Wall clock time and date at job start Wed Apr 1 2020 04:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47105 * 2 1 4 4 N 1.46905 * 109.46496 * 119.99717 * 2 1 3 5 5 C 1.46900 * 110.99863 * 276.27473 * 4 2 1 6 6 H 1.09001 * 109.46940 * 35.44991 * 5 4 2 7 7 C 1.53001 * 109.46758 * 155.44642 * 5 4 2 8 8 C 1.50696 * 109.47224 * 275.44179 * 5 4 2 9 9 H 1.07998 * 120.00096 * 0.02562 * 8 5 4 10 10 C 1.37885 * 119.99862 * 179.97438 * 8 5 4 11 11 N 1.31507 * 119.99807 * 0.02562 * 10 8 5 12 12 Si 1.86798 * 119.99878 * 180.02562 * 10 8 5 13 13 H 1.48506 * 109.47382 * 0.02562 * 12 10 8 14 14 H 1.48494 * 109.47317 * 120.00161 * 12 10 8 15 15 H 1.48507 * 109.47045 * 240.00435 * 12 10 8 16 16 C 1.50696 * 109.47281 * 239.99621 * 2 1 3 17 17 O 1.21302 * 120.00095 * 240.00381 * 16 2 1 18 18 N 1.34778 * 120.00190 * 60.00687 * 16 2 1 19 19 C 1.40144 * 120.00136 * 185.14557 * 18 16 2 20 20 C 1.38860 * 119.99641 * 32.92877 * 19 18 16 21 21 C 1.38064 * 120.00226 * 179.97438 * 20 19 18 22 22 C 1.38885 * 119.99663 * 0.02562 * 21 20 19 23 23 N 1.39894 * 120.00297 * 179.97438 * 22 21 20 24 24 C 1.47014 * 111.00069 * 180.02562 * 23 22 21 25 25 C 1.53089 * 109.25920 * 177.60974 * 24 23 22 26 26 O 1.43021 * 109.25715 * 56.84851 * 25 24 23 27 27 C 1.43009 * 113.74247 * 301.33236 * 26 25 24 28 28 C 1.47014 * 110.99851 * 56.37259 * 23 22 21 29 29 C 1.38885 * 119.98920 * 0.26060 * 22 21 20 30 30 C 1.38057 * 119.99970 * 359.48593 * 29 22 21 31 31 H 1.09001 * 109.46684 * 55.29783 * 1 2 3 32 32 H 1.09000 * 109.47162 * 175.28969 * 1 2 3 33 33 H 1.09000 * 109.47657 * 295.29690 * 1 2 3 34 34 H 1.00901 * 110.99333 * 152.32206 * 4 2 1 35 35 H 1.09003 * 109.47261 * 306.72820 * 7 5 4 36 36 H 1.09000 * 109.47443 * 66.73062 * 7 5 4 37 37 H 1.09004 * 109.47174 * 186.73120 * 7 5 4 38 38 H 0.97002 * 120.00044 * 179.97438 * 11 10 8 39 39 H 0.96999 * 119.99933 * 5.13828 * 18 16 2 40 40 H 1.08005 * 119.99659 * 0.02562 * 20 19 18 41 41 H 1.07997 * 119.99718 * 180.02562 * 21 20 19 42 42 H 1.09001 * 109.50070 * 57.67444 * 24 23 22 43 43 H 1.09003 * 109.50721 * 297.54887 * 24 23 22 44 44 H 1.09002 * 109.50670 * 176.78485 * 25 24 23 45 45 H 1.09004 * 109.51000 * 296.87726 * 25 24 23 46 46 H 1.08991 * 109.50720 * 178.60271 * 27 26 25 47 47 H 1.09006 * 109.50520 * 298.73196 * 27 26 25 48 48 H 1.08999 * 109.51063 * 62.44969 * 28 23 22 49 49 H 1.09006 * 109.54034 * 302.34540 * 28 23 22 50 50 H 1.08006 * 119.99997 * 179.72280 * 29 22 21 51 51 H 1.08000 * 119.99872 * 180.27826 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0195 -0.6925 1.1996 5 6 2.0536 0.2150 2.3542 6 1 1.2121 0.9055 2.2985 7 6 1.9603 -0.5996 3.6460 8 6 3.3439 0.9934 2.3434 9 1 4.0662 0.8306 1.5572 10 6 3.6018 1.9143 3.3368 11 7 2.7220 2.1128 4.2938 12 14 5.2009 2.8797 3.3230 13 1 6.0140 2.4741 2.1484 14 1 4.9018 4.3318 3.2396 15 1 5.9581 2.6010 4.5697 16 6 2.0323 -0.7105 -1.2304 17 8 2.7297 -1.6967 -1.1190 18 7 1.7069 -0.2500 -2.4545 19 6 2.0826 -0.9700 -3.5967 20 6 2.1441 -2.3566 -3.5543 21 6 2.5137 -3.0660 -4.6796 22 6 2.8246 -2.3926 -5.8539 23 7 3.1997 -3.1113 -6.9940 24 6 3.4838 -2.2064 -8.1173 25 6 3.9467 -3.0283 -9.3231 26 8 2.9445 -3.9957 -9.6473 27 6 2.6433 -4.8939 -8.5760 28 6 2.1675 -4.0913 -7.3623 29 6 2.7688 -1.0055 -5.8943 30 6 2.3941 -0.2967 -4.7704 31 1 -0.3633 0.5851 -0.8449 32 1 -0.3633 -1.0242 -0.0844 33 1 -0.3634 0.4391 0.9291 34 1 2.9265 -1.1029 1.0352 35 1 1.0885 -1.2524 3.6017 36 1 2.8607 -1.2031 3.7608 37 1 1.8651 0.0764 4.4958 38 1 2.9036 2.7604 4.9928 39 1 1.2125 0.5796 -2.5450 40 1 1.9019 -2.8801 -2.6412 41 1 2.5611 -4.1444 -4.6467 42 1 4.2687 -1.5063 -7.8310 43 1 2.5805 -1.6548 -8.3779 44 1 4.1038 -2.3673 -10.1755 45 1 4.8796 -3.5372 -9.0803 46 1 1.8578 -5.5821 -8.8879 47 1 3.5379 -5.4576 -8.3112 48 1 1.2429 -3.5702 -7.6106 49 1 1.9910 -4.7668 -6.5252 50 1 3.0149 -0.4815 -6.8061 51 1 2.3464 0.7818 -4.8032 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878818210.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:02 Heat of formation + Delta-G solvation = -35.530559 kcal Electronic energy + Delta-G solvation = -30240.109494 eV Core-core repulsion = 26139.721993 eV Total energy + Delta-G solvation = -4100.387501 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.92003 -40.09655 -38.50008 -36.40801 -35.66811 -34.07700 -32.91738 -32.11273 -30.82196 -30.63595 -29.31306 -27.21765 -26.59015 -25.07034 -24.98034 -23.78289 -22.52124 -21.94831 -20.78014 -20.01466 -19.57081 -18.18261 -17.50087 -16.96296 -16.59270 -16.29311 -15.82006 -15.73772 -15.38537 -15.26518 -14.96895 -14.72736 -14.69564 -14.17584 -14.13118 -13.75111 -13.54987 -13.00390 -12.89723 -12.67483 -12.53387 -12.39801 -12.13798 -11.97882 -11.87572 -11.84640 -11.35030 -11.26464 -11.12241 -11.07839 -11.00486 -10.81046 -10.72173 -10.31529 -10.14095 -10.10081 -9.99983 -9.41701 -9.30036 -9.11298 -9.00132 -8.45037 -7.67045 -7.38315 -6.04668 -4.16526 1.15716 1.28529 2.79941 3.13095 3.22806 3.23523 3.32388 3.36700 3.41740 3.74379 4.36760 4.36867 4.44110 4.55316 4.66805 4.78112 4.79819 4.81837 4.95435 5.04758 5.14651 5.15895 5.23953 5.24289 5.27485 5.31183 5.36482 5.46983 5.51094 5.60875 5.79310 5.82703 5.90109 5.98524 6.03844 6.27529 6.34222 6.42635 6.56544 6.59190 6.65364 6.74205 6.87242 7.08158 7.13001 7.26233 7.39296 7.52240 7.72175 8.02196 8.11095 8.23172 8.32362 8.60366 8.95806 9.51650 10.96910 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021078 B = 0.001926 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.095799 B =14535.364180 C =15142.876208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.074 3.926 3 H 0.076 0.924 4 N -0.674 5.674 5 C 0.207 3.793 6 H 0.035 0.965 7 C -0.122 4.122 8 C -0.548 4.548 9 H 0.053 0.947 10 C 0.068 3.932 11 N -0.885 5.885 12 Si 0.888 3.112 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.283 1.283 16 C 0.517 3.483 17 O -0.512 6.512 18 N -0.679 5.679 19 C 0.137 3.863 20 C -0.097 4.097 21 C -0.115 4.115 22 C 0.082 3.918 23 N -0.486 5.486 24 C 0.013 3.987 25 C 0.062 3.938 26 O -0.385 6.385 27 C 0.062 3.938 28 C 0.019 3.981 29 C -0.148 4.148 30 C -0.125 4.125 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.344 0.656 35 H 0.015 0.985 36 H 0.027 0.973 37 H 0.078 0.922 38 H 0.261 0.739 39 H 0.410 0.590 40 H 0.140 0.860 41 H 0.126 0.874 42 H 0.093 0.907 43 H 0.055 0.945 44 H 0.101 0.899 45 H 0.061 0.939 46 H 0.102 0.898 47 H 0.062 0.938 48 H 0.052 0.948 49 H 0.093 0.907 50 H 0.127 0.873 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.935 -7.702 -25.867 27.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.040 4.040 3 H 0.094 0.906 4 N -0.308 5.308 5 C 0.099 3.901 6 H 0.053 0.947 7 C -0.180 4.180 8 C -0.587 4.587 9 H 0.072 0.928 10 C -0.135 4.135 11 N -0.523 5.523 12 Si 0.716 3.284 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.209 1.209 16 C 0.305 3.695 17 O -0.386 6.386 18 N -0.324 5.324 19 C 0.042 3.958 20 C -0.118 4.118 21 C -0.136 4.136 22 C -0.015 4.015 23 N -0.203 5.203 24 C -0.114 4.114 25 C -0.015 4.015 26 O -0.304 6.304 27 C -0.015 4.015 28 C -0.107 4.107 29 C -0.169 4.169 30 C -0.146 4.146 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.164 0.836 35 H 0.034 0.966 36 H 0.046 0.954 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.245 0.755 40 H 0.158 0.842 41 H 0.144 0.856 42 H 0.112 0.888 43 H 0.073 0.927 44 H 0.119 0.881 45 H 0.080 0.920 46 H 0.120 0.880 47 H 0.080 0.920 48 H 0.070 0.930 49 H 0.112 0.888 50 H 0.145 0.855 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.743 -8.882 -25.495 27.256 hybrid contribution 1.106 2.173 0.037 2.439 sum -2.638 -6.709 -25.458 26.459 Atomic orbital electron populations 1.21732 0.93231 1.01920 1.02101 1.21363 0.96582 0.97635 0.88426 0.90625 1.60997 1.33477 1.34081 1.02230 1.19236 0.95913 0.88986 0.85921 0.94685 1.21652 0.97267 0.98630 1.00497 1.21886 1.04280 1.22060 1.10460 0.92843 1.24924 0.96548 0.96676 0.95306 1.69903 1.34625 1.34642 1.13114 0.86597 0.83939 0.79741 0.78080 1.19913 1.21018 1.20858 1.21401 0.78850 0.84817 0.84421 1.90670 1.35738 1.25990 1.86161 1.43722 1.57436 1.26817 1.04474 1.17779 0.99857 0.91281 0.86859 1.21106 0.99433 0.92411 0.98807 1.20632 1.02026 0.99840 0.91083 1.18834 0.99503 0.91668 0.91465 1.59432 1.40731 1.16493 1.03603 1.22967 1.01908 0.95570 0.90986 1.22716 0.91211 0.90870 0.96676 1.87998 1.58982 1.45726 1.37656 1.22719 1.01060 0.91554 0.86166 1.22943 0.92877 0.95445 0.99396 1.20992 1.04042 0.92968 0.98938 1.20733 1.01703 0.99675 0.92517 0.93231 0.92301 0.90863 0.83636 0.96575 0.95427 0.90320 0.92912 0.75458 0.84240 0.85584 0.88823 0.92711 0.88058 0.92022 0.88015 0.91986 0.92971 0.88828 0.85487 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 9.28 37.16 0.34 -1.61 16 2 C 0.07 1.32 2.84 -68.87 -0.20 1.12 16 3 H 0.08 1.43 7.63 -51.93 -0.40 1.03 16 4 N -0.67 -14.54 5.91 -102.17 -0.60 -15.14 16 5 C 0.21 5.09 2.39 -68.87 -0.16 4.93 16 6 H 0.04 0.91 7.00 -51.93 -0.36 0.55 16 7 C -0.12 -2.99 9.19 37.16 0.34 -2.65 16 8 C -0.55 -14.72 8.23 -34.44 -0.28 -15.01 16 9 H 0.05 1.46 7.75 -52.49 -0.41 1.06 16 10 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 11 N -0.88 -24.69 11.40 55.43 0.63 -24.06 16 12 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 13 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 C 0.52 8.72 6.92 -10.99 -0.08 8.64 16 17 O -0.51 -10.24 13.33 5.54 0.07 -10.16 16 18 N -0.68 -8.89 5.23 -9.82 -0.05 -8.94 16 19 C 0.14 1.80 6.29 -83.60 -0.53 1.28 16 20 C -0.10 -1.33 8.65 -39.41 -0.34 -1.67 16 21 C -0.12 -1.36 9.20 -39.41 -0.36 -1.73 16 22 C 0.08 0.90 5.64 -83.70 -0.47 0.43 16 23 N -0.49 -4.52 4.78 -170.76 -0.82 -5.34 16 24 C 0.01 0.10 4.33 -3.72 -0.02 0.08 16 25 C 0.06 0.42 7.01 37.20 0.26 0.68 16 26 O -0.39 -3.29 10.83 -35.23 -0.38 -3.68 16 27 C 0.06 0.42 7.01 37.20 0.26 0.69 16 28 C 0.02 0.15 5.41 -3.72 -0.02 0.13 16 29 C -0.15 -1.52 8.81 -39.41 -0.35 -1.87 16 30 C -0.13 -1.37 9.95 -39.42 -0.39 -1.77 16 31 H 0.05 0.56 7.84 -51.93 -0.41 0.16 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.19 7.27 -51.93 -0.38 0.81 16 34 H 0.34 7.94 7.19 -39.29 -0.28 7.66 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.08 2.07 6.28 -51.93 -0.33 1.74 16 38 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.41 4.12 8.49 -40.82 -0.35 3.77 16 40 H 0.14 2.15 6.38 -52.48 -0.33 1.81 16 41 H 0.13 1.31 7.20 -52.49 -0.38 0.93 16 42 H 0.09 0.64 7.21 -51.93 -0.37 0.27 16 43 H 0.05 0.41 7.55 -51.93 -0.39 0.02 16 44 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.09 0.66 6.86 -51.93 -0.36 0.30 16 50 H 0.13 1.03 5.81 -52.48 -0.30 0.73 16 51 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 400.75 15.07 6.04 6.04 Total: -1.00 -31.39 400.75 -10.20 -41.58 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -7.99 Total: 10.17 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -2.08 Total: -6.57 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -0.84 Total: -53.48 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.31 Total: -13.84 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.39 -10.20 -41.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878818210.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.054 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds