Wall clock time and date at job start Wed Apr 1 2020 04:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35995 * 117.00581 * 2 1 4 4 C 1.38698 * 119.98557 * 180.02562 * 3 2 1 5 5 C 1.38106 * 120.02310 * 180.02562 * 4 3 2 6 6 C 1.38865 * 119.97786 * 359.97438 * 5 4 3 7 7 N 1.39945 * 120.01726 * 180.02562 * 6 5 4 8 8 C 1.46895 * 110.99906 * 304.29992 * 7 6 5 9 9 C 1.53239 * 109.33982 * 172.74532 * 8 7 6 10 10 N 1.47085 * 108.51819 * 53.82915 * 9 8 7 11 11 C 1.34777 * 120.87965 * 128.83687 * 10 9 8 12 12 O 1.21283 * 120.00458 * 179.97438 * 11 10 9 13 13 C 1.50700 * 120.00198 * 359.97438 * 11 10 9 14 14 N 1.46897 * 109.47626 * 180.02562 * 13 11 10 15 15 C 1.46894 * 111.00379 * 180.02562 * 14 13 11 16 16 H 1.08995 * 109.47417 * 34.99639 * 15 14 13 17 17 C 1.53005 * 109.47097 * 274.99528 * 15 14 13 18 18 C 1.50702 * 109.47520 * 154.99856 * 15 14 13 19 19 H 1.08000 * 119.99465 * 0.02562 * 18 15 14 20 20 C 1.37869 * 120.00416 * 179.97438 * 18 15 14 21 21 N 1.31520 * 120.00078 * 0.02562 * 20 18 15 22 22 Si 1.86803 * 120.00375 * 180.02562 * 20 18 15 23 23 H 1.48493 * 109.46936 * 89.99862 * 22 20 18 24 24 H 1.48503 * 109.47208 * 210.00129 * 22 20 18 25 25 H 1.48505 * 109.46595 * 330.00231 * 22 20 18 26 26 C 1.47075 * 118.24107 * 308.81625 * 10 9 8 27 27 C 1.46898 * 110.99713 * 179.97438 * 7 6 5 28 28 C 1.38857 * 119.96285 * 0.26980 * 6 5 4 29 29 C 1.38112 * 119.98059 * 359.47259 * 28 6 5 30 30 H 1.09003 * 109.46928 * 300.00416 * 1 2 3 31 31 H 1.08999 * 109.47273 * 59.99722 * 1 2 3 32 32 H 1.08997 * 109.47667 * 180.02562 * 1 2 3 33 33 H 1.08000 * 119.99085 * 0.02562 * 4 3 2 34 34 H 1.07998 * 120.01618 * 179.97438 * 5 4 3 35 35 H 1.08995 * 109.49596 * 292.70585 * 8 7 6 36 36 H 1.09002 * 109.49663 * 52.79080 * 8 7 6 37 37 H 1.09000 * 109.63193 * 294.12392 * 9 8 7 38 38 H 1.08998 * 109.79430 * 173.63261 * 9 8 7 39 39 H 1.09003 * 109.47280 * 300.00243 * 13 11 10 40 40 H 1.08996 * 109.47219 * 59.99679 * 13 11 10 41 41 H 1.00898 * 110.99758 * 303.95522 * 14 13 11 42 42 H 1.08995 * 109.47078 * 300.00320 * 17 15 14 43 43 H 1.09012 * 109.46437 * 60.00158 * 17 15 14 44 44 H 1.08994 * 109.47136 * 179.97438 * 17 15 14 45 45 H 0.96993 * 120.00422 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.62354 * 291.47592 * 26 10 9 47 47 H 1.08997 * 109.79459 * 170.98950 * 26 10 9 48 48 H 1.09003 * 109.49348 * 307.21113 * 27 7 6 49 49 H 1.08997 * 109.49342 * 67.26592 * 27 7 6 50 50 H 1.08001 * 120.01261 * 179.70124 * 28 6 5 51 51 H 1.07998 * 119.99362 * 180.24833 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4316 1.2838 -0.0005 5 6 4.0595 2.5138 0.0000 6 6 3.3036 3.6787 0.0005 7 7 3.9391 4.9256 0.0005 8 6 4.8671 5.0435 1.1331 9 6 5.6718 6.3404 0.9969 10 7 4.7306 7.4604 0.8449 11 6 4.8263 8.5552 1.6251 12 8 4.0420 9.4697 1.4857 13 6 5.9080 8.6431 2.6707 14 7 5.7988 9.9238 3.3819 15 6 6.8401 10.0452 4.4108 16 1 7.7541 9.5653 4.0611 17 6 6.3673 9.3655 5.6975 18 6 7.1103 11.5026 4.6828 19 1 6.5629 12.2627 4.1452 20 6 8.0556 11.8656 5.6184 21 7 8.7219 10.9400 6.2734 22 14 8.3901 13.6722 5.9560 23 1 7.4945 14.1470 7.0412 24 1 9.8054 13.8444 6.3712 25 1 8.1361 14.4612 4.7238 26 6 3.6825 7.3542 -0.1815 27 6 2.9561 6.0173 0.0005 28 6 1.9170 3.6057 0.0062 29 6 1.2907 2.3747 0.0003 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 4.0193 0.3777 -0.0014 34 1 5.1380 2.5698 0.0000 35 1 4.3028 5.0618 2.0654 36 1 5.5475 4.1919 1.1360 37 1 6.3156 6.2815 0.1193 38 1 6.2807 6.4923 1.8881 39 1 5.7951 7.8233 3.3801 40 1 6.8840 8.5760 2.1903 41 1 5.8354 10.6994 2.7376 42 1 5.4533 9.8454 6.0472 43 1 6.1719 8.3112 5.5008 44 1 7.1401 9.4551 6.4609 45 1 9.3872 11.1953 6.9314 46 1 4.1352 7.3927 -1.1723 47 1 2.9732 8.1744 -0.0709 48 1 2.2509 5.8718 -0.8178 49 1 2.4177 6.0219 0.9482 50 1 1.3284 4.5111 0.0115 51 1 0.2122 2.3177 0.0006 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878817205.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:24 Heat of formation + Delta-G solvation = -16.526208 kcal Electronic energy + Delta-G solvation = -30100.574355 eV Core-core repulsion = 26001.010944 eV Total energy + Delta-G solvation = -4099.563410 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.96264 -39.99429 -38.83840 -36.91464 -35.59470 -34.43873 -32.60600 -32.08085 -31.06621 -29.94441 -29.08628 -27.89323 -26.48397 -25.66517 -24.99353 -24.08031 -22.65320 -21.95494 -21.04508 -19.82400 -18.99861 -18.64311 -17.55645 -16.72311 -16.64567 -16.09085 -16.07349 -15.76243 -15.62786 -15.30468 -15.15451 -14.73022 -14.67134 -14.16318 -14.02546 -13.76526 -13.60289 -13.27209 -13.11484 -13.00332 -12.72330 -12.56476 -12.35993 -12.32957 -11.89510 -11.68554 -11.57270 -11.51663 -11.48339 -11.25410 -11.00579 -10.93810 -10.73181 -10.38030 -10.16475 -10.06411 -9.75562 -9.42928 -9.34697 -8.85263 -8.67155 -8.48231 -7.84696 -7.31382 -6.04162 -4.10010 0.97608 1.07818 2.87897 2.88726 2.94891 3.27267 3.30954 3.37045 3.41203 3.55763 4.34574 4.39900 4.46623 4.50131 4.61310 4.65487 4.73889 4.78144 4.87847 4.92749 4.98307 5.04710 5.07978 5.13283 5.19095 5.22417 5.26134 5.32409 5.41377 5.52384 5.59591 5.64438 5.69816 5.77076 5.82374 5.86767 5.91352 5.98962 6.23399 6.43215 6.64386 6.80749 6.81800 7.08482 7.09225 7.16423 7.36858 7.48727 7.77983 7.85645 8.24248 8.34884 8.40604 8.63993 8.99940 9.55995 11.02340 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024276 B = 0.001763 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.104067 B =15878.324847 C =16321.514067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.099 3.901 4 C -0.125 4.125 5 C -0.099 4.099 6 C 0.079 3.921 7 N -0.485 5.485 8 C 0.042 3.958 9 C 0.111 3.889 10 N -0.625 5.625 11 C 0.517 3.483 12 O -0.523 6.523 13 C 0.046 3.954 14 N -0.672 5.672 15 C 0.212 3.788 16 H 0.002 0.998 17 C -0.125 4.125 18 C -0.517 4.517 19 H 0.061 0.939 20 C 0.062 3.938 21 N -0.891 5.891 22 Si 0.898 3.102 23 H -0.280 1.280 24 H -0.287 1.287 25 H -0.274 1.274 26 C 0.117 3.883 27 C 0.038 3.962 28 C -0.131 4.131 29 C -0.181 4.181 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.051 0.949 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.049 0.951 41 H 0.341 0.659 42 H 0.033 0.967 43 H 0.002 0.998 44 H 0.082 0.918 45 H 0.261 0.739 46 H 0.072 0.928 47 H 0.099 0.901 48 H 0.092 0.908 49 H 0.051 0.949 50 H 0.130 0.870 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.437 -22.648 -15.049 29.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.053 3.947 4 C -0.145 4.145 5 C -0.120 4.120 6 C -0.018 4.018 7 N -0.201 5.201 8 C -0.084 4.084 9 C -0.012 4.012 10 N -0.362 5.362 11 C 0.306 3.694 12 O -0.397 6.397 13 C -0.087 4.087 14 N -0.306 5.306 15 C 0.105 3.895 16 H 0.020 0.980 17 C -0.183 4.183 18 C -0.556 4.556 19 H 0.080 0.920 20 C -0.140 4.140 21 N -0.530 5.530 22 Si 0.726 3.274 23 H -0.206 1.206 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.006 4.006 27 C -0.090 4.090 28 C -0.151 4.151 29 C -0.200 4.200 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.110 0.890 40 H 0.067 0.933 41 H 0.159 0.841 42 H 0.052 0.948 43 H 0.021 0.979 44 H 0.101 0.899 45 H 0.071 0.929 46 H 0.091 0.909 47 H 0.117 0.883 48 H 0.110 0.890 49 H 0.069 0.931 50 H 0.148 0.852 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.786 -22.432 -14.931 29.826 hybrid contribution 0.281 0.975 0.279 1.052 sum -12.505 -21.457 -14.652 28.835 Atomic orbital electron populations 1.23029 0.78539 1.03857 1.01288 1.86074 1.21233 1.26941 1.89178 1.18958 0.92357 0.84112 0.99250 1.20298 0.91317 0.98298 1.04541 1.20620 0.99892 0.90041 1.01399 1.18891 0.91794 0.89981 1.01182 1.59176 1.18629 1.00618 1.41703 1.22682 0.95506 0.99074 0.91148 1.21847 0.91506 0.84349 1.03520 1.48247 1.32448 1.18521 1.36975 1.21125 0.86080 0.80978 0.81200 1.90668 1.42808 1.37397 1.68835 1.21830 0.94443 0.97968 0.94484 1.60521 1.53040 1.00683 1.16320 1.19164 0.86460 0.96219 0.87704 0.98005 1.21734 1.01020 0.94774 1.00790 1.21249 1.20579 0.91379 1.22374 0.92037 1.24908 0.95674 0.97714 0.95688 1.69889 1.25004 1.32310 1.25779 0.86490 0.77257 0.84963 0.78658 1.20596 1.21285 1.19885 1.21601 0.90995 0.96484 0.91526 1.22695 0.93959 0.90374 1.01989 1.21137 0.93581 0.97850 1.02579 1.21096 0.99912 0.91993 1.06987 0.92731 0.92743 0.88316 0.84976 0.84837 0.93053 0.88756 0.90408 0.88455 0.89048 0.93337 0.84053 0.94807 0.97874 0.89933 0.92916 0.90945 0.88298 0.88985 0.93070 0.85216 0.85499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.80 10.50 -19.73 -0.21 -3.01 16 3 C 0.10 0.90 6.69 -39.24 -0.26 0.64 16 4 C -0.13 -1.08 9.98 -39.46 -0.39 -1.48 16 5 C -0.10 -0.84 9.14 -39.40 -0.36 -1.20 16 6 C 0.08 0.73 5.65 -83.69 -0.47 0.25 16 7 N -0.49 -4.48 4.68 -170.77 -0.80 -5.28 16 8 C 0.04 0.37 5.43 -3.70 -0.02 0.35 16 9 C 0.11 1.08 6.51 -3.60 -0.02 1.06 16 10 N -0.62 -7.91 3.01 -172.46 -0.52 -8.43 16 11 C 0.52 8.66 7.75 -10.99 -0.09 8.57 16 12 O -0.52 -10.66 15.66 5.55 0.09 -10.57 16 13 C 0.05 0.80 4.33 -4.98 -0.02 0.78 16 14 N -0.67 -14.99 5.93 -109.22 -0.65 -15.64 16 15 C 0.21 5.35 2.60 -68.86 -0.18 5.17 16 16 H 0.00 0.06 7.80 -51.93 -0.40 -0.34 16 17 C -0.12 -3.09 9.19 37.16 0.34 -2.75 16 18 C -0.52 -14.33 8.59 -34.44 -0.30 -14.62 16 19 H 0.06 1.71 7.62 -52.49 -0.40 1.31 16 20 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 21 N -0.89 -25.20 11.32 55.43 0.63 -24.57 16 22 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.12 1.28 6.59 -3.61 -0.02 1.26 16 27 C 0.04 0.35 4.30 -3.70 -0.02 0.33 16 28 C -0.13 -1.15 8.82 -39.40 -0.35 -1.49 16 29 C -0.18 -1.51 9.03 -39.45 -0.36 -1.86 16 30 H 0.05 0.24 7.66 -51.93 -0.40 -0.16 16 31 H 0.05 0.23 7.66 -51.93 -0.40 -0.17 16 32 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.13 0.92 7.14 -52.49 -0.37 0.54 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.66 6.66 -51.93 -0.35 0.31 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.10 0.91 6.02 -51.93 -0.31 0.60 16 39 H 0.09 1.52 6.96 -51.93 -0.36 1.16 16 40 H 0.05 0.80 7.91 -51.93 -0.41 0.39 16 41 H 0.34 7.83 7.92 -39.29 -0.31 7.51 16 42 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.00 0.05 7.45 -51.92 -0.39 -0.34 16 44 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 45 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.10 1.21 7.07 -51.93 -0.37 0.84 16 48 H 0.09 0.71 6.90 -51.93 -0.36 0.35 16 49 H 0.05 0.52 7.81 -51.93 -0.41 0.11 16 50 H 0.13 0.99 5.80 -52.49 -0.30 0.69 16 51 H 0.13 0.81 6.29 -52.49 -0.33 0.48 16 LS Contribution 399.48 15.07 6.02 6.02 Total: -1.00 -32.71 399.48 -9.93 -42.64 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -7.86 Total: 4.69 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -1.62 Total: -2.24 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -1.34 Total: -53.92 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.12 Total: -13.58 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.71 -9.93 -42.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878817205.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.117 kcal (2) G-P(sol) polarization free energy of solvation -32.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds