Wall clock time and date at job start Wed Apr 1 2020 04:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47198 * 2 1 4 4 C 1.50704 * 109.46862 * 239.99881 * 2 1 3 5 5 H 1.08001 * 120.00204 * 245.69753 * 4 2 1 6 6 C 1.37880 * 119.99593 * 65.70267 * 4 2 1 7 7 N 1.31522 * 119.99278 * 197.36357 * 6 4 2 8 8 Si 1.86797 * 120.00326 * 17.64014 * 6 4 2 9 9 H 1.48498 * 109.47287 * 179.72402 * 8 6 4 10 10 H 1.48497 * 109.46841 * 299.72330 * 8 6 4 11 11 H 1.48500 * 109.47188 * 59.72340 * 8 6 4 12 12 N 1.46898 * 109.47302 * 120.00373 * 2 1 3 13 13 C 1.46900 * 110.99649 * 274.99696 * 12 2 1 14 14 C 1.52999 * 109.46955 * 179.97438 * 13 12 2 15 15 C 1.50706 * 109.47361 * 179.97438 * 14 13 12 16 16 O 1.21297 * 119.99764 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00233 * 180.02562 * 15 14 13 18 18 C 1.40153 * 120.00220 * 185.30228 * 17 15 14 19 19 C 1.38848 * 120.00050 * 212.71699 * 18 17 15 20 20 C 1.38064 * 120.00358 * 179.72297 * 19 18 17 21 21 C 1.38885 * 119.99484 * 0.53148 * 20 19 18 22 22 N 1.39890 * 120.00146 * 179.76721 * 21 20 19 23 23 C 1.47013 * 110.99963 * 123.61230 * 22 21 20 24 24 C 1.53103 * 109.25992 * 177.60482 * 23 22 21 25 25 O 1.43025 * 109.25446 * 56.84993 * 24 23 22 26 26 C 1.43016 * 113.73610 * 301.32510 * 25 24 23 27 27 C 1.47011 * 111.00229 * 359.97438 * 22 21 20 28 28 C 1.38888 * 119.99315 * 359.74283 * 21 20 19 29 29 C 1.38055 * 119.99224 * 0.02562 * 28 21 20 30 30 H 1.08999 * 109.46663 * 295.70252 * 1 2 3 31 31 H 1.08997 * 109.46765 * 55.69946 * 1 2 3 32 32 H 1.08996 * 109.47309 * 175.70242 * 1 2 3 33 33 H 0.96994 * 119.99969 * 355.22455 * 7 6 4 34 34 H 1.00893 * 111.00383 * 151.04621 * 12 2 1 35 35 H 1.08998 * 109.47432 * 299.99876 * 13 12 2 36 36 H 1.09006 * 109.47194 * 60.00119 * 13 12 2 37 37 H 1.09003 * 109.47911 * 300.00000 * 14 13 12 38 38 H 1.09000 * 109.46975 * 60.00591 * 14 13 12 39 39 H 0.96998 * 120.00106 * 5.31087 * 17 15 14 40 40 H 1.08003 * 119.99680 * 359.97438 * 19 18 17 41 41 H 1.07997 * 119.99703 * 180.29558 * 20 19 18 42 42 H 1.09002 * 109.51033 * 297.53720 * 23 22 21 43 43 H 1.08998 * 109.51008 * 57.67354 * 23 22 21 44 44 H 1.08998 * 109.50889 * 296.91632 * 24 23 22 45 45 H 1.08997 * 109.50855 * 176.78032 * 24 23 22 46 46 H 1.08996 * 109.51239 * 298.74244 * 26 25 24 47 47 H 1.09000 * 109.54113 * 178.62484 * 26 25 24 48 48 H 1.09000 * 109.50700 * 302.32808 * 27 22 21 49 49 H 1.08997 * 109.50842 * 62.45855 * 27 22 21 50 50 H 1.07993 * 119.99951 * 180.02562 * 28 21 20 51 51 H 1.08003 * 119.99567 * 179.97438 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5752 -1.6391 -1.1341 6 6 1.7988 -0.1748 -2.4793 7 7 1.9200 -0.9277 -3.5509 8 14 1.3179 1.6221 -2.6499 9 1 1.1313 1.9505 -4.0861 10 1 0.0495 1.8667 -1.9174 11 1 2.3905 2.4777 -2.0819 12 7 2.0198 -0.6926 1.1994 13 6 2.0826 0.2225 2.3468 14 6 2.5952 -0.5333 3.5744 15 6 2.6603 0.4056 4.7514 16 8 2.3288 1.5651 4.6213 17 7 3.0868 -0.0430 5.9485 18 6 3.0427 0.7983 7.0686 19 6 4.0088 0.6863 8.0595 20 6 3.9687 1.5189 9.1601 21 6 2.9556 2.4611 9.2813 22 7 2.9121 3.3016 10.3988 23 6 2.9154 4.7152 9.9952 24 6 2.8068 5.5967 11.2424 25 8 3.8805 5.2857 12.1347 26 6 3.9070 3.9170 12.5485 27 6 4.0267 3.0186 11.3146 28 6 1.9861 2.5692 8.2928 29 6 2.0293 1.7397 7.1901 30 1 -0.3632 0.4457 0.9260 31 1 -0.3633 0.5791 -0.8489 32 1 -0.3634 -1.0247 -0.0770 33 1 2.2404 -1.8396 -3.4691 34 1 2.9173 -1.1205 1.0287 35 1 2.7590 1.0461 2.1182 36 1 1.0872 0.6163 2.5525 37 1 1.9185 -1.3567 3.8030 38 1 3.5905 -0.9272 3.3690 39 1 3.4245 -0.9482 6.0350 40 1 4.7940 -0.0495 7.9674 41 1 4.7230 1.4349 9.9285 42 1 3.8430 4.9415 9.4694 43 1 2.0674 4.9083 9.3382 44 1 1.8549 5.4090 11.7390 45 1 2.8664 6.6458 10.9529 46 1 2.9870 3.6804 13.0831 47 1 4.7619 3.7509 13.2040 48 1 3.9899 1.9731 11.6207 49 1 4.9720 3.2176 10.8099 50 1 1.1985 3.3021 8.3867 51 1 1.2751 1.8234 6.4215 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878817817.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:37 Heat of formation + Delta-G solvation = -38.435398 kcal Electronic energy + Delta-G solvation = -29409.667141 eV Core-core repulsion = 25309.153677 eV Total energy + Delta-G solvation = -4100.513464 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.08122 -40.25589 -38.62320 -36.53435 -36.03814 -34.24934 -33.02970 -32.22773 -31.22809 -30.97098 -29.67356 -28.02605 -26.54491 -25.09668 -24.78834 -23.27689 -22.52589 -21.95414 -20.85993 -20.19749 -19.66161 -18.34100 -17.65562 -17.39824 -17.11661 -16.61011 -16.05265 -15.89491 -15.70888 -15.47340 -15.24105 -14.84045 -14.53358 -14.37667 -14.19959 -13.84125 -13.73605 -13.59280 -13.18504 -12.92452 -12.78871 -12.68813 -12.45247 -12.20132 -11.94502 -11.86809 -11.75367 -11.56154 -11.37726 -11.17165 -10.92386 -10.77637 -10.74615 -10.39440 -10.22429 -9.94298 -9.91372 -9.64634 -9.51876 -9.20173 -8.87037 -8.23395 -7.85683 -7.54901 -6.47336 -4.08595 0.96362 1.10510 2.46818 2.83551 3.11869 3.33068 3.39197 3.43484 3.55940 3.60965 4.27428 4.32058 4.42819 4.47853 4.54709 4.57532 4.62932 4.70871 4.73378 4.93706 5.02357 5.05278 5.07617 5.13449 5.19031 5.20941 5.22923 5.26512 5.32099 5.39103 5.55394 5.62525 5.70097 5.73451 5.83203 6.08127 6.19047 6.22566 6.33387 6.42979 6.51123 6.54281 6.59286 6.70263 6.82459 6.90279 6.95900 7.17927 7.48865 7.72249 7.98762 8.08913 8.37619 8.46998 8.93572 9.60038 10.92809 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024279 B = 0.001596 C = 0.001532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.990812 B =17541.369508 C =18267.522448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.189 3.811 3 H -0.005 1.005 4 C -0.605 4.605 5 H 0.060 0.940 6 C 0.032 3.968 7 N -0.905 5.905 8 Si 1.045 2.955 9 H -0.285 1.285 10 H -0.272 1.272 11 H -0.285 1.285 12 N -0.682 5.682 13 C 0.071 3.929 14 C -0.136 4.136 15 C 0.515 3.485 16 O -0.518 6.518 17 N -0.679 5.679 18 C 0.131 3.869 19 C -0.123 4.123 20 C -0.148 4.148 21 C 0.086 3.914 22 N -0.486 5.486 23 C 0.018 3.982 24 C 0.062 3.938 25 O -0.385 6.385 26 C 0.062 3.938 27 C 0.012 3.988 28 C -0.115 4.115 29 C -0.096 4.096 30 H 0.020 0.980 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.267 0.733 34 H 0.335 0.665 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.411 0.589 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.053 0.947 43 H 0.094 0.906 44 H 0.062 0.938 45 H 0.103 0.897 46 H 0.061 0.939 47 H 0.102 0.898 48 H 0.093 0.907 49 H 0.055 0.945 50 H 0.127 0.873 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.558 6.648 34.346 35.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.080 3.920 3 H 0.012 0.988 4 C -0.644 4.644 5 H 0.078 0.922 6 C -0.173 4.173 7 N -0.539 5.539 8 Si 0.874 3.126 9 H -0.211 1.211 10 H -0.198 1.198 11 H -0.212 1.212 12 N -0.313 5.313 13 C -0.059 4.059 14 C -0.176 4.176 15 C 0.304 3.696 16 O -0.392 6.392 17 N -0.325 5.325 18 C 0.037 3.963 19 C -0.144 4.144 20 C -0.170 4.170 21 C -0.011 4.011 22 N -0.203 5.203 23 C -0.108 4.108 24 C -0.015 4.015 25 O -0.303 6.303 26 C -0.015 4.015 27 C -0.115 4.115 28 C -0.136 4.136 29 C -0.117 4.117 30 H 0.039 0.961 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.152 0.848 35 H 0.047 0.953 36 H 0.091 0.909 37 H 0.123 0.877 38 H 0.111 0.889 39 H 0.247 0.753 40 H 0.144 0.856 41 H 0.146 0.854 42 H 0.072 0.928 43 H 0.112 0.888 44 H 0.080 0.920 45 H 0.121 0.879 46 H 0.080 0.920 47 H 0.120 0.880 48 H 0.112 0.888 49 H 0.073 0.927 50 H 0.145 0.855 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.913 8.468 33.576 34.750 hybrid contribution 1.945 -1.400 0.468 2.442 sum 4.858 7.068 34.045 35.109 Atomic orbital electron populations 1.22139 0.98278 1.00923 0.98387 1.19411 0.92211 0.92442 0.87968 0.98774 1.22082 1.40904 1.10101 0.91272 0.92189 1.25712 0.94528 1.05024 0.92056 1.70862 1.41756 1.09804 1.31444 0.84037 0.77238 0.75332 0.75977 1.21103 1.19845 1.21153 1.60584 1.32459 1.32804 1.05445 1.21679 1.00810 0.93737 0.89676 1.21685 1.04155 0.98790 0.92964 1.21133 0.75731 0.89158 0.83603 1.90721 1.46301 1.18271 1.83898 1.43710 1.65074 1.16378 1.07311 1.17746 0.95459 0.94970 0.88158 1.20742 0.97790 1.01163 0.94686 1.21031 0.98209 0.98631 0.99086 1.18867 0.95374 0.96173 0.90686 1.59456 1.42864 1.04043 1.13913 1.22970 1.02987 0.86384 0.98424 1.22729 0.90634 0.99078 0.89022 1.88013 1.50745 1.26700 1.64833 1.22712 1.02812 0.81042 0.94901 1.22979 0.92494 1.01504 0.94522 1.20651 0.98654 1.00985 0.93289 1.21078 0.97469 0.95455 0.97688 0.96053 0.93074 0.93111 0.92242 0.84779 0.95276 0.90939 0.87740 0.88859 0.75341 0.85592 0.85356 0.92826 0.88760 0.91960 0.87913 0.92036 0.88020 0.88829 0.92657 0.85473 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.11 37.16 0.34 -2.88 16 2 C 0.19 4.57 2.19 -68.86 -0.15 4.42 16 3 H -0.01 -0.13 6.45 -51.93 -0.33 -0.47 16 4 C -0.61 -16.98 8.82 -34.44 -0.30 -17.28 16 5 H 0.06 1.79 7.92 -52.49 -0.42 1.37 16 6 C 0.03 0.94 5.34 -17.82 -0.10 0.84 16 7 N -0.90 -27.75 13.70 55.43 0.76 -26.99 16 8 Si 1.05 25.56 26.42 -169.99 -4.49 21.07 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.27 -6.20 5.51 56.52 0.31 -5.89 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 N -0.68 -13.89 6.30 -107.95 -0.68 -14.57 16 13 C 0.07 1.24 4.77 -3.82 -0.02 1.22 16 14 C -0.14 -1.68 5.96 -27.88 -0.17 -1.85 16 15 C 0.52 6.66 7.57 -10.99 -0.08 6.58 16 16 O -0.52 -8.64 13.65 5.54 0.08 -8.56 16 17 N -0.68 -6.68 5.35 -9.81 -0.05 -6.73 16 18 C 0.13 1.41 6.29 -83.60 -0.53 0.89 16 19 C -0.12 -1.08 9.95 -39.42 -0.39 -1.47 16 20 C -0.15 -1.26 8.81 -39.41 -0.35 -1.61 16 21 C 0.09 0.81 5.64 -83.70 -0.47 0.33 16 22 N -0.49 -3.91 4.78 -170.75 -0.82 -4.72 16 23 C 0.02 0.13 5.41 -3.71 -0.02 0.11 16 24 C 0.06 0.39 7.01 37.21 0.26 0.65 16 25 O -0.38 -3.04 10.83 -35.23 -0.38 -3.42 16 26 C 0.06 0.36 7.01 37.21 0.26 0.62 16 27 C 0.01 0.08 4.33 -3.71 -0.02 0.06 16 28 C -0.12 -1.18 9.20 -39.41 -0.36 -1.54 16 29 C -0.10 -1.13 8.65 -39.42 -0.34 -1.47 16 30 H 0.02 0.43 7.37 -51.93 -0.38 0.05 16 31 H 0.05 1.20 4.80 -51.93 -0.25 0.95 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.27 8.16 8.73 -40.82 -0.36 7.80 16 34 H 0.33 6.66 8.26 -39.30 -0.32 6.34 16 35 H 0.03 0.55 8.01 -51.93 -0.42 0.13 16 36 H 0.07 1.33 7.33 -51.93 -0.38 0.95 16 37 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.41 2.65 8.82 -40.82 -0.36 2.29 16 40 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 41 H 0.13 0.83 5.81 -52.49 -0.30 0.52 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.62 6.86 -51.93 -0.36 0.26 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.09 0.48 7.23 -51.93 -0.38 0.11 16 49 H 0.06 0.37 7.53 -51.93 -0.39 -0.02 16 50 H 0.13 1.14 7.20 -52.49 -0.38 0.76 16 51 H 0.14 1.84 6.39 -52.48 -0.34 1.50 16 LS Contribution 398.71 15.07 6.01 6.01 Total: -1.00 -34.12 398.71 -10.06 -44.18 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -8.05 Total: 6.12 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -2.43 Total: -12.38 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.79 Total: -53.02 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.31 Total: -11.98 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -4.49 Total: 21.07 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.12 -10.06 -44.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878817817.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.748 kcal (2) G-P(sol) polarization free energy of solvation -34.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds