Wall clock time and date at job start Wed Apr 1 2020 04:55:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09005 * 109.47030 * 2 1
4 4 C 1.50695 * 109.47061 * 240.00200 * 2 1 3
5 5 H 1.07999 * 119.99890 * 239.99499 * 4 2 1
6 6 C 1.37874 * 120.00092 * 60.00117 * 4 2 1
7 7 N 1.31519 * 120.00182 * 179.72544 * 6 4 2
8 8 Si 1.86797 * 120.00241 * 359.97438 * 6 4 2
9 9 H 1.48504 * 109.47275 * 269.73125 * 8 6 4
10 10 H 1.48509 * 109.47036 * 29.72635 * 8 6 4
11 11 H 1.48494 * 109.47465 * 149.72730 * 8 6 4
12 12 N 1.46494 * 109.47292 * 119.99711 * 2 1 3
13 13 N 1.40103 * 120.00663 * 270.00466 * 12 2 1
14 14 C 1.29744 * 120.00501 * 179.97438 * 13 12 2
15 15 C 1.47473 * 119.99891 * 179.97438 * 14 13 12
16 16 C 1.39703 * 120.10265 * 359.73204 * 15 14 13
17 17 C 1.37840 * 119.90050 * 179.73790 * 16 15 14
18 18 C 1.38864 * 120.09640 * 0.53167 * 17 16 15
19 19 O 1.35883 * 119.90003 * 179.69756 * 18 17 16
20 20 C 1.42903 * 116.99951 * 0.02562 * 19 18 17
21 21 C 1.52995 * 109.47223 * 180.02562 * 20 19 18
22 22 N 1.46898 * 109.47151 * 65.06703 * 21 20 19
23 23 C 1.47018 * 111.00290 * 199.40377 * 22 21 20
24 24 C 1.53092 * 109.26182 * 177.60649 * 23 22 21
25 25 O 1.43021 * 109.25500 * 56.84641 * 24 23 22
26 26 C 1.43006 * 113.74026 * 301.32939 * 25 24 23
27 27 C 1.47016 * 110.99871 * 75.76839 * 22 21 20
28 28 C 1.38872 * 120.20334 * 359.72252 * 18 17 16
29 29 C 1.37825 * 120.09929 * 0.02562 * 28 18 17
30 30 H 1.09005 * 109.47030 * 180.02562 * 1 2 3
31 31 H 1.09003 * 109.47215 * 299.99599 * 1 2 3
32 32 H 1.09001 * 109.47295 * 60.00013 * 1 2 3
33 33 H 0.96994 * 119.99979 * 180.27564 * 7 6 4
34 34 H 0.97008 * 120.00064 * 89.99846 * 12 2 1
35 35 H 1.08005 * 119.99523 * 0.02562 * 14 13 12
36 36 H 1.07997 * 120.05173 * 359.97364 * 16 15 14
37 37 H 1.07995 * 119.95090 * 180.22447 * 17 16 15
38 38 H 1.09000 * 109.46847 * 300.00551 * 20 19 18
39 39 H 1.08999 * 109.46696 * 59.99805 * 20 19 18
40 40 H 1.09000 * 109.47179 * 185.06469 * 21 20 19
41 41 H 1.09004 * 109.47297 * 305.06714 * 21 20 19
42 42 H 1.09003 * 109.50070 * 297.54371 * 23 22 21
43 43 H 1.09005 * 109.50401 * 57.66822 * 23 22 21
44 44 H 1.08997 * 109.50971 * 296.91653 * 24 23 22
45 45 H 1.08998 * 109.54496 * 176.80454 * 24 23 22
46 46 H 1.08995 * 109.50935 * 298.73296 * 26 25 24
47 47 H 1.09004 * 109.53985 * 178.62881 * 26 25 24
48 48 H 1.08992 * 109.50967 * 302.32567 * 27 22 21
49 49 H 1.08994 * 109.50565 * 62.41922 * 27 22 21
50 50 H 1.08003 * 119.94638 * 180.02562 * 28 18 17
51 51 H 1.07999 * 120.05345 * 179.97438 * 29 28 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7103 -1.2305
5 1 2.6533 -1.5884 -1.1314
6 6 1.6992 -0.2393 -2.4827
7 7 2.1421 -0.8560 -3.5566
8 14 0.6248 1.2791 -2.6541
9 1 -0.8025 0.8722 -2.7064
10 1 0.8421 2.1735 -1.4886
11 1 0.9804 1.9988 -3.9034
12 7 2.0183 -0.6905 1.1961
13 7 2.2518 0.0299 2.3748
14 6 2.6839 -0.5817 3.4343
15 6 2.9301 0.1769 4.6748
16 6 2.7042 1.5551 4.7098
17 6 2.9306 2.2591 5.8730
18 6 3.3931 1.6023 7.0058
19 8 3.6207 2.3013 8.1485
20 6 3.3625 3.7063 8.1120
21 6 3.6750 4.3181 9.4790
22 7 5.1130 4.1957 9.7531
23 6 5.3891 4.3343 11.1904
24 6 6.8876 4.1412 11.4377
25 8 7.6207 5.0849 10.6520
26 6 7.3762 4.9776 9.2470
27 6 5.8827 5.1793 8.9775
28 6 3.6240 0.2333 6.9741
29 6 3.3955 -0.4797 5.8169
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3634 0.5138 0.8900
32 1 -0.3634 0.5138 -0.8900
33 1 1.9110 -0.5223 -4.4375
34 1 2.1800 -1.6467 1.1722
35 1 2.8639 -1.6463 3.4075
36 1 2.3492 2.0675 3.8280
37 1 2.7528 3.3239 5.9021
38 1 3.9919 4.1718 7.3535
39 1 2.3138 3.8767 7.8684
40 1 3.3935 5.3711 9.4788
41 1 3.1121 3.7917 10.2499
42 1 5.0902 5.3280 11.5242
43 1 4.8288 3.5801 11.7431
44 1 7.1759 3.1292 11.1537
45 1 7.1062 4.2991 12.4938
46 1 7.6788 3.9899 8.8993
47 1 7.9477 5.7405 8.7182
48 1 5.6828 5.0418 7.9149
49 1 5.5911 6.1863 9.2755
50 1 3.9833 -0.2735 7.8576
51 1 3.5758 -1.5442 5.7930
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000872357578.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:55:49
Heat of formation + Delta-G solvation = 1.353168 kcal
Electronic energy + Delta-G solvation = -29000.982466 eV
Core-core repulsion = 24902.194364 eV
Total energy + Delta-G solvation = -4098.788102 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-40.32433 -39.76053 -37.84568 -36.51283 -36.04723 -34.05358 -31.94326 -31.68758
-31.18107 -30.81278 -29.79272 -27.39709 -26.68612 -25.13775 -24.51920 -23.40592
-23.22343 -21.62742 -20.85100 -20.44355 -20.04726 -18.30493 -17.27867 -17.20746
-16.66971 -16.27407 -15.94485 -15.79608 -15.53957 -15.39053 -15.25748 -14.97713
-14.95441 -14.25030 -14.16639 -13.54186 -13.47611 -13.33005 -13.23215 -12.97798
-12.81460 -12.65482 -12.29184 -12.23608 -12.22179 -11.97657 -11.85133 -11.58301
-11.40505 -11.23373 -11.02601 -10.81999 -10.72718 -10.61253 -10.22010 -10.12309
-9.71571 -9.55289 -9.21152 -8.95597 -8.88215 -8.74427 -8.33101 -6.85545
-6.21819 -4.24079 1.21119 1.45498 2.94986 3.03816 3.20148 3.20386
3.31369 3.33475 3.44116 3.65474 4.06997 4.28485 4.33266 4.43226
4.43785 4.62346 4.69126 4.78419 4.80722 4.84278 4.93872 4.97596
4.98747 5.08506 5.12185 5.16393 5.18730 5.27185 5.31568 5.38402
5.43134 5.48726 5.51105 5.71842 5.85649 6.11399 6.23189 6.30186
6.37717 6.40707 6.42790 6.45475 6.55927 6.62628 6.69080 6.75736
6.80869 6.99127 7.32719 7.41344 7.50736 7.97490 8.39561 8.78716
9.17097 9.38624 10.90698
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.018983 B = 0.001568 C = 0.001531
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1474.659957 B =17850.141864 C =18288.127941
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.272 3.728
3 H 0.041 0.959
4 C -0.533 4.533
5 H 0.078 0.922
6 C 0.077 3.923
7 N -0.893 5.893
8 Si 0.889 3.111
9 H -0.277 1.277
10 H -0.264 1.264
11 H -0.294 1.294
12 N -0.620 5.620
13 N -0.205 5.205
14 C 0.003 3.997
15 C -0.047 4.047
16 C -0.059 4.059
17 C -0.210 4.210
18 C 0.121 3.879
19 O -0.301 6.301
20 C 0.066 3.934
21 C 0.056 3.944
22 N -0.530 5.530
23 C 0.019 3.981
24 C 0.063 3.937
25 O -0.387 6.387
26 C 0.064 3.936
27 C 0.014 3.986
28 C -0.150 4.150
29 C -0.072 4.072
30 H 0.052 0.948
31 H 0.033 0.967
32 H 0.046 0.954
33 H 0.267 0.733
34 H 0.375 0.625
35 H 0.103 0.897
36 H 0.133 0.867
37 H 0.123 0.877
38 H 0.062 0.938
39 H 0.066 0.934
40 H 0.059 0.941
41 H 0.087 0.913
42 H 0.042 0.958
43 H 0.088 0.912
44 H 0.062 0.938
45 H 0.098 0.902
46 H 0.062 0.938
47 H 0.099 0.901
48 H 0.087 0.913
49 H 0.043 0.957
50 H 0.128 0.872
51 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.084 10.868 31.014 33.254
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.167 3.833
3 H 0.059 0.941
4 C -0.572 4.572
5 H 0.096 0.904
6 C -0.126 4.126
7 N -0.530 5.530
8 Si 0.719 3.281
9 H -0.203 1.203
10 H -0.189 1.189
11 H -0.221 1.221
12 N -0.356 5.356
13 N -0.017 5.017
14 C -0.206 4.206
15 C -0.050 4.050
16 C -0.080 4.080
17 C -0.229 4.229
18 C 0.075 3.925
19 O -0.215 6.215
20 C -0.010 4.010
21 C -0.072 4.072
22 N -0.255 5.255
23 C -0.109 4.109
24 C -0.014 4.014
25 O -0.306 6.306
26 C -0.013 4.013
27 C -0.114 4.114
28 C -0.169 4.169
29 C -0.093 4.093
30 H 0.071 0.929
31 H 0.052 0.948
32 H 0.064 0.936
33 H 0.077 0.923
34 H 0.212 0.788
35 H 0.121 0.879
36 H 0.151 0.849
37 H 0.140 0.860
38 H 0.080 0.920
39 H 0.084 0.916
40 H 0.077 0.923
41 H 0.106 0.894
42 H 0.060 0.940
43 H 0.106 0.894
44 H 0.080 0.920
45 H 0.116 0.884
46 H 0.081 0.919
47 H 0.117 0.883
48 H 0.106 0.894
49 H 0.061 0.939
50 H 0.146 0.854
51 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges 5.089 11.434 30.336 32.816
hybrid contribution -0.986 0.269 -0.267 1.056
sum 4.103 11.703 30.068 32.526
Atomic orbital electron populations
1.22587 0.99976 1.00884 0.98851 1.18848 0.89181 0.94145 0.81096
0.94118 1.21066 1.33061 1.14590 0.88497 0.90366 1.24830 0.95587
0.96783 0.95421 1.69869 1.44900 1.40181 0.98031 0.86828 0.80501
0.83443 0.77319 1.20342 1.18883 1.22147 1.48551 1.72783 1.07897
1.06363 1.73857 1.05589 1.28135 0.94073 1.23470 1.08277 0.96922
0.91920 1.18338 1.01753 0.92849 0.92054 1.21170 0.96117 0.93401
0.97266 1.21132 1.07869 1.00166 0.93685 1.19065 0.96339 0.91718
0.85380 1.86111 1.82720 1.20289 1.32353 1.22756 1.00154 0.80330
0.97757 1.22184 0.88705 0.99107 0.97192 1.62145 1.06739 1.50067
1.06557 1.22803 0.98111 1.01065 0.88927 1.22669 0.89518 0.93332
0.95880 1.87985 1.67046 1.57785 1.17739 1.22661 0.94090 1.02556
0.82039 1.22879 0.95148 0.93750 0.99615 1.20207 1.06413 0.91072
0.99221 1.20957 0.97519 0.99631 0.91161 0.92918 0.94781 0.93588
0.92266 0.78788 0.87924 0.84929 0.85956 0.92032 0.91571 0.92300
0.89438 0.94021 0.89375 0.91997 0.88439 0.91934 0.88342 0.89448
0.93882 0.85419 0.85242
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.63 8.99 37.16 0.33 -3.29 16
2 C 0.27 6.50 2.82 -69.09 -0.20 6.30 16
3 H 0.04 1.03 7.20 -51.93 -0.37 0.66 16
4 C -0.53 -14.66 9.32 -34.44 -0.32 -14.98 16
5 H 0.08 2.31 8.03 -52.49 -0.42 1.89 16
6 C 0.08 2.17 5.45 -17.82 -0.10 2.08 16
7 N -0.89 -26.57 13.96 55.43 0.77 -25.79 16
8 Si 0.89 21.44 24.37 -169.99 -4.14 17.30 16
9 H -0.28 -6.47 6.88 56.52 0.39 -6.08 16
10 H -0.26 -6.16 6.52 56.52 0.37 -5.79 16
11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
12 N -0.62 -13.17 6.10 -5.89 -0.04 -13.20 16
13 N -0.20 -3.96 10.61 32.16 0.34 -3.62 16
14 C 0.00 0.05 10.75 -14.67 -0.16 -0.11 16
15 C -0.05 -0.68 5.87 -105.04 -0.62 -1.29 16
16 C -0.06 -0.83 9.57 -39.18 -0.37 -1.20 16
17 C -0.21 -2.51 9.02 -39.50 -0.36 -2.87 16
18 C 0.12 1.44 6.69 -39.12 -0.26 1.17 16
19 O -0.30 -3.25 10.08 -19.37 -0.20 -3.44 16
20 C 0.07 0.51 4.93 37.16 0.18 0.69 16
21 C 0.06 0.35 5.38 -3.83 -0.02 0.33 16
22 N -0.53 -3.93 4.61 -234.31 -1.08 -5.01 16
23 C 0.02 0.12 5.60 -3.71 -0.02 0.10 16
24 C 0.06 0.41 7.01 37.21 0.26 0.67 16
25 O -0.39 -3.33 10.83 -35.23 -0.38 -3.71 16
26 C 0.06 0.45 7.01 37.21 0.26 0.71 16
27 C 0.01 0.10 5.47 -3.71 -0.02 0.08 16
28 C -0.15 -1.73 9.97 -39.50 -0.39 -2.12 16
29 C -0.07 -0.86 9.78 -39.18 -0.38 -1.24 16
30 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16
31 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16
32 H 0.05 1.04 3.28 -51.93 -0.17 0.87 16
33 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16
34 H 0.38 7.52 8.58 -182.59 -1.57 5.95 16
35 H 0.10 1.48 8.02 -52.48 -0.42 1.06 16
36 H 0.13 1.96 7.55 -52.49 -0.40 1.57 16
37 H 0.12 1.20 6.27 -52.49 -0.33 0.87 16
38 H 0.06 0.46 6.26 -51.93 -0.32 0.14 16
39 H 0.07 0.44 7.65 -51.93 -0.40 0.05 16
40 H 0.06 0.29 7.99 -51.93 -0.41 -0.12 16
41 H 0.09 0.53 7.86 -51.93 -0.41 0.12 16
42 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16
43 H 0.09 0.46 8.02 -51.93 -0.42 0.05 16
44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
45 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16
46 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16
47 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16
48 H 0.09 0.57 6.74 -51.93 -0.35 0.22 16
49 H 0.04 0.28 8.13 -51.93 -0.42 -0.14 16
50 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16
51 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16
LS Contribution 407.68 15.07 6.14 6.14
Total: -1.00 -31.77 407.68 -10.15 -41.92
By element:
Atomic # 1 Polarization: 13.79 SS G_CDS: -9.40 Total: 4.39 kcal
Atomic # 6 Polarization: -12.79 SS G_CDS: -2.18 Total: -14.97 kcal
Atomic # 7 Polarization: -47.62 SS G_CDS: 0.00 Total: -47.62 kcal
Atomic # 8 Polarization: -6.58 SS G_CDS: -0.58 Total: -7.16 kcal
Atomic # 14 Polarization: 21.44 SS G_CDS: -4.14 Total: 17.30 kcal
Total LS contribution 6.14 Total: 6.14 kcal
Total: -31.77 -10.15 -41.92 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000872357578.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 43.274 kcal
(2) G-P(sol) polarization free energy of solvation -31.767 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.508 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.921 kcal
(6) G-S(sol) free energy of system = (1) + (5) 1.353 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds