Wall clock time and date at job start Wed Apr 1 2020 04:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47198 * 2 1 4 4 C 1.50704 * 109.46862 * 239.99881 * 2 1 3 5 5 H 1.08001 * 120.00204 * 245.69753 * 4 2 1 6 6 C 1.37880 * 119.99593 * 65.70267 * 4 2 1 7 7 N 1.31522 * 119.99278 * 197.36357 * 6 4 2 8 8 Si 1.86797 * 120.00326 * 17.64014 * 6 4 2 9 9 H 1.48498 * 109.47287 * 179.72402 * 8 6 4 10 10 H 1.48497 * 109.46841 * 299.72330 * 8 6 4 11 11 H 1.48500 * 109.47188 * 59.72340 * 8 6 4 12 12 N 1.46898 * 109.47302 * 120.00373 * 2 1 3 13 13 C 1.46900 * 110.99649 * 274.99696 * 12 2 1 14 14 C 1.52999 * 109.46955 * 179.97438 * 13 12 2 15 15 C 1.50706 * 109.47361 * 179.97438 * 14 13 12 16 16 O 1.21297 * 119.99764 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00233 * 180.02562 * 15 14 13 18 18 C 1.40153 * 120.00220 * 185.30228 * 17 15 14 19 19 C 1.38848 * 120.00050 * 212.71699 * 18 17 15 20 20 C 1.38064 * 120.00358 * 179.72297 * 19 18 17 21 21 C 1.38885 * 119.99484 * 0.53148 * 20 19 18 22 22 N 1.39890 * 120.00146 * 179.76721 * 21 20 19 23 23 C 1.47013 * 110.99963 * 123.61230 * 22 21 20 24 24 C 1.53103 * 109.25992 * 177.60482 * 23 22 21 25 25 O 1.43025 * 109.25446 * 56.84993 * 24 23 22 26 26 C 1.43016 * 113.73610 * 301.32510 * 25 24 23 27 27 C 1.47011 * 111.00229 * 359.97438 * 22 21 20 28 28 C 1.38888 * 119.99315 * 359.74283 * 21 20 19 29 29 C 1.38055 * 119.99224 * 0.02562 * 28 21 20 30 30 H 1.08999 * 109.46663 * 295.70252 * 1 2 3 31 31 H 1.08997 * 109.46765 * 55.69946 * 1 2 3 32 32 H 1.08996 * 109.47309 * 175.70242 * 1 2 3 33 33 H 0.96994 * 119.99969 * 355.22455 * 7 6 4 34 34 H 1.00893 * 111.00383 * 151.04621 * 12 2 1 35 35 H 1.08998 * 109.47432 * 299.99876 * 13 12 2 36 36 H 1.09006 * 109.47194 * 60.00119 * 13 12 2 37 37 H 1.09003 * 109.47911 * 300.00000 * 14 13 12 38 38 H 1.09000 * 109.46975 * 60.00591 * 14 13 12 39 39 H 0.96998 * 120.00106 * 5.31087 * 17 15 14 40 40 H 1.08003 * 119.99680 * 359.97438 * 19 18 17 41 41 H 1.07997 * 119.99703 * 180.29558 * 20 19 18 42 42 H 1.09002 * 109.51033 * 297.53720 * 23 22 21 43 43 H 1.08998 * 109.51008 * 57.67354 * 23 22 21 44 44 H 1.08998 * 109.50889 * 296.91632 * 24 23 22 45 45 H 1.08997 * 109.50855 * 176.78032 * 24 23 22 46 46 H 1.08996 * 109.51239 * 298.74244 * 26 25 24 47 47 H 1.09000 * 109.54113 * 178.62484 * 26 25 24 48 48 H 1.09000 * 109.50700 * 302.32808 * 27 22 21 49 49 H 1.08997 * 109.50842 * 62.45855 * 27 22 21 50 50 H 1.07993 * 119.99951 * 180.02562 * 28 21 20 51 51 H 1.08003 * 119.99567 * 179.97438 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5752 -1.6391 -1.1341 6 6 1.7988 -0.1748 -2.4793 7 7 1.9200 -0.9277 -3.5509 8 14 1.3179 1.6221 -2.6499 9 1 1.1313 1.9505 -4.0861 10 1 0.0495 1.8667 -1.9174 11 1 2.3905 2.4777 -2.0819 12 7 2.0198 -0.6926 1.1994 13 6 2.0826 0.2225 2.3468 14 6 2.5952 -0.5333 3.5744 15 6 2.6603 0.4056 4.7514 16 8 2.3288 1.5651 4.6213 17 7 3.0868 -0.0430 5.9485 18 6 3.0427 0.7983 7.0686 19 6 4.0088 0.6863 8.0595 20 6 3.9687 1.5189 9.1601 21 6 2.9556 2.4611 9.2813 22 7 2.9121 3.3016 10.3988 23 6 2.9154 4.7152 9.9952 24 6 2.8068 5.5967 11.2424 25 8 3.8805 5.2857 12.1347 26 6 3.9070 3.9170 12.5485 27 6 4.0267 3.0186 11.3146 28 6 1.9861 2.5692 8.2928 29 6 2.0293 1.7397 7.1901 30 1 -0.3632 0.4457 0.9260 31 1 -0.3633 0.5791 -0.8489 32 1 -0.3634 -1.0247 -0.0770 33 1 2.2404 -1.8396 -3.4691 34 1 2.9173 -1.1205 1.0287 35 1 2.7590 1.0461 2.1182 36 1 1.0872 0.6163 2.5525 37 1 1.9185 -1.3567 3.8030 38 1 3.5905 -0.9272 3.3690 39 1 3.4245 -0.9482 6.0350 40 1 4.7940 -0.0495 7.9674 41 1 4.7230 1.4349 9.9285 42 1 3.8430 4.9415 9.4694 43 1 2.0674 4.9083 9.3382 44 1 1.8549 5.4090 11.7390 45 1 2.8664 6.6458 10.9529 46 1 2.9870 3.6804 13.0831 47 1 4.7619 3.7509 13.2040 48 1 3.9899 1.9731 11.6207 49 1 4.9720 3.2176 10.8099 50 1 1.1985 3.3021 8.3867 51 1 1.2751 1.8234 6.4215 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878817817.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:35 Heat of formation + Delta-G solvation = -64.426015 kcal Electronic energy + Delta-G solvation = -29410.794178 eV Core-core repulsion = 25309.153677 eV Total energy + Delta-G solvation = -4101.640502 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.82069 -41.03961 -39.35650 -37.99941 -36.99646 -35.08734 -34.91201 -32.88952 -32.78142 -31.61350 -30.59707 -29.35092 -27.33378 -26.76915 -25.65395 -24.40709 -23.33600 -22.76593 -21.64262 -21.59227 -21.00630 -19.66896 -19.02914 -18.28667 -18.04282 -17.26153 -17.11062 -16.55087 -16.47648 -16.30129 -16.02546 -15.95183 -15.69323 -15.45062 -15.30830 -14.95756 -14.94769 -14.62151 -14.45345 -14.20871 -13.82764 -13.69515 -13.48726 -13.34672 -13.22872 -13.09907 -12.75656 -12.48235 -12.43636 -12.37285 -12.22700 -12.21772 -11.80843 -11.65243 -11.57044 -11.50665 -10.99022 -10.96025 -10.78285 -10.42174 -10.18207 -9.95859 -9.26048 -8.75293 -8.58061 -6.38505 0.19843 0.37021 1.43835 1.49256 1.52244 1.69165 1.97347 2.44824 2.50052 2.82603 2.90474 3.04180 3.42330 3.71790 3.78481 3.80612 3.92134 3.94309 4.03288 4.08800 4.16217 4.23539 4.24540 4.32864 4.45882 4.49001 4.53905 4.55351 4.62945 4.65156 4.73252 4.75154 4.84017 4.89642 4.90639 4.92277 4.96102 4.99536 5.02879 5.14311 5.17127 5.33172 5.45659 5.57909 5.71995 5.76105 5.89637 6.01387 6.10784 6.20738 6.24623 6.40151 6.62211 6.77829 7.10372 7.38363 8.62723 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024279 B = 0.001596 C = 0.001532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.990812 B =17541.369508 C =18267.522448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.187 3.813 3 H -0.009 1.009 4 C -0.605 4.605 5 H 0.030 0.970 6 C -0.016 4.016 7 N -0.935 5.935 8 Si 1.080 2.920 9 H -0.286 1.286 10 H -0.244 1.244 11 H -0.272 1.272 12 N -0.679 5.679 13 C 0.075 3.925 14 C -0.123 4.123 15 C 0.517 3.483 16 O -0.562 6.562 17 N -0.660 5.660 18 C 0.111 3.889 19 C -0.114 4.114 20 C -0.149 4.149 21 C 0.085 3.915 22 N -0.492 5.492 23 C 0.019 3.981 24 C 0.064 3.936 25 O -0.404 6.404 26 C 0.060 3.940 27 C 0.011 3.989 28 C -0.126 4.126 29 C -0.116 4.116 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.040 0.960 33 H 0.254 0.746 34 H 0.337 0.663 35 H 0.013 0.987 36 H 0.061 0.939 37 H 0.124 0.876 38 H 0.118 0.882 39 H 0.429 0.571 40 H 0.155 0.845 41 H 0.153 0.847 42 H 0.042 0.958 43 H 0.095 0.905 44 H 0.066 0.934 45 H 0.116 0.884 46 H 0.064 0.936 47 H 0.121 0.879 48 H 0.108 0.892 49 H 0.054 0.946 50 H 0.130 0.870 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.233 6.948 37.175 38.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.078 3.922 3 H 0.008 0.992 4 C -0.644 4.644 5 H 0.048 0.952 6 C -0.215 4.215 7 N -0.571 5.571 8 Si 0.902 3.098 9 H -0.212 1.212 10 H -0.169 1.169 11 H -0.197 1.197 12 N -0.310 5.310 13 C -0.056 4.056 14 C -0.163 4.163 15 C 0.306 3.694 16 O -0.440 6.440 17 N -0.307 5.307 18 C 0.016 3.984 19 C -0.135 4.135 20 C -0.170 4.170 21 C -0.013 4.013 22 N -0.209 5.209 23 C -0.107 4.107 24 C -0.013 4.013 25 O -0.323 6.323 26 C -0.016 4.016 27 C -0.116 4.116 28 C -0.147 4.147 29 C -0.137 4.137 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.155 0.845 35 H 0.032 0.968 36 H 0.080 0.920 37 H 0.142 0.858 38 H 0.136 0.864 39 H 0.268 0.732 40 H 0.172 0.828 41 H 0.171 0.829 42 H 0.061 0.939 43 H 0.114 0.886 44 H 0.085 0.915 45 H 0.134 0.866 46 H 0.082 0.918 47 H 0.139 0.861 48 H 0.126 0.874 49 H 0.072 0.928 50 H 0.148 0.852 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.607 8.719 36.470 37.671 hybrid contribution 1.789 -1.544 -0.274 2.379 sum 5.396 7.175 36.196 37.293 Atomic orbital electron populations 1.22029 0.97154 1.00522 0.99487 1.19304 0.93075 0.91874 0.87992 0.99168 1.22301 1.39899 1.09001 0.93152 0.95172 1.27024 0.94312 1.08227 0.91949 1.70982 1.44132 1.09494 1.32484 0.83612 0.78728 0.71077 0.76371 1.21198 1.16907 1.19705 1.60511 1.32634 1.32961 1.04870 1.21631 1.00168 0.93380 0.90373 1.21532 1.05791 0.98341 0.90606 1.21133 0.75359 0.88462 0.84447 1.90716 1.48558 1.20079 1.84654 1.43457 1.63943 1.17106 1.06188 1.17908 0.96141 0.95432 0.88921 1.21032 0.97510 1.01235 0.93712 1.21362 0.98234 0.97889 0.99520 1.19031 0.95140 0.96475 0.90638 1.59458 1.43713 1.04132 1.13580 1.22981 1.02483 0.86276 0.98960 1.22802 0.90524 0.99613 0.88367 1.87988 1.51295 1.27913 1.65072 1.22869 1.03880 0.80020 0.94867 1.23078 0.91698 1.02517 0.94271 1.20713 0.99396 1.01111 0.93470 1.21012 0.97939 0.96867 0.97850 0.93607 0.93503 0.94035 0.93692 0.84543 0.96846 0.92021 0.85789 0.86369 0.73214 0.82773 0.82935 0.93918 0.88622 0.91529 0.86594 0.91782 0.86073 0.87395 0.92824 0.85166 0.86642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.00 9.11 71.98 0.66 -5.34 16 2 C 0.19 8.95 2.19 44.17 0.10 9.04 16 3 H -0.01 -0.45 6.45 -2.39 -0.02 -0.46 16 4 C -0.61 -34.30 8.82 25.60 0.23 -34.07 16 5 H 0.03 1.84 7.92 -2.91 -0.02 1.82 16 6 C -0.02 -0.93 5.34 84.65 0.45 -0.48 16 7 N -0.94 -58.52 13.70 21.45 0.29 -58.22 16 8 Si 1.08 50.88 26.42 68.60 1.81 52.70 16 9 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 10 H -0.24 -10.39 5.51 99.48 0.55 -9.84 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 12 N -0.68 -27.01 6.30 -495.44 -3.12 -30.13 16 13 C 0.07 2.50 4.77 86.30 0.41 2.91 16 14 C -0.12 -2.80 5.96 29.85 0.18 -2.62 16 15 C 0.52 12.76 7.57 87.66 0.66 13.43 16 16 O -0.56 -18.87 13.65 -3.08 -0.04 -18.91 16 17 N -0.66 -11.76 5.35 -303.35 -1.62 -13.38 16 18 C 0.11 2.23 6.29 38.10 0.24 2.47 16 19 C -0.11 -1.71 9.95 22.37 0.22 -1.49 16 20 C -0.15 -2.17 8.81 22.38 0.20 -1.97 16 21 C 0.08 1.47 5.64 38.17 0.22 1.69 16 22 N -0.49 -7.21 4.78 -694.13 -3.32 -10.53 16 23 C 0.02 0.26 5.41 86.32 0.47 0.72 16 24 C 0.06 0.72 7.01 72.02 0.50 1.23 16 25 O -0.40 -5.78 10.83 -148.98 -1.61 -7.39 16 26 C 0.06 0.57 7.01 72.02 0.50 1.08 16 27 C 0.01 0.12 4.33 86.32 0.37 0.49 16 28 C -0.13 -2.58 9.20 22.38 0.21 -2.37 16 29 C -0.12 -2.75 8.65 22.37 0.19 -2.56 16 30 H 0.04 1.80 7.37 -2.39 -0.02 1.78 16 31 H 0.05 2.11 4.80 -2.39 -0.01 2.10 16 32 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.25 16.05 8.73 -92.71 -0.81 15.24 16 34 H 0.34 13.16 8.26 -89.70 -0.74 12.42 16 35 H 0.01 0.49 8.01 -2.39 -0.02 0.47 16 36 H 0.06 2.21 7.33 -2.38 -0.02 2.19 16 37 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.43 4.26 8.82 -92.71 -0.82 3.45 16 40 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 41 H 0.15 1.44 5.81 -2.91 -0.02 1.42 16 42 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.10 1.24 6.86 -2.39 -0.02 1.22 16 44 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.11 0.79 7.23 -2.39 -0.02 0.78 16 49 H 0.05 0.59 7.53 -2.39 -0.02 0.57 16 50 H 0.13 2.41 7.20 -2.91 -0.02 2.39 16 51 H 0.12 3.24 6.39 -2.91 -0.02 3.22 16 Total: -1.00 -75.37 398.71 -2.60 -77.96 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: -0.80 Total: 25.74 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 5.81 Total: -17.84 kcal Atomic # 7 Polarization: -104.49 SS G_CDS: -7.77 Total: -112.26 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -1.66 Total: -26.30 kcal Atomic # 14 Polarization: 50.88 SS G_CDS: 1.81 Total: 52.70 kcal Total: -75.37 -2.60 -77.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878817817.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.537 kcal (2) G-P(sol) polarization free energy of solvation -75.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds