Wall clock time and date at job start Wed Apr 1 2020 04:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47105 * 2 1 4 4 N 1.46905 * 109.46496 * 119.99717 * 2 1 3 5 5 C 1.46900 * 110.99863 * 276.27473 * 4 2 1 6 6 H 1.09001 * 109.46940 * 35.44991 * 5 4 2 7 7 C 1.53001 * 109.46758 * 155.44642 * 5 4 2 8 8 C 1.50696 * 109.47224 * 275.44179 * 5 4 2 9 9 H 1.07998 * 120.00096 * 0.02562 * 8 5 4 10 10 C 1.37885 * 119.99862 * 179.97438 * 8 5 4 11 11 N 1.31507 * 119.99807 * 0.02562 * 10 8 5 12 12 Si 1.86798 * 119.99878 * 180.02562 * 10 8 5 13 13 H 1.48506 * 109.47382 * 0.02562 * 12 10 8 14 14 H 1.48494 * 109.47317 * 120.00161 * 12 10 8 15 15 H 1.48507 * 109.47045 * 240.00435 * 12 10 8 16 16 C 1.50696 * 109.47281 * 239.99621 * 2 1 3 17 17 O 1.21302 * 120.00095 * 240.00381 * 16 2 1 18 18 N 1.34778 * 120.00190 * 60.00687 * 16 2 1 19 19 C 1.40144 * 120.00136 * 185.14557 * 18 16 2 20 20 C 1.38860 * 119.99641 * 32.92877 * 19 18 16 21 21 C 1.38064 * 120.00226 * 179.97438 * 20 19 18 22 22 C 1.38885 * 119.99663 * 0.02562 * 21 20 19 23 23 N 1.39894 * 120.00297 * 179.97438 * 22 21 20 24 24 C 1.47014 * 111.00069 * 180.02562 * 23 22 21 25 25 C 1.53089 * 109.25920 * 177.60974 * 24 23 22 26 26 O 1.43021 * 109.25715 * 56.84851 * 25 24 23 27 27 C 1.43009 * 113.74247 * 301.33236 * 26 25 24 28 28 C 1.47014 * 110.99851 * 56.37259 * 23 22 21 29 29 C 1.38885 * 119.98920 * 0.26060 * 22 21 20 30 30 C 1.38057 * 119.99970 * 359.48593 * 29 22 21 31 31 H 1.09001 * 109.46684 * 55.29783 * 1 2 3 32 32 H 1.09000 * 109.47162 * 175.28969 * 1 2 3 33 33 H 1.09000 * 109.47657 * 295.29690 * 1 2 3 34 34 H 1.00901 * 110.99333 * 152.32206 * 4 2 1 35 35 H 1.09003 * 109.47261 * 306.72820 * 7 5 4 36 36 H 1.09000 * 109.47443 * 66.73062 * 7 5 4 37 37 H 1.09004 * 109.47174 * 186.73120 * 7 5 4 38 38 H 0.97002 * 120.00044 * 179.97438 * 11 10 8 39 39 H 0.96999 * 119.99933 * 5.13828 * 18 16 2 40 40 H 1.08005 * 119.99659 * 0.02562 * 20 19 18 41 41 H 1.07997 * 119.99718 * 180.02562 * 21 20 19 42 42 H 1.09001 * 109.50070 * 57.67444 * 24 23 22 43 43 H 1.09003 * 109.50721 * 297.54887 * 24 23 22 44 44 H 1.09002 * 109.50670 * 176.78485 * 25 24 23 45 45 H 1.09004 * 109.51000 * 296.87726 * 25 24 23 46 46 H 1.08991 * 109.50720 * 178.60271 * 27 26 25 47 47 H 1.09006 * 109.50520 * 298.73196 * 27 26 25 48 48 H 1.08999 * 109.51063 * 62.44969 * 28 23 22 49 49 H 1.09006 * 109.54034 * 302.34540 * 28 23 22 50 50 H 1.08006 * 119.99997 * 179.72280 * 29 22 21 51 51 H 1.08000 * 119.99872 * 180.27826 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0195 -0.6925 1.1996 5 6 2.0536 0.2150 2.3542 6 1 1.2121 0.9055 2.2985 7 6 1.9603 -0.5996 3.6460 8 6 3.3439 0.9934 2.3434 9 1 4.0662 0.8306 1.5572 10 6 3.6018 1.9143 3.3368 11 7 2.7220 2.1128 4.2938 12 14 5.2009 2.8797 3.3230 13 1 6.0140 2.4741 2.1484 14 1 4.9018 4.3318 3.2396 15 1 5.9581 2.6010 4.5697 16 6 2.0323 -0.7105 -1.2304 17 8 2.7297 -1.6967 -1.1190 18 7 1.7069 -0.2500 -2.4545 19 6 2.0826 -0.9700 -3.5967 20 6 2.1441 -2.3566 -3.5543 21 6 2.5137 -3.0660 -4.6796 22 6 2.8246 -2.3926 -5.8539 23 7 3.1997 -3.1113 -6.9940 24 6 3.4838 -2.2064 -8.1173 25 6 3.9467 -3.0283 -9.3231 26 8 2.9445 -3.9957 -9.6473 27 6 2.6433 -4.8939 -8.5760 28 6 2.1675 -4.0913 -7.3623 29 6 2.7688 -1.0055 -5.8943 30 6 2.3941 -0.2967 -4.7704 31 1 -0.3633 0.5851 -0.8449 32 1 -0.3633 -1.0242 -0.0844 33 1 -0.3634 0.4391 0.9291 34 1 2.9265 -1.1029 1.0352 35 1 1.0885 -1.2524 3.6017 36 1 2.8607 -1.2031 3.7608 37 1 1.8651 0.0764 4.4958 38 1 2.9036 2.7604 4.9928 39 1 1.2125 0.5796 -2.5450 40 1 1.9019 -2.8801 -2.6412 41 1 2.5611 -4.1444 -4.6467 42 1 4.2687 -1.5063 -7.8310 43 1 2.5805 -1.6548 -8.3779 44 1 4.1038 -2.3673 -10.1755 45 1 4.8796 -3.5372 -9.0803 46 1 1.8578 -5.5821 -8.8879 47 1 3.5379 -5.4576 -8.3112 48 1 1.2429 -3.5702 -7.6106 49 1 1.9910 -4.7668 -6.5252 50 1 3.0149 -0.4815 -6.8061 51 1 2.3464 0.7818 -4.8032 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878818210.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:01 Heat of formation + Delta-G solvation = -57.529651 kcal Electronic energy + Delta-G solvation = -30241.063446 eV Core-core repulsion = 26139.721993 eV Total energy + Delta-G solvation = -4101.341453 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.84729 -41.08737 -39.39665 -37.77175 -36.89250 -35.20906 -34.68143 -32.77114 -32.34124 -31.59106 -30.23986 -28.85328 -27.40301 -27.16560 -25.63230 -25.02734 -23.41161 -22.83752 -21.98798 -21.38955 -20.82225 -19.16265 -18.76981 -18.24416 -17.92148 -17.21073 -16.75076 -16.61297 -16.57517 -16.34520 -16.11915 -15.90644 -15.62839 -15.28889 -15.10023 -14.98119 -14.70775 -14.44239 -14.14473 -13.79733 -13.60535 -13.51438 -13.35289 -13.16811 -13.10906 -12.93271 -12.80468 -12.74423 -12.51854 -12.40092 -12.26981 -12.02208 -11.95301 -11.92422 -11.73847 -11.58956 -11.13348 -10.83264 -10.71375 -10.53395 -10.12223 -9.93309 -9.19326 -8.55472 -8.10468 -6.30720 0.21881 0.38968 1.34997 1.38752 1.48446 1.53856 1.98887 2.38159 2.50840 2.84011 2.92144 3.11682 3.57464 3.64554 3.78148 3.82437 3.94933 3.97079 4.10848 4.18580 4.23202 4.25794 4.35141 4.40393 4.47650 4.52025 4.57083 4.67393 4.75401 4.76076 4.77953 4.87336 4.92139 4.96822 5.00202 5.05216 5.14355 5.19166 5.22920 5.34751 5.35503 5.46335 5.47586 5.64782 5.74202 5.92307 6.00185 6.11828 6.12334 6.22354 6.26718 6.40954 6.71530 6.92383 7.10466 7.40581 8.88399 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021078 B = 0.001926 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.095799 B =14535.364180 C =15142.876208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.072 3.928 3 H 0.067 0.933 4 N -0.674 5.674 5 C 0.214 3.786 6 H 0.020 0.980 7 C -0.113 4.113 8 C -0.560 4.560 9 H 0.042 0.958 10 C 0.024 3.976 11 N -0.907 5.907 12 Si 0.949 3.051 13 H -0.276 1.276 14 H -0.275 1.275 15 H -0.280 1.280 16 C 0.520 3.480 17 O -0.550 6.550 18 N -0.659 5.659 19 C 0.111 3.889 20 C -0.114 4.114 21 C -0.124 4.124 22 C 0.087 3.913 23 N -0.495 5.495 24 C 0.011 3.989 25 C 0.061 3.939 26 O -0.402 6.402 27 C 0.063 3.937 28 C 0.020 3.980 29 C -0.149 4.149 30 C -0.116 4.116 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.333 0.667 35 H 0.031 0.969 36 H 0.018 0.982 37 H 0.059 0.941 38 H 0.264 0.736 39 H 0.425 0.575 40 H 0.115 0.885 41 H 0.133 0.867 42 H 0.102 0.898 43 H 0.058 0.942 44 H 0.122 0.878 45 H 0.061 0.939 46 H 0.120 0.880 47 H 0.063 0.937 48 H 0.049 0.951 49 H 0.097 0.903 50 H 0.154 0.846 51 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.785 -6.826 -28.478 29.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.042 4.042 3 H 0.084 0.916 4 N -0.306 5.306 5 C 0.105 3.895 6 H 0.038 0.962 7 C -0.171 4.171 8 C -0.600 4.600 9 H 0.061 0.939 10 C -0.177 4.177 11 N -0.546 5.546 12 Si 0.775 3.225 13 H -0.201 1.201 14 H -0.201 1.201 15 H -0.206 1.206 16 C 0.309 3.691 17 O -0.427 6.427 18 N -0.306 5.306 19 C 0.017 3.983 20 C -0.135 4.135 21 C -0.145 4.145 22 C -0.011 4.011 23 N -0.212 5.212 24 C -0.115 4.115 25 C -0.015 4.015 26 O -0.321 6.321 27 C -0.014 4.014 28 C -0.106 4.106 29 C -0.170 4.170 30 C -0.137 4.137 31 H 0.108 0.892 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.151 0.849 35 H 0.050 0.950 36 H 0.038 0.962 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.264 0.736 40 H 0.133 0.867 41 H 0.151 0.849 42 H 0.120 0.880 43 H 0.077 0.923 44 H 0.140 0.860 45 H 0.079 0.921 46 H 0.137 0.863 47 H 0.081 0.919 48 H 0.067 0.933 49 H 0.115 0.885 50 H 0.171 0.829 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.624 -7.987 -28.156 29.491 hybrid contribution 1.057 1.845 0.714 2.243 sum -2.567 -6.142 -27.442 28.238 Atomic orbital electron populations 1.21695 0.90793 1.02581 1.03100 1.21448 0.98368 0.96666 0.87724 0.91576 1.60935 1.32672 1.33808 1.03184 1.19034 0.94405 0.88904 0.87133 0.96173 1.21519 0.97521 0.98224 0.99877 1.22078 1.04928 1.22656 1.10289 0.93934 1.25613 0.99442 0.97580 0.95036 1.69999 1.36001 1.35105 1.13497 0.85649 0.80291 0.78704 0.77809 1.20106 1.20087 1.20598 1.21109 0.78560 0.84256 0.85212 1.90659 1.37613 1.27651 1.86736 1.43407 1.56694 1.27035 1.03415 1.17938 1.01810 0.91183 0.87392 1.21011 1.00796 0.93076 0.98571 1.20703 1.02380 1.00311 0.91123 1.19005 0.98193 0.92226 0.91657 1.59421 1.40986 1.16952 1.03834 1.23064 1.02332 0.95594 0.90554 1.22844 0.90713 0.90841 0.97149 1.87980 1.59458 1.46231 1.38403 1.22815 1.01704 0.91408 0.85486 1.22982 0.92349 0.95249 0.99991 1.21325 1.03153 0.92808 0.99679 1.20998 1.00220 1.00954 0.91524 0.89231 0.92303 0.92306 0.84865 0.94991 0.96230 0.92261 0.92684 0.73621 0.86715 0.84910 0.87997 0.92342 0.86039 0.92110 0.86257 0.91907 0.93304 0.88477 0.82876 0.83104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.58 9.28 71.98 0.67 -2.91 16 2 C 0.07 2.57 2.84 44.17 0.13 2.69 16 3 H 0.07 2.52 7.63 -2.39 -0.02 2.50 16 4 N -0.67 -29.73 5.91 -477.17 -2.82 -32.55 16 5 C 0.21 10.73 2.39 44.17 0.11 10.83 16 6 H 0.02 1.08 7.00 -2.39 -0.02 1.06 16 7 C -0.11 -5.64 9.19 71.98 0.66 -4.98 16 8 C -0.56 -30.58 8.23 25.60 0.21 -30.37 16 9 H 0.04 2.37 7.75 -2.91 -0.02 2.35 16 10 C 0.02 1.31 5.30 84.66 0.45 1.76 16 11 N -0.91 -50.99 11.40 21.45 0.24 -50.74 16 12 Si 0.95 43.42 29.54 68.60 2.03 45.44 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 14 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 15 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 16 C 0.52 17.66 6.92 87.66 0.61 18.27 16 17 O -0.55 -22.69 13.33 -3.10 -0.04 -22.73 16 18 N -0.66 -16.65 5.23 -303.35 -1.59 -18.24 16 19 C 0.11 2.82 6.29 38.11 0.24 3.06 16 20 C -0.11 -3.17 8.65 22.38 0.19 -2.97 16 21 C -0.12 -2.91 9.20 22.38 0.21 -2.71 16 22 C 0.09 1.75 5.64 38.16 0.22 1.97 16 23 N -0.50 -8.31 4.78 -694.16 -3.32 -11.63 16 24 C 0.01 0.14 4.33 86.31 0.37 0.52 16 25 C 0.06 0.69 7.01 72.01 0.50 1.19 16 26 O -0.40 -6.07 10.83 -148.98 -1.61 -7.68 16 27 C 0.06 0.75 7.01 72.01 0.50 1.25 16 28 C 0.02 0.28 5.41 86.31 0.47 0.75 16 29 C -0.15 -2.67 8.81 22.38 0.20 -2.47 16 30 C -0.12 -2.27 9.95 22.37 0.22 -2.05 16 31 H 0.09 1.84 7.84 -2.39 -0.02 1.82 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.06 1.88 7.27 -2.39 -0.02 1.87 16 34 H 0.33 15.90 7.19 -89.69 -0.65 15.25 16 35 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.06 3.18 6.28 -2.39 -0.01 3.16 16 38 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 39 H 0.43 7.71 8.49 -92.71 -0.79 6.92 16 40 H 0.11 3.74 6.38 -2.91 -0.02 3.72 16 41 H 0.13 2.77 7.20 -2.91 -0.02 2.75 16 42 H 0.10 1.10 7.21 -2.39 -0.02 1.08 16 43 H 0.06 0.71 7.55 -2.39 -0.02 0.69 16 44 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 46 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 48 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.10 1.26 6.86 -2.38 -0.02 1.25 16 50 H 0.15 1.92 5.81 -2.91 -0.02 1.90 16 51 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -68.34 400.75 -1.63 -69.97 By element: Atomic # 1 Polarization: 34.81 SS G_CDS: -0.48 Total: 34.34 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 5.95 Total: -6.18 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -7.48 Total: -113.16 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -1.65 Total: -30.41 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -68.34 -1.63 -69.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878818210.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.442 kcal (2) G-P(sol) polarization free energy of solvation -68.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds