Wall clock time and date at job start Wed Apr 1 2020 04:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47030 * 2 1 4 4 C 1.50695 * 109.47061 * 240.00200 * 2 1 3 5 5 H 1.07999 * 119.99890 * 239.99499 * 4 2 1 6 6 C 1.37874 * 120.00092 * 60.00117 * 4 2 1 7 7 N 1.31519 * 120.00182 * 179.72544 * 6 4 2 8 8 Si 1.86797 * 120.00241 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47275 * 269.73125 * 8 6 4 10 10 H 1.48509 * 109.47036 * 29.72635 * 8 6 4 11 11 H 1.48494 * 109.47465 * 149.72730 * 8 6 4 12 12 N 1.46494 * 109.47292 * 119.99711 * 2 1 3 13 13 N 1.40103 * 120.00663 * 270.00466 * 12 2 1 14 14 C 1.29744 * 120.00501 * 179.97438 * 13 12 2 15 15 C 1.47473 * 119.99891 * 179.97438 * 14 13 12 16 16 C 1.39703 * 120.10265 * 359.73204 * 15 14 13 17 17 C 1.37840 * 119.90050 * 179.73790 * 16 15 14 18 18 C 1.38864 * 120.09640 * 0.53167 * 17 16 15 19 19 O 1.35883 * 119.90003 * 179.69756 * 18 17 16 20 20 C 1.42903 * 116.99951 * 0.02562 * 19 18 17 21 21 C 1.52995 * 109.47223 * 180.02562 * 20 19 18 22 22 N 1.46898 * 109.47151 * 65.06703 * 21 20 19 23 23 C 1.47018 * 111.00290 * 199.40377 * 22 21 20 24 24 C 1.53092 * 109.26182 * 177.60649 * 23 22 21 25 25 O 1.43021 * 109.25500 * 56.84641 * 24 23 22 26 26 C 1.43006 * 113.74026 * 301.32939 * 25 24 23 27 27 C 1.47016 * 110.99871 * 75.76839 * 22 21 20 28 28 C 1.38872 * 120.20334 * 359.72252 * 18 17 16 29 29 C 1.37825 * 120.09929 * 0.02562 * 28 18 17 30 30 H 1.09005 * 109.47030 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47215 * 299.99599 * 1 2 3 32 32 H 1.09001 * 109.47295 * 60.00013 * 1 2 3 33 33 H 0.96994 * 119.99979 * 180.27564 * 7 6 4 34 34 H 0.97008 * 120.00064 * 89.99846 * 12 2 1 35 35 H 1.08005 * 119.99523 * 0.02562 * 14 13 12 36 36 H 1.07997 * 120.05173 * 359.97364 * 16 15 14 37 37 H 1.07995 * 119.95090 * 180.22447 * 17 16 15 38 38 H 1.09000 * 109.46847 * 300.00551 * 20 19 18 39 39 H 1.08999 * 109.46696 * 59.99805 * 20 19 18 40 40 H 1.09000 * 109.47179 * 185.06469 * 21 20 19 41 41 H 1.09004 * 109.47297 * 305.06714 * 21 20 19 42 42 H 1.09003 * 109.50070 * 297.54371 * 23 22 21 43 43 H 1.09005 * 109.50401 * 57.66822 * 23 22 21 44 44 H 1.08997 * 109.50971 * 296.91653 * 24 23 22 45 45 H 1.08998 * 109.54496 * 176.80454 * 24 23 22 46 46 H 1.08995 * 109.50935 * 298.73296 * 26 25 24 47 47 H 1.09004 * 109.53985 * 178.62881 * 26 25 24 48 48 H 1.08992 * 109.50967 * 302.32567 * 27 22 21 49 49 H 1.08994 * 109.50565 * 62.41922 * 27 22 21 50 50 H 1.08003 * 119.94638 * 180.02562 * 28 18 17 51 51 H 1.07999 * 120.05345 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 2.1421 -0.8560 -3.5566 8 14 0.6248 1.2791 -2.6541 9 1 -0.8025 0.8722 -2.7064 10 1 0.8421 2.1735 -1.4886 11 1 0.9804 1.9988 -3.9034 12 7 2.0183 -0.6905 1.1961 13 7 2.2518 0.0299 2.3748 14 6 2.6839 -0.5817 3.4343 15 6 2.9301 0.1769 4.6748 16 6 2.7042 1.5551 4.7098 17 6 2.9306 2.2591 5.8730 18 6 3.3931 1.6023 7.0058 19 8 3.6207 2.3013 8.1485 20 6 3.3625 3.7063 8.1120 21 6 3.6750 4.3181 9.4790 22 7 5.1130 4.1957 9.7531 23 6 5.3891 4.3343 11.1904 24 6 6.8876 4.1412 11.4377 25 8 7.6207 5.0849 10.6520 26 6 7.3762 4.9776 9.2470 27 6 5.8827 5.1793 8.9775 28 6 3.6240 0.2333 6.9741 29 6 3.3955 -0.4797 5.8169 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.9110 -0.5223 -4.4375 34 1 2.1800 -1.6467 1.1722 35 1 2.8639 -1.6463 3.4075 36 1 2.3492 2.0675 3.8280 37 1 2.7528 3.3239 5.9021 38 1 3.9919 4.1718 7.3535 39 1 2.3138 3.8767 7.8684 40 1 3.3935 5.3711 9.4788 41 1 3.1121 3.7917 10.2499 42 1 5.0902 5.3280 11.5242 43 1 4.8288 3.5801 11.7431 44 1 7.1759 3.1292 11.1537 45 1 7.1062 4.2991 12.4938 46 1 7.6788 3.9899 8.8993 47 1 7.9477 5.7405 8.7182 48 1 5.6828 5.0418 7.9149 49 1 5.5911 6.1863 9.2755 50 1 3.9833 -0.2735 7.8576 51 1 3.5758 -1.5442 5.7930 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872357578.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:49 Heat of formation + Delta-G solvation = 1.353168 kcal Electronic energy + Delta-G solvation = -29000.982466 eV Core-core repulsion = 24902.194364 eV Total energy + Delta-G solvation = -4098.788102 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.32433 -39.76053 -37.84568 -36.51283 -36.04723 -34.05358 -31.94326 -31.68758 -31.18107 -30.81278 -29.79272 -27.39709 -26.68612 -25.13775 -24.51920 -23.40592 -23.22343 -21.62742 -20.85100 -20.44355 -20.04726 -18.30493 -17.27867 -17.20746 -16.66971 -16.27407 -15.94485 -15.79608 -15.53957 -15.39053 -15.25748 -14.97713 -14.95441 -14.25030 -14.16639 -13.54186 -13.47611 -13.33005 -13.23215 -12.97798 -12.81460 -12.65482 -12.29184 -12.23608 -12.22179 -11.97657 -11.85133 -11.58301 -11.40505 -11.23373 -11.02601 -10.81999 -10.72718 -10.61253 -10.22010 -10.12309 -9.71571 -9.55289 -9.21152 -8.95597 -8.88215 -8.74427 -8.33101 -6.85545 -6.21819 -4.24079 1.21119 1.45498 2.94986 3.03816 3.20148 3.20386 3.31369 3.33475 3.44116 3.65474 4.06997 4.28485 4.33266 4.43226 4.43785 4.62346 4.69126 4.78419 4.80722 4.84278 4.93872 4.97596 4.98747 5.08506 5.12185 5.16393 5.18730 5.27185 5.31568 5.38402 5.43134 5.48726 5.51105 5.71842 5.85649 6.11399 6.23189 6.30186 6.37717 6.40707 6.42790 6.45475 6.55927 6.62628 6.69080 6.75736 6.80869 6.99127 7.32719 7.41344 7.50736 7.97490 8.39561 8.78716 9.17097 9.38624 10.90698 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018983 B = 0.001568 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.659957 B =17850.141864 C =18288.127941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.272 3.728 3 H 0.041 0.959 4 C -0.533 4.533 5 H 0.078 0.922 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.889 3.111 9 H -0.277 1.277 10 H -0.264 1.264 11 H -0.294 1.294 12 N -0.620 5.620 13 N -0.205 5.205 14 C 0.003 3.997 15 C -0.047 4.047 16 C -0.059 4.059 17 C -0.210 4.210 18 C 0.121 3.879 19 O -0.301 6.301 20 C 0.066 3.934 21 C 0.056 3.944 22 N -0.530 5.530 23 C 0.019 3.981 24 C 0.063 3.937 25 O -0.387 6.387 26 C 0.064 3.936 27 C 0.014 3.986 28 C -0.150 4.150 29 C -0.072 4.072 30 H 0.052 0.948 31 H 0.033 0.967 32 H 0.046 0.954 33 H 0.267 0.733 34 H 0.375 0.625 35 H 0.103 0.897 36 H 0.133 0.867 37 H 0.123 0.877 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.042 0.958 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.098 0.902 46 H 0.062 0.938 47 H 0.099 0.901 48 H 0.087 0.913 49 H 0.043 0.957 50 H 0.128 0.872 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.084 10.868 31.014 33.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.167 3.833 3 H 0.059 0.941 4 C -0.572 4.572 5 H 0.096 0.904 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.719 3.281 9 H -0.203 1.203 10 H -0.189 1.189 11 H -0.221 1.221 12 N -0.356 5.356 13 N -0.017 5.017 14 C -0.206 4.206 15 C -0.050 4.050 16 C -0.080 4.080 17 C -0.229 4.229 18 C 0.075 3.925 19 O -0.215 6.215 20 C -0.010 4.010 21 C -0.072 4.072 22 N -0.255 5.255 23 C -0.109 4.109 24 C -0.014 4.014 25 O -0.306 6.306 26 C -0.013 4.013 27 C -0.114 4.114 28 C -0.169 4.169 29 C -0.093 4.093 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.212 0.788 35 H 0.121 0.879 36 H 0.151 0.849 37 H 0.140 0.860 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.106 0.894 42 H 0.060 0.940 43 H 0.106 0.894 44 H 0.080 0.920 45 H 0.116 0.884 46 H 0.081 0.919 47 H 0.117 0.883 48 H 0.106 0.894 49 H 0.061 0.939 50 H 0.146 0.854 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.089 11.434 30.336 32.816 hybrid contribution -0.986 0.269 -0.267 1.056 sum 4.103 11.703 30.068 32.526 Atomic orbital electron populations 1.22587 0.99976 1.00884 0.98851 1.18848 0.89181 0.94145 0.81096 0.94118 1.21066 1.33061 1.14590 0.88497 0.90366 1.24830 0.95587 0.96783 0.95421 1.69869 1.44900 1.40181 0.98031 0.86828 0.80501 0.83443 0.77319 1.20342 1.18883 1.22147 1.48551 1.72783 1.07897 1.06363 1.73857 1.05589 1.28135 0.94073 1.23470 1.08277 0.96922 0.91920 1.18338 1.01753 0.92849 0.92054 1.21170 0.96117 0.93401 0.97266 1.21132 1.07869 1.00166 0.93685 1.19065 0.96339 0.91718 0.85380 1.86111 1.82720 1.20289 1.32353 1.22756 1.00154 0.80330 0.97757 1.22184 0.88705 0.99107 0.97192 1.62145 1.06739 1.50067 1.06557 1.22803 0.98111 1.01065 0.88927 1.22669 0.89518 0.93332 0.95880 1.87985 1.67046 1.57785 1.17739 1.22661 0.94090 1.02556 0.82039 1.22879 0.95148 0.93750 0.99615 1.20207 1.06413 0.91072 0.99221 1.20957 0.97519 0.99631 0.91161 0.92918 0.94781 0.93588 0.92266 0.78788 0.87924 0.84929 0.85956 0.92032 0.91571 0.92300 0.89438 0.94021 0.89375 0.91997 0.88439 0.91934 0.88342 0.89448 0.93882 0.85419 0.85242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 8.99 37.16 0.33 -3.29 16 2 C 0.27 6.50 2.82 -69.09 -0.20 6.30 16 3 H 0.04 1.03 7.20 -51.93 -0.37 0.66 16 4 C -0.53 -14.66 9.32 -34.44 -0.32 -14.98 16 5 H 0.08 2.31 8.03 -52.49 -0.42 1.89 16 6 C 0.08 2.17 5.45 -17.82 -0.10 2.08 16 7 N -0.89 -26.57 13.96 55.43 0.77 -25.79 16 8 Si 0.89 21.44 24.37 -169.99 -4.14 17.30 16 9 H -0.28 -6.47 6.88 56.52 0.39 -6.08 16 10 H -0.26 -6.16 6.52 56.52 0.37 -5.79 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 N -0.62 -13.17 6.10 -5.89 -0.04 -13.20 16 13 N -0.20 -3.96 10.61 32.16 0.34 -3.62 16 14 C 0.00 0.05 10.75 -14.67 -0.16 -0.11 16 15 C -0.05 -0.68 5.87 -105.04 -0.62 -1.29 16 16 C -0.06 -0.83 9.57 -39.18 -0.37 -1.20 16 17 C -0.21 -2.51 9.02 -39.50 -0.36 -2.87 16 18 C 0.12 1.44 6.69 -39.12 -0.26 1.17 16 19 O -0.30 -3.25 10.08 -19.37 -0.20 -3.44 16 20 C 0.07 0.51 4.93 37.16 0.18 0.69 16 21 C 0.06 0.35 5.38 -3.83 -0.02 0.33 16 22 N -0.53 -3.93 4.61 -234.31 -1.08 -5.01 16 23 C 0.02 0.12 5.60 -3.71 -0.02 0.10 16 24 C 0.06 0.41 7.01 37.21 0.26 0.67 16 25 O -0.39 -3.33 10.83 -35.23 -0.38 -3.71 16 26 C 0.06 0.45 7.01 37.21 0.26 0.71 16 27 C 0.01 0.10 5.47 -3.71 -0.02 0.08 16 28 C -0.15 -1.73 9.97 -39.50 -0.39 -2.12 16 29 C -0.07 -0.86 9.78 -39.18 -0.38 -1.24 16 30 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.05 1.04 3.28 -51.93 -0.17 0.87 16 33 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.38 7.52 8.58 -182.59 -1.57 5.95 16 35 H 0.10 1.48 8.02 -52.48 -0.42 1.06 16 36 H 0.13 1.96 7.55 -52.49 -0.40 1.57 16 37 H 0.12 1.20 6.27 -52.49 -0.33 0.87 16 38 H 0.06 0.46 6.26 -51.93 -0.32 0.14 16 39 H 0.07 0.44 7.65 -51.93 -0.40 0.05 16 40 H 0.06 0.29 7.99 -51.93 -0.41 -0.12 16 41 H 0.09 0.53 7.86 -51.93 -0.41 0.12 16 42 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.09 0.46 8.02 -51.93 -0.42 0.05 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.09 0.57 6.74 -51.93 -0.35 0.22 16 49 H 0.04 0.28 8.13 -51.93 -0.42 -0.14 16 50 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 51 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 407.68 15.07 6.14 6.14 Total: -1.00 -31.77 407.68 -10.15 -41.92 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -9.40 Total: 4.39 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -2.18 Total: -14.97 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: 0.00 Total: -47.62 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.58 Total: -7.16 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.14 Total: 17.30 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.77 -10.15 -41.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872357578.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.274 kcal (2) G-P(sol) polarization free energy of solvation -31.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds