Wall clock time and date at job start Wed Apr 1 2020 04:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47229 * 2 1 4 4 C 1.53000 * 109.47388 * 120.00345 * 2 1 3 5 5 N 1.46494 * 109.47143 * 175.00014 * 4 2 1 6 6 C 1.34779 * 119.99880 * 180.02562 * 5 4 2 7 7 O 1.21591 * 120.00225 * 359.97438 * 6 5 4 8 8 C 1.47521 * 119.99554 * 179.97438 * 6 5 4 9 9 C 1.39682 * 120.20202 * 355.01807 * 8 6 5 10 10 C 1.37804 * 119.91779 * 179.97438 * 9 8 6 11 11 C 1.38558 * 120.33119 * 359.97438 * 10 9 8 12 12 C 1.38021 * 120.40721 * 0.02562 * 11 10 9 13 13 C 1.38846 * 120.06979 * 0.02562 * 12 11 10 14 14 N 1.39287 * 120.16554 * 179.97438 * 13 12 11 15 15 C 1.34773 * 119.99791 * 34.93626 * 14 13 12 16 16 O 1.21285 * 120.00204 * 5.27215 * 15 14 13 17 17 C 1.50704 * 120.00277 * 185.27185 * 15 14 13 18 18 N 1.46894 * 109.47332 * 179.97438 * 17 15 14 19 19 C 1.46903 * 111.00032 * 179.97438 * 18 17 15 20 20 H 1.09002 * 109.47076 * 325.00253 * 19 18 17 21 21 C 1.53004 * 109.47034 * 84.99939 * 19 18 17 22 22 C 1.50691 * 109.47293 * 205.00185 * 19 18 17 23 23 H 1.08000 * 120.00469 * 359.97438 * 22 19 18 24 24 C 1.37883 * 119.99766 * 179.97438 * 22 19 18 25 25 N 1.31504 * 120.00406 * 0.02562 * 24 22 19 26 26 Si 1.86805 * 119.99636 * 179.97438 * 24 22 19 27 27 H 1.48496 * 109.47247 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.46787 * 120.00107 * 26 24 22 29 29 H 1.48503 * 109.47073 * 239.99900 * 26 24 22 30 30 H 1.09002 * 109.46431 * 299.99835 * 1 2 3 31 31 H 1.08991 * 109.47317 * 59.99670 * 1 2 3 32 32 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.46611 * 240.00492 * 2 1 3 34 34 H 1.08990 * 109.47396 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47078 * 300.00692 * 3 2 1 36 36 H 1.09010 * 109.46863 * 60.00176 * 3 2 1 37 37 H 1.09004 * 109.46732 * 54.99859 * 4 2 1 38 38 H 1.09000 * 109.46950 * 295.00113 * 4 2 1 39 39 H 0.97000 * 120.00125 * 359.97438 * 5 4 2 40 40 H 1.07995 * 120.04078 * 359.95229 * 9 8 6 41 41 H 1.08001 * 119.83192 * 180.02562 * 10 9 8 42 42 H 1.08005 * 119.79165 * 180.02562 * 11 10 9 43 43 H 1.07998 * 119.96290 * 179.73029 * 12 11 10 44 44 H 0.97001 * 120.00296 * 214.93638 * 14 13 12 45 45 H 1.09001 * 109.46650 * 300.00624 * 17 15 14 46 46 H 1.09008 * 109.46809 * 59.99787 * 17 15 14 47 47 H 1.00896 * 110.99972 * 303.95636 * 18 17 15 48 48 H 1.09002 * 109.46933 * 60.00226 * 21 19 18 49 49 H 1.09002 * 109.47097 * 179.97438 * 21 19 18 50 50 H 1.09000 * 109.47128 * 300.00363 * 21 19 18 51 51 H 0.96997 * 120.00520 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1904 6 6 4.1731 -1.4293 2.1905 7 8 3.5685 -1.8855 3.1417 8 6 5.6433 -1.5355 2.1310 9 6 6.3333 -1.1070 0.9947 10 6 7.7068 -1.2085 0.9456 11 6 8.4084 -1.7336 2.0189 12 6 7.7402 -2.1611 3.1484 13 6 6.3566 -2.0676 3.2154 14 7 5.6802 -2.4990 4.3541 15 6 6.2400 -2.3427 5.5700 16 8 7.2874 -1.7417 5.6828 17 6 5.5646 -2.9147 6.7898 18 7 6.3681 -2.6122 7.9817 19 6 5.7385 -3.1552 9.1928 20 1 4.6544 -3.0905 9.0990 21 6 6.1487 -4.6187 9.3683 22 6 6.1873 -2.3604 10.3918 23 1 6.8721 -1.5347 10.2669 24 6 5.7236 -2.6874 11.6485 25 7 4.8902 -3.6931 11.8008 26 14 6.2806 -1.7026 13.1349 27 1 7.2123 -0.6318 12.6985 28 1 5.0990 -1.0914 13.7947 29 1 6.9728 -2.6014 14.0932 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8901 37 1 1.6055 -1.7199 1.2950 38 1 1.7518 -0.1584 2.1369 39 1 3.9824 -0.4628 0.4315 40 1 5.7912 -0.6970 0.1555 41 1 8.2390 -0.8764 0.0665 42 1 9.4848 -1.8087 1.9713 43 1 8.2939 -2.5732 3.9790 44 1 4.8063 -2.9118 4.2719 45 1 4.5739 -2.4730 6.8971 46 1 5.4706 -3.9952 6.6799 47 1 7.3111 -2.9558 7.8788 48 1 7.2327 -4.6835 9.4621 49 1 5.6819 -5.0216 10.2672 50 1 5.8240 -5.1936 8.5010 51 1 4.5643 -3.9234 12.6849 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878818058.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:41 Heat of formation + Delta-G solvation = -70.957441 kcal Electronic energy + Delta-G solvation = -30033.136086 eV Core-core repulsion = 25931.212361 eV Total energy + Delta-G solvation = -4101.923726 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.00603 -40.69190 -39.21781 -37.69163 -37.58131 -35.83971 -34.51946 -34.39206 -32.13871 -31.57538 -30.30928 -28.05368 -27.54444 -27.27861 -26.67330 -24.65211 -23.57943 -22.17111 -21.97603 -21.27640 -21.23356 -19.11767 -18.80183 -18.18902 -17.85210 -17.33516 -16.95221 -16.66896 -16.56090 -16.17758 -16.02457 -15.54906 -15.50414 -15.18273 -15.08745 -14.72476 -14.53235 -14.38886 -14.30343 -13.95369 -13.65993 -13.58932 -13.31456 -13.28978 -13.02550 -12.90982 -12.89132 -12.74119 -12.54407 -12.43033 -12.19108 -12.04482 -11.97985 -11.86297 -11.64645 -11.56981 -11.23314 -11.01084 -10.77205 -10.50291 -10.29825 -9.92869 -9.20773 -9.05223 -8.11921 -6.22327 -0.23624 0.28850 1.40936 1.42285 1.50918 1.55687 1.79176 1.97014 2.08396 2.44019 2.85291 3.16354 3.59473 3.64383 3.68712 3.75215 3.83984 3.94589 4.10782 4.11595 4.31013 4.36842 4.37838 4.42720 4.47043 4.58630 4.67151 4.71327 4.76596 4.83390 4.86235 4.88747 4.99096 5.03606 5.04142 5.12344 5.22356 5.26163 5.29664 5.33816 5.39899 5.44162 5.47994 5.50359 5.67544 5.77239 5.93253 6.20120 6.31149 6.45815 6.57044 6.69582 6.89646 7.01817 7.15759 7.46936 8.94081 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011279 B = 0.002216 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.853794 B =12631.139758 C =14285.873962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.151 4.151 4 C 0.121 3.879 5 N -0.706 5.706 6 C 0.559 3.441 7 O -0.579 6.579 8 C -0.189 4.189 9 C -0.056 4.056 10 C -0.137 4.137 11 C -0.068 4.068 12 C -0.157 4.157 13 C 0.186 3.814 14 N -0.660 5.660 15 C 0.518 3.482 16 O -0.539 6.539 17 C 0.047 3.953 18 N -0.677 5.677 19 C 0.216 3.784 20 H 0.011 0.989 21 C -0.157 4.157 22 C -0.516 4.516 23 H 0.049 0.951 24 C 0.010 3.990 25 N -0.920 5.920 26 Si 0.962 3.038 27 H -0.273 1.273 28 H -0.279 1.279 29 H -0.277 1.277 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.046 0.954 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.415 0.585 40 H 0.167 0.833 41 H 0.170 0.830 42 H 0.153 0.847 43 H 0.117 0.883 44 H 0.425 0.575 45 H 0.097 0.903 46 H 0.072 0.928 47 H 0.336 0.664 48 H 0.031 0.969 49 H 0.067 0.933 50 H 0.030 0.970 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.871 5.479 -34.263 34.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.209 4.209 4 C -0.003 4.003 5 N -0.358 5.358 6 C 0.348 3.652 7 O -0.460 6.460 8 C -0.194 4.194 9 C -0.075 4.075 10 C -0.156 4.156 11 C -0.087 4.087 12 C -0.177 4.177 13 C 0.088 3.912 14 N -0.311 5.311 15 C 0.307 3.693 16 O -0.415 6.415 17 C -0.085 4.085 18 N -0.309 5.309 19 C 0.108 3.892 20 H 0.029 0.971 21 C -0.217 4.217 22 C -0.555 4.555 23 H 0.068 0.932 24 C -0.188 4.188 25 N -0.560 5.560 26 Si 0.788 3.212 27 H -0.198 1.198 28 H -0.205 1.205 29 H -0.202 1.202 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.254 0.746 40 H 0.185 0.815 41 H 0.188 0.812 42 H 0.171 0.829 43 H 0.135 0.865 44 H 0.268 0.732 45 H 0.115 0.885 46 H 0.089 0.911 47 H 0.154 0.846 48 H 0.050 0.950 49 H 0.085 0.915 50 H 0.049 0.951 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.023 6.105 -33.234 33.925 hybrid contribution -0.021 -0.778 1.087 1.337 sum -3.043 5.326 -32.147 32.728 Atomic orbital electron populations 1.21784 0.93659 1.02408 1.02626 1.21318 0.96994 0.96665 0.96709 1.21907 1.01380 0.95221 1.02371 1.21541 0.78810 1.00720 0.99195 1.45713 1.08177 1.58783 1.23140 1.18340 0.87094 0.77555 0.82222 1.90611 1.70498 1.50282 1.34635 1.19795 0.92628 1.08994 0.98030 1.21508 0.95146 0.95235 0.95583 1.21492 0.93726 1.00522 0.99811 1.21592 1.01629 0.94022 0.91456 1.21209 0.92399 1.03919 1.00217 1.18069 0.92230 0.94532 0.86326 1.43828 1.23412 1.59829 1.04027 1.21066 0.84893 0.78650 0.84698 1.90659 1.24171 1.40428 1.86271 1.21769 0.98482 0.99663 0.88610 1.60399 1.04990 1.64599 1.00879 1.19022 0.93223 0.90499 0.86452 0.97088 1.22257 0.99327 0.99178 1.00936 1.21419 1.27357 1.14790 0.91944 0.93232 1.25694 0.95276 0.96361 1.01506 1.69990 1.33313 1.29066 1.23610 0.85446 0.78069 0.78650 0.79069 1.19794 1.20503 1.20235 0.92989 0.90856 0.92278 0.88786 0.92070 0.90998 0.93516 0.91927 0.93007 0.74622 0.81547 0.81219 0.82908 0.86522 0.73151 0.88474 0.91057 0.84637 0.95004 0.91461 0.95073 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.19 71.98 0.66 -0.49 16 2 C -0.10 -0.76 2.96 -10.79 -0.03 -0.80 16 3 C -0.15 -1.11 9.07 71.98 0.65 -0.46 16 4 C 0.12 1.72 5.06 86.38 0.44 2.16 16 5 N -0.71 -10.14 5.23 -466.29 -2.44 -12.57 16 6 C 0.56 12.87 7.75 86.69 0.67 13.54 16 7 O -0.58 -17.77 13.89 -4.00 -0.06 -17.83 16 8 C -0.19 -4.13 5.89 -19.99 -0.12 -4.25 16 9 C -0.06 -0.72 9.52 22.52 0.21 -0.50 16 10 C -0.14 -1.62 10.02 22.24 0.22 -1.40 16 11 C -0.07 -1.19 10.03 22.29 0.22 -0.97 16 12 C -0.16 -4.14 8.63 22.36 0.19 -3.95 16 13 C 0.19 5.25 6.25 38.60 0.24 5.49 16 14 N -0.66 -21.00 4.69 -302.94 -1.42 -22.42 16 15 C 0.52 19.45 7.59 87.66 0.67 20.12 16 16 O -0.54 -23.20 14.00 -3.05 -0.04 -23.24 16 17 C 0.05 1.84 5.97 85.56 0.51 2.35 16 18 N -0.68 -31.92 5.85 -499.46 -2.92 -34.84 16 19 C 0.22 11.47 2.57 44.17 0.11 11.58 16 20 H 0.01 0.64 7.80 -2.39 -0.02 0.62 16 21 C -0.16 -7.77 8.94 71.98 0.64 -7.12 16 22 C -0.52 -30.28 8.84 25.60 0.23 -30.05 16 23 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 24 C 0.01 0.57 5.30 84.66 0.45 1.02 16 25 N -0.92 -53.99 11.32 21.45 0.24 -53.74 16 26 Si 0.96 45.77 29.54 68.60 2.03 47.80 16 27 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 28 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 29 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.06 0.37 7.18 -2.39 -0.02 0.35 16 35 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 37 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.41 3.03 5.71 -92.71 -0.53 2.50 16 40 H 0.17 0.66 6.44 -2.91 -0.02 0.64 16 41 H 0.17 0.67 8.06 -2.91 -0.02 0.64 16 42 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 43 H 0.12 3.60 6.54 -2.91 -0.02 3.58 16 44 H 0.42 12.99 6.31 -92.71 -0.59 12.40 16 45 H 0.10 3.80 8.06 -2.39 -0.02 3.78 16 46 H 0.07 2.50 7.44 -2.38 -0.02 2.48 16 47 H 0.34 15.57 8.17 -89.70 -0.73 14.84 16 48 H 0.03 1.51 8.13 -2.39 -0.02 1.49 16 49 H 0.07 3.66 6.07 -2.39 -0.01 3.65 16 50 H 0.03 1.32 7.45 -2.39 -0.02 1.31 16 51 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -76.16 412.11 0.48 -75.68 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: -0.88 Total: 34.90 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 5.98 Total: 6.27 kcal Atomic # 7 Polarization: -117.04 SS G_CDS: -6.54 Total: -123.58 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: -0.10 Total: -41.07 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -76.16 0.48 -75.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878818058.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.721 kcal (2) G-P(sol) polarization free energy of solvation -76.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds