * 13 12 11 15 15 H 1.08003 * 120.00178 * 5.05602 * 14 13 12 16 16 C 1.38649 * 120.00376 * 185.05893 * 14 13 12 17 17 N 1.31557 * 120.00301 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99645 * 359.97438 * 16 14 13 19 19 H 1.48492 * 109.47471 * 89.99830 * 18 16 14 20 20 H 1.48505 * 109.47327 * 209.99986 * 18 16 14 21 21 H 1.48500 * 109.46985 * 329.99733 * 18 16 14 22 22 C 1.38872 * 119.86376 * 359.74569 * 12 11 10 23 23 C 1.38104 * 119.92891 * 0.02562 * 22 12 11 24 24 C 1.53006 * 109.47316 * 120.00390 * 2 1 3 25 25 H 1.08994 * 109.50204 * 180.02562 * 24 2 1 26 26 C 1.53126 * 109.49878 * 300.15410 * 24 2 1 27 27 C 1.53119 * 109.15403 * 177.55684 * 26 24 2 28 28 C 1.53042 * 109.31318 * 302.40141 * 27 26 24 29 29 N 1.46847 * 109.51946 * 59.16238 * 28 27 26 30 30 C 1.46850 * 111.20058 * 298.25584 * 29 28 27 31 31 H 1.08994 * 109.47050 * 59.99502 * 1 2 3 32 32 H 1.08998 * 109.47324 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46333 * 299.99759 * 1 2 3 34 34 H 0.97003 * 119.99492 * 265.00404 * 4 2 1 35 35 H 0.97008 * 119.99841 * 0.02562 * 7 5 4 36 36 H 1.09008 * 109.46509 * 300.00081 * 8 7 5 37 37 H 1.09000 * 109.47185 * 59.99195 * 8 7 5 38 38 H 1.08006 * 119.96346 * 359.97438 * 10 9 8 39 39 H 1.08006 * 120.03266 * 180.26931 * 11 10 9 40 40 H 0.97008 * 119.99736 * 180.02562 * 17 16 14 41 41 H 1.08002 * 120.04152 * 180.02562 * 22 12 11 42 42 H 1.08000 * 119.96560 * 179.97438 * 23 22 12 43 43 H 1.08998 * 109.49093 * 57.67604 * 26 24 2 44 44 H 1.08998 * 109.55461 * 297.47776 * 26 24 2 45 45 H 1.09000 * 109.50664 * 182.44330 * 27 26 24 46 46 H 1.09001 * 109.50885 * 62.36264 * 27 26 24 47 47 H 1.08999 * 109.46427 * 179.17360 * 28 27 26 48 48 H 1.09002 * 109.46147 * 299.16062 * 28 27 26 49 49 H 1.00902 * 111.00116 * 174.16730 * 29 28 27 50 50 H 1.08993 * 109.46747 * 181.75626 * 30 29 28 51 51 H 1.08999 * 109.46455 * 301.74601 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8582 1.1615 -2.4116 7 7 2.5957 -0.6537 -3.4578 8 6 2.7361 0.0771 -4.7196 9 6 3.2512 -0.8552 -5.7856 10 6 4.6131 -0.9896 -5.9854 11 6 5.0884 -1.8475 -6.9576 12 6 4.1971 -2.5673 -7.7425 13 8 4.6612 -3.4073 -8.7028 14 6 3.7493 -4.1600 -9.3504 15 1 2.6964 -4.0203 -9.1546 16 6 4.1630 -5.1137 -10.2678 17 7 3.2732 -5.8486 -10.8994 18 14 5.9840 -5.3551 -10.6070 19 1 6.5304 -6.3741 -9.6753 20 1 6.1702 -5.8140 -12.0071 21 1 6.6992 -4.0689 -10.4086 22 6 2.8300 -2.4259 -7.5433 23 6 2.3610 -1.5699 -6.5662 24 6 2.0401 -0.7214 1.2492 25 1 3.1300 -0.7212 1.2499 26 6 1.5268 -0.0023 2.5000 27 6 1.9908 -0.7652 3.7439 28 6 1.4824 -2.2069 3.6724 29 7 2.0021 -2.8508 2.4593 30 6 1.5303 -2.1644 1.2499 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3632 0.5138 0.8900 34 1 2.2489 -1.6319 -1.1526 35 1 2.8257 -1.5952 -3.4144 36 1 1.7656 0.4719 -5.0207 37 1 3.4377 0.9006 -4.5864 38 1 5.3057 -0.4262 -5.3776 39 1 6.1522 -1.9553 -7.1101 40 1 3.5628 -6.5161 -11.5410 41 1 2.1343 -2.9846 -8.1517 42 1 1.2980 -1.4591 -6.4111 43 1 0.4376 0.0317 2.4787 44 1 1.9236 1.0125 2.5260 45 1 1.5923 -0.2827 4.6364 46 1 3.0800 -0.7651 3.7858 47 1 1.8237 -2.7563 4.5498 48 1 0.3927 -2.2068 3.6450 49 1 1.7592 -3.8299 2.4372 50 1 1.9062 -2.6827 0.3679 51 1 0.4404 -2.1642 1.2342 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841783720.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:01 Heat of formation + Delta-G solvation = -62.253899 kcal Electronic energy + Delta-G solvation = -29581.576488 eV Core-core repulsion = 25480.030177 eV Total energy + Delta-G solvation = -4101.546312 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.36474 -40.88816 -39.84837 -38.62373 -36.53645 -35.55606 -34.44894 -33.39836 -32.32435 -31.86022 -31.12377 -29.57195 -27.73447 -26.20444 -25.07946 -24.76363 -23.71419 -22.56088 -22.01012 -21.56904 -20.06614 -19.86835 -19.51405 -19.08770 -17.70704 -17.05845 -16.81656 -16.41095 -16.36085 -15.98087 -15.77860 -15.69774 -15.56307 -15.42989 -15.31147 -14.83874 -14.71216 -14.53639 -14.28922 -14.12914 -14.05547 -13.94633 -13.80949 -13.34931 -13.28171 -13.09901 -12.91449 -12.57628 -12.47018 -12.31285 -12.17555 -11.94524 -11.93509 -11.58171 -11.41442 -11.30329 -11.23532 -11.19894 -10.90758 -10.31782 -9.84446 -9.72745 -9.34369 -9.10415 -8.50776 -6.23765 0.47668 0.54754 1.32619 1.35653 1.52390 1.83586 2.21202 2.27618 2.74984 3.02655 3.12551 3.24237 3.44408 3.72841 3.85706 3.86920 3.93487 4.02006 4.14364 4.17475 4.23833 4.37648 4.45459 4.45895 4.52699 4.54660 4.64673 4.70443 4.74911 4.82064 4.84467 4.86835 4.95606 4.97342 5.02193 5.04257 5.16079 5.22436 5.29383 5.31936 5.33756 5.49984 5.52086 5.54668 5.62919 5.71392 5.78936 5.88236 6.04593 6.09802 6.19490 6.49988 6.83383 7.12407 7.56333 7.63225 8.60375 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016871 B = 0.001738 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.302064 B =16108.283606 C =16895.278732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.169 3.831 3 H 0.070 0.930 4 N -0.731 5.731 5 C 0.701 3.299 6 O -0.635 6.635 7 N -0.732 5.732 8 C 0.203 3.797 9 C -0.172 4.172 10 C -0.044 4.044 11 C -0.192 4.192 12 C 0.129 3.871 13 O -0.242 6.242 14 C -0.400 4.400 15 H 0.083 0.917 16 C 0.010 3.990 17 N -0.921 5.921 18 Si 0.970 3.030 19 H -0.265 1.265 20 H -0.269 1.269 21 H -0.262 1.262 22 C -0.238 4.238 23 C -0.049 4.049 24 C -0.081 4.081 25 H 0.075 0.925 26 C -0.116 4.116 27 C -0.116 4.116 28 C 0.055 3.945 29 N -0.700 5.700 30 C 0.060 3.940 31 H 0.037 0.963 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.406 0.594 35 H 0.407 0.593 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.153 0.847 39 H 0.131 0.869 40 H 0.285 0.715 41 H 0.109 0.891 42 H 0.133 0.867 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.061 0.939 47 H 0.080 0.920 48 H 0.032 0.968 49 H 0.351 0.649 50 H 0.075 0.925 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.980 8.815 29.935 31.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.063 3.937 3 H 0.088 0.912 4 N -0.388 5.388 5 C 0.401 3.599 6 O -0.517 6.517 7 N -0.388 5.388 8 C 0.079 3.921 9 C -0.173 4.173 10 C -0.062 4.062 11 C -0.211 4.211 12 C 0.080 3.920 13 O -0.149 6.149 14 C -0.476 4.476 15 H 0.100 0.900 16 C -0.188 4.188 17 N -0.561 5.561 18 Si 0.793 3.207 19 H -0.190 1.190 20 H -0.194 1.194 21 H -0.187 1.187 22 C -0.258 4.258 23 C -0.068 4.068 24 C -0.101 4.101 25 H 0.093 0.907 26 C -0.154 4.154 27 C -0.154 4.154 28 C -0.074 4.074 29 N -0.332 5.332 30 C -0.069 4.069 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.243 0.757 35 H 0.242 0.758 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.171 0.829 39 H 0.149 0.851 40 H 0.094 0.906 41 H 0.127 0.873 42 H 0.151 0.849 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.097 0.903 46 H 0.080 0.920 47 H 0.098 0.902 48 H 0.051 0.949 49 H 0.170 0.830 50 H 0.093 0.907 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.473 10.021 29.667 31.411 hybrid contribution -0.585 -1.623 -0.932 1.961 sum -3.057 8.397 28.735 30.092 Atomic orbital electron populations 1.22260 0.95210 1.02481 1.02061 1.20772 0.94051 0.96272 0.82579 0.91198 1.45196 1.71182 1.14137 1.08255 1.16124 0.78065 0.84674 0.81066 1.90884 1.59147 1.16261 1.85389 1.45233 1.70621 1.14380 1.08524 1.19720 1.00661 0.92023 0.79697 1.19534 0.93406 1.03330 1.01053 1.20947 0.95046 0.95148 0.95108 1.20518 0.99166 1.02025 0.99367 1.19737 0.93434 0.90549 0.88327 1.83524 1.36751 1.49276 1.45369 1.20704 0.89226 1.16010 1.21635 0.89969 1.25285 1.04298 0.94207 0.95042 1.69731 1.36044 1.22958 1.27408 0.85219 0.78175 0.79331 0.78021 1.18980 1.19404 1.18655 1.21265 0.94945 1.05530 1.04015 1.20913 0.99939 0.93118 0.92812 1.21332 1.00885 0.94623 0.93213 0.90707 1.21672 1.01317 0.99094 0.93333 1.21577 1.01318 0.94666 0.97840 1.21978 0.96972 0.95650 0.92842 1.60222 1.64045 1.06946 1.01947 1.22000 0.97734 0.94049 0.93110 0.94388 0.91505 0.90128 0.75699 0.75772 0.91784 0.90893 0.82911 0.85084 0.90559 0.87272 0.84922 0.90956 0.91340 0.90251 0.91988 0.90156 0.94930 0.83016 0.90654 0.94147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 8.78 71.98 0.63 -1.77 16 2 C 0.17 2.64 2.41 44.99 0.11 2.75 16 3 H 0.07 1.42 7.58 -2.39 -0.02 1.40 16 4 N -0.73 -12.35 5.00 -457.81 -2.29 -14.64 16 5 C 0.70 16.80 8.53 179.06 1.53 18.33 16 6 O -0.64 -20.50 16.01 -3.98 -0.06 -20.56 16 7 N -0.73 -15.59 5.55 -482.32 -2.68 -18.27 16 8 C 0.20 4.84 5.80 85.63 0.50 5.33 16 9 C -0.17 -4.71 5.25 -19.84 -0.10 -4.81 16 10 C -0.04 -1.22 9.69 22.25 0.22 -1.01 16 11 C -0.19 -6.76 9.99 22.39 0.22 -6.53 16 12 C 0.13 5.72 6.65 22.57 0.15 5.87 16 13 O -0.24 -12.69 8.59 -22.77 -0.20 -12.89 16 14 C -0.40 -22.92 9.95 67.92 0.68 -22.24 16 15 H 0.08 4.94 5.44 -2.91 -0.02 4.92 16 16 C 0.01 0.59 5.49 84.83 0.47 1.06 16 17 N -0.92 -54.05 13.96 21.61 0.30 -53.75 16 18 Si 0.97 44.40 28.62 68.60 1.96 46.37 16 19 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 21 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 22 C -0.24 -9.88 9.17 22.39 0.21 -9.67 16 23 C -0.05 -1.58 9.69 22.25 0.22 -1.36 16 24 C -0.08 -0.96 2.34 -10.74 -0.03 -0.98 16 25 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 26 C -0.12 -1.16 5.00 30.68 0.15 -1.01 16 27 C -0.12 -1.06 6.09 30.65 0.19 -0.87 16 28 C 0.05 0.49 6.55 86.33 0.57 1.05 16 29 N -0.70 -7.23 6.85 -513.99 -3.52 -10.75 16 30 C 0.06 0.62 5.32 86.33 0.46 1.08 16 31 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.86 6.41 -2.39 -0.02 0.84 16 33 H 0.08 0.95 6.38 -2.39 -0.02 0.93 16 34 H 0.41 4.98 6.90 -92.71 -0.64 4.34 16 35 H 0.41 7.25 8.48 -92.70 -0.79 6.47 16 36 H 0.06 1.62 8.08 -2.38 -0.02 1.60 16 37 H 0.07 1.72 8.08 -2.39 -0.02 1.70 16 38 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 39 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 40 H 0.28 15.34 8.31 -92.70 -0.77 14.57 16 41 H 0.11 5.05 5.64 -2.91 -0.02 5.03 16 42 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 43 H 0.07 0.66 6.31 -2.39 -0.02 0.64 16 44 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 45 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.03 0.28 8.14 -2.39 -0.02 0.26 16 49 H 0.35 2.81 8.90 -89.69 -0.80 2.01 16 50 H 0.08 0.72 6.54 -2.39 -0.02 0.70 16 51 H 0.04 0.41 6.38 -2.39 -0.02 0.40 16 Total: -1.00 -69.65 403.18 -1.57 -71.23 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: -1.24 Total: 28.06 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 6.15 Total: -14.79 kcal Atomic # 7 Polarization: -89.23 SS G_CDS: -8.19 Total: -97.41 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -0.26 Total: -33.45 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.96 Total: 46.37 kcal Total: -69.65 -1.57 -71.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841783720.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.973 kcal (2) G-P(sol) polarization free energy of solvation -69.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds