Wall clock time and date at job start Wed Apr 1 2020 04:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47229 * 2 1 4 4 C 1.53000 * 109.47388 * 120.00345 * 2 1 3 5 5 N 1.46494 * 109.47143 * 175.00014 * 4 2 1 6 6 C 1.34779 * 119.99880 * 180.02562 * 5 4 2 7 7 O 1.21591 * 120.00225 * 359.97438 * 6 5 4 8 8 C 1.47521 * 119.99554 * 179.97438 * 6 5 4 9 9 C 1.39682 * 120.20202 * 355.01807 * 8 6 5 10 10 C 1.37804 * 119.91779 * 179.97438 * 9 8 6 11 11 C 1.38558 * 120.33119 * 359.97438 * 10 9 8 12 12 C 1.38021 * 120.40721 * 0.02562 * 11 10 9 13 13 C 1.38846 * 120.06979 * 0.02562 * 12 11 10 14 14 N 1.39287 * 120.16554 * 179.97438 * 13 12 11 15 15 C 1.34773 * 119.99791 * 34.93626 * 14 13 12 16 16 O 1.21285 * 120.00204 * 5.27215 * 15 14 13 17 17 C 1.50704 * 120.00277 * 185.27185 * 15 14 13 18 18 N 1.46894 * 109.47332 * 179.97438 * 17 15 14 19 19 C 1.46903 * 111.00032 * 179.97438 * 18 17 15 20 20 H 1.09002 * 109.47076 * 325.00253 * 19 18 17 21 21 C 1.53004 * 109.47034 * 84.99939 * 19 18 17 22 22 C 1.50691 * 109.47293 * 205.00185 * 19 18 17 23 23 H 1.08000 * 120.00469 * 359.97438 * 22 19 18 24 24 C 1.37883 * 119.99766 * 179.97438 * 22 19 18 25 25 N 1.31504 * 120.00406 * 0.02562 * 24 22 19 26 26 Si 1.86805 * 119.99636 * 179.97438 * 24 22 19 27 27 H 1.48496 * 109.47247 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.46787 * 120.00107 * 26 24 22 29 29 H 1.48503 * 109.47073 * 239.99900 * 26 24 22 30 30 H 1.09002 * 109.46431 * 299.99835 * 1 2 3 31 31 H 1.08991 * 109.47317 * 59.99670 * 1 2 3 32 32 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.46611 * 240.00492 * 2 1 3 34 34 H 1.08990 * 109.47396 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47078 * 300.00692 * 3 2 1 36 36 H 1.09010 * 109.46863 * 60.00176 * 3 2 1 37 37 H 1.09004 * 109.46732 * 54.99859 * 4 2 1 38 38 H 1.09000 * 109.46950 * 295.00113 * 4 2 1 39 39 H 0.97000 * 120.00125 * 359.97438 * 5 4 2 40 40 H 1.07995 * 120.04078 * 359.95229 * 9 8 6 41 41 H 1.08001 * 119.83192 * 180.02562 * 10 9 8 42 42 H 1.08005 * 119.79165 * 180.02562 * 11 10 9 43 43 H 1.07998 * 119.96290 * 179.73029 * 12 11 10 44 44 H 0.97001 * 120.00296 * 214.93638 * 14 13 12 45 45 H 1.09001 * 109.46650 * 300.00624 * 17 15 14 46 46 H 1.09008 * 109.46809 * 59.99787 * 17 15 14 47 47 H 1.00896 * 110.99972 * 303.95636 * 18 17 15 48 48 H 1.09002 * 109.46933 * 60.00226 * 21 19 18 49 49 H 1.09002 * 109.47097 * 179.97438 * 21 19 18 50 50 H 1.09000 * 109.47128 * 300.00363 * 21 19 18 51 51 H 0.96997 * 120.00520 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1904 6 6 4.1731 -1.4293 2.1905 7 8 3.5685 -1.8855 3.1417 8 6 5.6433 -1.5355 2.1310 9 6 6.3333 -1.1070 0.9947 10 6 7.7068 -1.2085 0.9456 11 6 8.4084 -1.7336 2.0189 12 6 7.7402 -2.1611 3.1484 13 6 6.3566 -2.0676 3.2154 14 7 5.6802 -2.4990 4.3541 15 6 6.2400 -2.3427 5.5700 16 8 7.2874 -1.7417 5.6828 17 6 5.5646 -2.9147 6.7898 18 7 6.3681 -2.6122 7.9817 19 6 5.7385 -3.1552 9.1928 20 1 4.6544 -3.0905 9.0990 21 6 6.1487 -4.6187 9.3683 22 6 6.1873 -2.3604 10.3918 23 1 6.8721 -1.5347 10.2669 24 6 5.7236 -2.6874 11.6485 25 7 4.8902 -3.6931 11.8008 26 14 6.2806 -1.7026 13.1349 27 1 7.2123 -0.6318 12.6985 28 1 5.0990 -1.0914 13.7947 29 1 6.9728 -2.6014 14.0932 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8901 37 1 1.6055 -1.7199 1.2950 38 1 1.7518 -0.1584 2.1369 39 1 3.9824 -0.4628 0.4315 40 1 5.7912 -0.6970 0.1555 41 1 8.2390 -0.8764 0.0665 42 1 9.4848 -1.8087 1.9713 43 1 8.2939 -2.5732 3.9790 44 1 4.8063 -2.9118 4.2719 45 1 4.5739 -2.4730 6.8971 46 1 5.4706 -3.9952 6.6799 47 1 7.3111 -2.9558 7.8788 48 1 7.2327 -4.6835 9.4621 49 1 5.6819 -5.0216 10.2672 50 1 5.8240 -5.1936 8.5010 51 1 4.5643 -3.9234 12.6849 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878818058.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:42 Heat of formation + Delta-G solvation = -47.913538 kcal Electronic energy + Delta-G solvation = -30032.136828 eV Core-core repulsion = 25931.212361 eV Total energy + Delta-G solvation = -4100.924467 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.99397 -39.58134 -38.26244 -37.02273 -35.76270 -34.68957 -33.63993 -32.46702 -31.36034 -30.22858 -28.79486 -27.67957 -26.77419 -25.39848 -24.92873 -23.84959 -22.52963 -21.14761 -20.66993 -20.21366 -20.03697 -18.22471 -17.48142 -16.94137 -16.57670 -16.07187 -15.95193 -15.46965 -15.35050 -14.84385 -14.82446 -14.63322 -14.49309 -14.15626 -13.87254 -13.66219 -13.39261 -13.29105 -13.05238 -12.82684 -12.62802 -12.55700 -12.46485 -12.27131 -11.78854 -11.63131 -11.61594 -11.52218 -11.42597 -11.22085 -10.92048 -10.76383 -10.52294 -10.50218 -10.12290 -10.06501 -9.93629 -9.55870 -9.47257 -9.13962 -8.94621 -8.33053 -8.21076 -7.23862 -5.95226 -3.97571 0.61760 1.13621 2.64507 2.82821 2.86385 3.17288 3.35856 3.43235 3.50458 3.70761 4.21876 4.37331 4.42960 4.48752 4.49991 4.54422 4.78352 4.94959 5.02569 5.09963 5.14642 5.20877 5.22897 5.32414 5.36110 5.36389 5.38880 5.44949 5.46933 5.61748 5.65134 5.75683 5.81301 5.85127 5.93587 5.96008 6.03393 6.12659 6.25979 6.39333 6.68066 6.83495 6.85135 7.07951 7.12308 7.30020 7.56946 7.75778 7.91501 7.93226 8.26963 8.36746 8.54835 8.62289 9.10603 9.67522 11.12160 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011279 B = 0.002216 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.853794 B =12631.139758 C =14285.873962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C -0.151 4.151 4 C 0.122 3.878 5 N -0.726 5.726 6 C 0.566 3.434 7 O -0.538 6.538 8 C -0.182 4.182 9 C -0.067 4.067 10 C -0.153 4.153 11 C -0.069 4.069 12 C -0.134 4.134 13 C 0.227 3.773 14 N -0.670 5.670 15 C 0.514 3.486 16 O -0.506 6.506 17 C 0.046 3.954 18 N -0.667 5.667 19 C 0.211 3.789 20 H 0.036 0.964 21 C -0.171 4.171 22 C -0.491 4.491 23 H 0.065 0.935 24 C 0.054 3.946 25 N -0.899 5.899 26 Si 0.898 3.102 27 H -0.272 1.272 28 H -0.285 1.285 29 H -0.286 1.286 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.399 0.601 40 H 0.124 0.876 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.142 0.858 44 H 0.424 0.576 45 H 0.099 0.901 46 H 0.053 0.947 47 H 0.335 0.665 48 H 0.029 0.971 49 H 0.091 0.909 50 H 0.005 0.995 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.398 4.421 -30.946 31.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.208 4.208 4 C -0.001 4.001 5 N -0.378 5.378 6 C 0.355 3.645 7 O -0.417 6.417 8 C -0.188 4.188 9 C -0.086 4.086 10 C -0.172 4.172 11 C -0.088 4.088 12 C -0.155 4.155 13 C 0.128 3.872 14 N -0.321 5.321 15 C 0.302 3.698 16 O -0.379 6.379 17 C -0.087 4.087 18 N -0.299 5.299 19 C 0.104 3.896 20 H 0.054 0.946 21 C -0.230 4.230 22 C -0.530 4.530 23 H 0.083 0.917 24 C -0.146 4.146 25 N -0.539 5.539 26 Si 0.727 3.273 27 H -0.197 1.197 28 H -0.212 1.212 29 H -0.212 1.212 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.235 0.765 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.160 0.840 44 H 0.267 0.733 45 H 0.117 0.883 46 H 0.070 0.930 47 H 0.153 0.847 48 H 0.048 0.952 49 H 0.110 0.890 50 H 0.024 0.976 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.537 5.035 -29.826 30.455 hybrid contribution 0.163 -0.479 0.248 0.563 sum -3.374 4.556 -29.579 30.117 Atomic orbital electron populations 1.21766 0.93828 1.02338 1.02425 1.21364 0.96943 0.96715 0.97698 1.21891 1.01004 0.95542 1.02382 1.21486 0.79240 1.01020 0.98397 1.45850 1.07930 1.60324 1.23727 1.18128 0.86765 0.77549 0.82046 1.90636 1.69773 1.48357 1.32899 1.19651 0.92719 1.08820 0.97626 1.21010 0.94653 0.97063 0.95909 1.20987 0.93782 1.02956 0.99468 1.21246 1.00299 0.95063 0.92184 1.21243 0.92577 1.02302 0.99355 1.17752 0.91583 0.91920 0.85967 1.44085 1.23625 1.60178 1.04237 1.21396 0.85373 0.78913 0.84104 1.90682 1.22838 1.38630 1.85726 1.21793 0.99180 0.98383 0.89385 1.60582 1.04668 1.64301 1.00306 1.19246 0.94691 0.89826 0.85860 0.94638 1.22459 0.99550 0.99953 1.01038 1.21185 1.27043 1.14508 0.90298 0.91697 1.24950 0.95308 0.95419 0.98966 1.69884 1.32909 1.28250 1.22836 0.86425 0.78424 0.80033 0.82444 1.19676 1.21167 1.21226 0.92128 0.92104 0.92235 0.90559 0.92671 0.92278 0.92164 0.91163 0.91055 0.76506 0.85773 0.85451 0.85201 0.84025 0.73311 0.88258 0.92962 0.84729 0.95155 0.89044 0.97626 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.19 37.16 0.34 -0.33 16 2 C -0.11 -0.54 2.96 -90.62 -0.27 -0.80 16 3 C -0.15 -0.73 9.07 37.16 0.34 -0.39 16 4 C 0.12 0.92 5.06 -4.05 -0.02 0.90 16 5 N -0.73 -5.86 5.23 -61.36 -0.32 -6.18 16 6 C 0.57 6.68 7.75 -12.48 -0.10 6.59 16 7 O -0.54 -8.01 13.89 5.29 0.07 -7.93 16 8 C -0.18 -2.10 5.89 -104.81 -0.62 -2.72 16 9 C -0.07 -0.56 9.52 -39.20 -0.37 -0.93 16 10 C -0.15 -1.24 10.02 -39.62 -0.40 -1.63 16 11 C -0.07 -0.68 10.03 -39.54 -0.40 -1.07 16 12 C -0.13 -1.75 8.63 -39.44 -0.34 -2.09 16 13 C 0.23 3.15 6.25 -83.48 -0.52 2.63 16 14 N -0.67 -10.16 4.69 -9.68 -0.05 -10.20 16 15 C 0.51 9.17 7.59 -10.99 -0.08 9.09 16 16 O -0.51 -10.35 14.00 5.55 0.08 -10.27 16 17 C 0.05 0.85 5.97 -4.98 -0.03 0.82 16 18 N -0.67 -15.16 5.85 -109.22 -0.64 -15.80 16 19 C 0.21 5.43 2.57 -68.87 -0.18 5.25 16 20 H 0.04 0.98 7.80 -51.93 -0.40 0.58 16 21 C -0.17 -4.14 8.94 37.16 0.33 -3.81 16 22 C -0.49 -14.03 8.84 -34.44 -0.30 -14.34 16 23 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 24 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 25 N -0.90 -26.03 11.32 55.43 0.63 -25.40 16 26 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 27 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.25 7.18 -51.93 -0.37 -0.12 16 35 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.40 2.16 5.71 -40.82 -0.23 1.92 16 40 H 0.12 0.60 6.44 -52.49 -0.34 0.26 16 41 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 42 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 43 H 0.14 2.04 6.54 -52.49 -0.34 1.70 16 44 H 0.42 6.12 6.31 -40.82 -0.26 5.86 16 45 H 0.10 1.85 8.06 -51.93 -0.42 1.43 16 46 H 0.05 0.90 7.44 -51.92 -0.39 0.51 16 47 H 0.33 7.49 8.17 -39.29 -0.32 7.17 16 48 H 0.03 0.71 8.13 -51.93 -0.42 0.28 16 49 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 50 H 0.00 0.10 7.45 -51.93 -0.39 -0.28 16 51 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 412.11 15.07 6.21 6.21 Total: -1.00 -33.53 412.11 -9.72 -43.25 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -7.97 Total: 10.71 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -2.71 Total: -1.42 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -0.38 Total: -57.59 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: 0.15 Total: -18.21 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.53 -9.72 -43.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878818058.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.664 kcal (2) G-P(sol) polarization free energy of solvation -33.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds