Wall clock time and date at job start Wed Apr 1 2020 04:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47030 * 2 1 4 4 C 1.50695 * 109.47061 * 240.00200 * 2 1 3 5 5 H 1.07999 * 119.99890 * 239.99499 * 4 2 1 6 6 C 1.37874 * 120.00092 * 60.00117 * 4 2 1 7 7 N 1.31519 * 120.00182 * 179.72544 * 6 4 2 8 8 Si 1.86797 * 120.00241 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47275 * 269.73125 * 8 6 4 10 10 H 1.48509 * 109.47036 * 29.72635 * 8 6 4 11 11 H 1.48494 * 109.47465 * 149.72730 * 8 6 4 12 12 N 1.46494 * 109.47292 * 119.99711 * 2 1 3 13 13 N 1.40103 * 120.00663 * 270.00466 * 12 2 1 14 14 C 1.29744 * 120.00501 * 179.97438 * 13 12 2 15 15 C 1.47473 * 119.99891 * 179.97438 * 14 13 12 16 16 C 1.39703 * 120.10265 * 359.73204 * 15 14 13 17 17 C 1.37840 * 119.90050 * 179.73790 * 16 15 14 18 18 C 1.38864 * 120.09640 * 0.53167 * 17 16 15 19 19 O 1.35883 * 119.90003 * 179.69756 * 18 17 16 20 20 C 1.42903 * 116.99951 * 0.02562 * 19 18 17 21 21 C 1.52995 * 109.47223 * 180.02562 * 20 19 18 22 22 N 1.46898 * 109.47151 * 65.06703 * 21 20 19 23 23 C 1.47018 * 111.00290 * 199.40377 * 22 21 20 24 24 C 1.53092 * 109.26182 * 177.60649 * 23 22 21 25 25 O 1.43021 * 109.25500 * 56.84641 * 24 23 22 26 26 C 1.43006 * 113.74026 * 301.32939 * 25 24 23 27 27 C 1.47016 * 110.99871 * 75.76839 * 22 21 20 28 28 C 1.38872 * 120.20334 * 359.72252 * 18 17 16 29 29 C 1.37825 * 120.09929 * 0.02562 * 28 18 17 30 30 H 1.09005 * 109.47030 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47215 * 299.99599 * 1 2 3 32 32 H 1.09001 * 109.47295 * 60.00013 * 1 2 3 33 33 H 0.96994 * 119.99979 * 180.27564 * 7 6 4 34 34 H 0.97008 * 120.00064 * 89.99846 * 12 2 1 35 35 H 1.08005 * 119.99523 * 0.02562 * 14 13 12 36 36 H 1.07997 * 120.05173 * 359.97364 * 16 15 14 37 37 H 1.07995 * 119.95090 * 180.22447 * 17 16 15 38 38 H 1.09000 * 109.46847 * 300.00551 * 20 19 18 39 39 H 1.08999 * 109.46696 * 59.99805 * 20 19 18 40 40 H 1.09000 * 109.47179 * 185.06469 * 21 20 19 41 41 H 1.09004 * 109.47297 * 305.06714 * 21 20 19 42 42 H 1.09003 * 109.50070 * 297.54371 * 23 22 21 43 43 H 1.09005 * 109.50401 * 57.66822 * 23 22 21 44 44 H 1.08997 * 109.50971 * 296.91653 * 24 23 22 45 45 H 1.08998 * 109.54496 * 176.80454 * 24 23 22 46 46 H 1.08995 * 109.50935 * 298.73296 * 26 25 24 47 47 H 1.09004 * 109.53985 * 178.62881 * 26 25 24 48 48 H 1.08992 * 109.50967 * 302.32567 * 27 22 21 49 49 H 1.08994 * 109.50565 * 62.41922 * 27 22 21 50 50 H 1.08003 * 119.94638 * 180.02562 * 28 18 17 51 51 H 1.07999 * 120.05345 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 2.1421 -0.8560 -3.5566 8 14 0.6248 1.2791 -2.6541 9 1 -0.8025 0.8722 -2.7064 10 1 0.8421 2.1735 -1.4886 11 1 0.9804 1.9988 -3.9034 12 7 2.0183 -0.6905 1.1961 13 7 2.2518 0.0299 2.3748 14 6 2.6839 -0.5817 3.4343 15 6 2.9301 0.1769 4.6748 16 6 2.7042 1.5551 4.7098 17 6 2.9306 2.2591 5.8730 18 6 3.3931 1.6023 7.0058 19 8 3.6207 2.3013 8.1485 20 6 3.3625 3.7063 8.1120 21 6 3.6750 4.3181 9.4790 22 7 5.1130 4.1957 9.7531 23 6 5.3891 4.3343 11.1904 24 6 6.8876 4.1412 11.4377 25 8 7.6207 5.0849 10.6520 26 6 7.3762 4.9776 9.2470 27 6 5.8827 5.1793 8.9775 28 6 3.6240 0.2333 6.9741 29 6 3.3955 -0.4797 5.8169 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.9110 -0.5223 -4.4375 34 1 2.1800 -1.6467 1.1722 35 1 2.8639 -1.6463 3.4075 36 1 2.3492 2.0675 3.8280 37 1 2.7528 3.3239 5.9021 38 1 3.9919 4.1718 7.3535 39 1 2.3138 3.8767 7.8684 40 1 3.3935 5.3711 9.4788 41 1 3.1121 3.7917 10.2499 42 1 5.0902 5.3280 11.5242 43 1 4.8288 3.5801 11.7431 44 1 7.1759 3.1292 11.1537 45 1 7.1062 4.2991 12.4938 46 1 7.6788 3.9899 8.8993 47 1 7.9477 5.7405 8.7182 48 1 5.6828 5.0418 7.9149 49 1 5.5911 6.1863 9.2755 50 1 3.9833 -0.2735 7.8576 51 1 3.5758 -1.5442 5.7930 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872357578.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:48 Heat of formation + Delta-G solvation = -20.744306 kcal Electronic energy + Delta-G solvation = -29001.940685 eV Core-core repulsion = 24902.194364 eV Total energy + Delta-G solvation = -4099.746321 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.09125 -40.41134 -38.83488 -37.88031 -36.76076 -35.72441 -33.75423 -32.27390 -32.04428 -31.74560 -30.85865 -28.69759 -27.35875 -27.14089 -25.02754 -24.39203 -24.16554 -22.56992 -22.04040 -21.41716 -21.21856 -19.19205 -18.99193 -17.83160 -17.61600 -17.45681 -17.14612 -16.71018 -16.45490 -16.20597 -16.04146 -15.87214 -15.67597 -15.39534 -15.08488 -14.95834 -14.82029 -14.32379 -14.27247 -14.24061 -14.05192 -13.70045 -13.53055 -13.34049 -13.17226 -12.84274 -12.78738 -12.64546 -12.59565 -12.35394 -12.15868 -12.05107 -11.74946 -11.58993 -11.51413 -11.46769 -11.29895 -10.90207 -10.83315 -10.67678 -9.90700 -9.50758 -9.37805 -8.37844 -8.24541 -6.44356 0.14494 0.49881 1.29929 1.36280 1.46690 1.75754 2.15725 2.27370 2.30825 2.70099 2.95285 2.98119 3.03662 3.78263 3.90918 3.93240 3.95658 3.99613 4.01779 4.14964 4.19403 4.27812 4.30881 4.38876 4.39973 4.46683 4.47395 4.49962 4.61192 4.62591 4.72162 4.72566 4.78078 4.78828 4.80007 4.84003 4.90156 4.95388 5.01271 5.14200 5.25164 5.39294 5.45439 5.49642 5.58202 5.81571 5.83395 5.93560 5.95717 6.09751 6.16915 6.48299 6.55853 6.63639 7.22353 7.73090 8.78640 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018983 B = 0.001568 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.659957 B =17850.141864 C =18288.127941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.281 3.719 3 H 0.026 0.974 4 C -0.537 4.537 5 H 0.041 0.959 6 C 0.023 3.977 7 N -0.939 5.939 8 Si 0.950 3.050 9 H -0.260 1.260 10 H -0.251 1.251 11 H -0.293 1.293 12 N -0.640 5.640 13 N -0.248 5.248 14 C 0.040 3.960 15 C -0.081 4.081 16 C -0.067 4.067 17 C -0.213 4.213 18 C 0.129 3.871 19 O -0.308 6.308 20 C 0.059 3.941 21 C 0.059 3.941 22 N -0.547 5.547 23 C 0.022 3.978 24 C 0.059 3.941 25 O -0.406 6.406 26 C 0.061 3.939 27 C 0.017 3.983 28 C -0.157 4.157 29 C -0.057 4.057 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.042 0.958 33 H 0.270 0.730 34 H 0.375 0.625 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.142 0.858 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.044 0.956 43 H 0.098 0.902 44 H 0.055 0.945 45 H 0.114 0.886 46 H 0.053 0.947 47 H 0.110 0.890 48 H 0.089 0.911 49 H 0.046 0.954 50 H 0.148 0.852 51 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.359 12.197 33.995 36.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.175 3.825 3 H 0.044 0.956 4 C -0.576 4.576 5 H 0.060 0.940 6 C -0.176 4.176 7 N -0.578 5.578 8 Si 0.776 3.224 9 H -0.186 1.186 10 H -0.176 1.176 11 H -0.220 1.220 12 N -0.377 5.377 13 N -0.057 5.057 14 C -0.170 4.170 15 C -0.083 4.083 16 C -0.088 4.088 17 C -0.231 4.231 18 C 0.082 3.918 19 O -0.221 6.221 20 C -0.016 4.016 21 C -0.069 4.069 22 N -0.272 5.272 23 C -0.106 4.106 24 C -0.018 4.018 25 O -0.325 6.325 26 C -0.016 4.016 27 C -0.111 4.111 28 C -0.175 4.175 29 C -0.078 4.078 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.212 0.788 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.159 0.841 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.062 0.938 43 H 0.116 0.884 44 H 0.073 0.927 45 H 0.132 0.868 46 H 0.071 0.929 47 H 0.128 0.872 48 H 0.107 0.893 49 H 0.064 0.936 50 H 0.165 0.835 51 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.361 12.769 33.351 35.977 hybrid contribution -0.579 -0.166 -0.848 1.040 sum 3.782 12.604 32.503 35.066 Atomic orbital electron populations 1.22457 0.98368 1.01202 0.99473 1.18470 0.90306 0.92791 0.80902 0.95645 1.21317 1.32246 1.13555 0.90507 0.94048 1.25684 0.97017 0.99948 0.94958 1.70005 1.46834 1.42265 0.98713 0.85839 0.79280 0.79692 0.77556 1.18614 1.17552 1.22009 1.48152 1.75166 1.07643 1.06731 1.73909 1.09264 1.28239 0.94241 1.24042 1.03460 0.98031 0.91485 1.18411 1.04672 0.93138 0.92128 1.21178 0.96413 0.93623 0.97563 1.21267 1.07684 1.01138 0.93046 1.19257 0.94870 0.92128 0.85538 1.86122 1.82372 1.21899 1.31754 1.23012 1.01046 0.78715 0.98842 1.22202 0.88240 0.99990 0.96446 1.62147 1.07373 1.50487 1.07232 1.22803 0.97846 1.01519 0.88455 1.22808 0.89729 0.92640 0.96572 1.87957 1.67709 1.58418 1.18436 1.22738 0.94709 1.02488 0.81666 1.22846 0.94777 0.93835 0.99666 1.20500 1.06082 0.91166 0.99753 1.21204 0.95547 1.00845 0.90170 0.92804 0.92961 0.93916 0.92049 0.78810 0.86141 0.86392 0.84081 0.91834 0.90266 0.90610 0.88975 0.93766 0.88402 0.92666 0.86774 0.92853 0.87181 0.89302 0.93571 0.83457 0.82752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.77 8.99 71.98 0.65 -6.12 16 2 C 0.28 13.60 2.82 44.24 0.12 13.72 16 3 H 0.03 1.31 7.20 -2.38 -0.02 1.29 16 4 C -0.54 -30.52 9.32 25.60 0.24 -30.28 16 5 H 0.04 2.58 8.03 -2.91 -0.02 2.56 16 6 C 0.02 1.32 5.45 84.65 0.46 1.79 16 7 N -0.94 -57.53 13.96 21.45 0.30 -57.24 16 8 Si 0.95 44.23 24.37 68.60 1.67 45.90 16 9 H -0.26 -11.39 6.88 99.48 0.68 -10.71 16 10 H -0.25 -11.12 6.52 99.48 0.65 -10.47 16 11 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 12 N -0.64 -27.65 6.10 -172.53 -1.05 -28.70 16 13 N -0.25 -9.57 10.61 -52.18 -0.55 -10.13 16 14 C 0.04 1.25 10.75 87.44 0.94 2.19 16 15 C -0.08 -2.17 5.87 -20.13 -0.12 -2.29 16 16 C -0.07 -1.81 9.57 22.53 0.22 -1.59 16 17 C -0.21 -4.66 9.02 22.33 0.20 -4.46 16 18 C 0.13 2.71 6.69 22.57 0.15 2.86 16 19 O -0.31 -5.80 10.08 -92.23 -0.93 -6.72 16 20 C 0.06 0.75 4.93 71.98 0.35 1.11 16 21 C 0.06 0.59 5.38 86.30 0.46 1.05 16 22 N -0.55 -6.97 4.61 -895.22 -4.12 -11.09 16 23 C 0.02 0.22 5.60 86.31 0.48 0.71 16 24 C 0.06 0.69 7.01 72.01 0.50 1.19 16 25 O -0.41 -6.57 10.83 -148.98 -1.61 -8.18 16 26 C 0.06 0.81 7.01 72.02 0.50 1.31 16 27 C 0.02 0.20 5.47 86.32 0.47 0.67 16 28 C -0.16 -3.12 9.97 22.32 0.22 -2.90 16 29 C -0.06 -1.20 9.78 22.53 0.22 -0.98 16 30 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 31 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.04 1.85 3.28 -2.39 -0.01 1.84 16 33 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 34 H 0.37 15.46 8.58 -213.31 -1.83 13.63 16 35 H 0.12 3.26 8.02 -2.91 -0.02 3.24 16 36 H 0.12 3.49 7.55 -2.91 -0.02 3.47 16 37 H 0.14 2.45 6.27 -2.91 -0.02 2.44 16 38 H 0.06 0.80 6.26 -2.39 -0.01 0.79 16 39 H 0.08 0.82 7.65 -2.39 -0.02 0.81 16 40 H 0.08 0.53 7.99 -2.39 -0.02 0.51 16 41 H 0.09 0.85 7.86 -2.38 -0.02 0.83 16 42 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.10 0.81 8.02 -2.38 -0.02 0.79 16 44 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 48 H 0.09 1.01 6.74 -2.39 -0.02 0.99 16 49 H 0.05 0.52 8.13 -2.39 -0.02 0.50 16 50 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 51 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -69.76 407.68 -1.20 -70.95 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: -0.98 Total: 27.23 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: 6.09 Total: -22.02 kcal Atomic # 7 Polarization: -101.72 SS G_CDS: -5.43 Total: -107.15 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -2.54 Total: -14.90 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.67 Total: 45.90 kcal Total: -69.76 -1.20 -70.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872357578.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.207 kcal (2) G-P(sol) polarization free energy of solvation -69.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds