Wall clock time and date at job start Wed Apr 1 2020 05:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47111 * 2 1 4 4 C 1.53005 * 109.47061 * 119.99944 * 2 1 3 5 5 N 1.46503 * 109.46713 * 295.00037 * 4 2 1 6 6 C 1.46506 * 119.99814 * 269.99588 * 5 4 2 7 7 C 1.34770 * 120.00260 * 90.00423 * 5 4 2 8 8 O 1.21364 * 119.99599 * 0.58253 * 7 5 4 9 9 C 1.49366 * 120.00336 * 180.58941 * 7 5 4 10 10 O 1.21356 * 119.99800 * 354.15764 * 9 7 5 11 11 N 1.34780 * 120.00159 * 174.16622 * 9 7 5 12 12 C 1.39114 * 119.99992 * 186.16429 * 11 9 7 13 13 C 1.39704 * 119.57798 * 175.26783 * 12 11 9 14 14 C 1.38654 * 119.49292 * 180.02562 * 13 12 11 15 15 C 1.38349 * 118.67087 * 359.71961 * 14 13 12 16 16 C 1.40600 * 119.13182 * 0.54046 * 15 14 13 17 17 C 1.41342 * 119.78081 * 179.72691 * 16 15 14 18 18 H 1.07998 * 119.99991 * 13.90880 * 17 16 15 19 19 C 1.40028 * 119.99668 * 193.91011 * 17 16 15 20 20 N 1.30743 * 120.00262 * 12.43607 * 19 17 16 21 21 Si 1.86801 * 119.99688 * 192.44106 * 19 17 16 22 22 H 1.48500 * 109.47072 * 265.01341 * 21 19 17 23 23 H 1.48490 * 109.47512 * 25.01480 * 21 19 17 24 24 H 1.48502 * 109.47047 * 145.01555 * 21 19 17 25 25 N 1.31932 * 119.57561 * 355.28069 * 12 11 9 26 26 C 1.53000 * 109.47425 * 239.99701 * 2 1 3 27 27 C 1.53007 * 109.47059 * 300.00178 * 26 2 1 28 28 C 1.52997 * 109.47211 * 60.00039 * 26 2 1 29 29 C 1.52999 * 109.47425 * 180.02562 * 26 2 1 30 30 H 1.08997 * 109.47170 * 300.00313 * 1 2 3 31 31 H 1.08996 * 109.46730 * 60.00659 * 1 2 3 32 32 H 1.09003 * 109.46848 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47013 * 175.00168 * 4 2 1 34 34 H 1.08996 * 109.47154 * 54.99663 * 4 2 1 35 35 H 1.09001 * 109.47309 * 263.49743 * 6 5 4 36 36 H 1.08998 * 109.46705 * 23.50053 * 6 5 4 37 37 H 1.08995 * 109.46704 * 143.49876 * 6 5 4 38 38 H 0.97000 * 119.99746 * 6.15508 * 11 9 7 39 39 H 1.08000 * 120.25665 * 359.97438 * 13 12 11 40 40 H 1.08000 * 120.66439 * 180.02562 * 14 13 12 41 41 H 1.07996 * 120.43203 * 180.28638 * 15 14 13 42 42 H 0.97000 * 120.00047 * 180.02562 * 20 19 17 43 43 H 1.08995 * 109.47127 * 59.99863 * 27 26 2 44 44 H 1.08997 * 109.46762 * 180.02562 * 27 26 2 45 45 H 1.08996 * 109.46762 * 299.99474 * 27 26 2 46 46 H 1.09003 * 109.47346 * 59.99948 * 28 26 2 47 47 H 1.08997 * 109.47327 * 180.02562 * 28 26 2 48 48 H 1.09007 * 109.46818 * 300.00449 * 28 26 2 49 49 H 1.09005 * 109.46964 * 60.00199 * 29 26 2 50 50 H 1.08997 * 109.47170 * 179.97438 * 29 26 2 51 51 H 1.08998 * 109.47111 * 300.00299 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6524 0.0354 2.4424 6 6 2.5427 1.0697 2.9751 7 6 0.4768 -0.2200 3.0500 8 8 -0.2559 -1.0842 2.6149 9 6 0.0756 0.5605 4.2586 10 8 0.8516 1.3496 4.7564 11 7 -1.1481 0.3883 4.7965 12 6 -1.5698 1.2043 5.8413 13 6 -2.8747 1.0850 6.3260 14 6 -3.2933 1.8995 7.3670 15 6 -2.3966 2.8078 7.9010 16 6 -1.0987 2.8837 7.3657 17 6 -0.1734 3.8108 7.8969 18 1 -0.3755 4.2948 8.8410 19 6 1.0052 4.1016 7.1990 20 7 1.1429 3.7135 5.9581 21 14 2.3808 5.0440 8.0411 22 1 2.2561 6.4896 7.7250 23 1 2.2876 4.8488 9.5102 24 1 3.6924 4.5429 7.5574 25 7 -0.7325 2.0811 6.3615 26 6 2.0401 -0.7213 -1.2492 27 6 1.5300 -2.1639 -1.2491 28 6 1.5301 -0.0002 -2.4985 29 6 3.5700 -0.7219 -1.2489 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1264 -0.7995 1.2056 34 1 1.6053 -1.7198 1.2952 35 1 3.1436 0.6513 3.7826 36 1 3.1989 1.4279 2.1819 37 1 1.9481 1.8994 3.3572 38 1 -1.7349 -0.3046 4.4550 39 1 -3.5524 0.3644 5.8926 40 1 -4.2977 1.8230 7.7566 41 1 -2.6911 3.4529 8.7155 42 1 1.9595 3.9147 5.4749 43 1 0.4401 -2.1639 -1.2492 44 1 1.8938 -2.6778 -2.1388 45 1 1.8934 -2.6776 -0.3592 46 1 1.8934 1.0275 -2.4985 47 1 1.8931 -0.5143 -3.3884 48 1 0.4401 -0.0001 -2.4984 49 1 3.9330 -1.2360 -0.3588 50 1 3.9334 -1.2361 -2.1386 51 1 3.9337 0.3057 -1.2486 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890440964.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:54 Heat of formation + Delta-G solvation = -19.307382 kcal Electronic energy + Delta-G solvation = -31894.780697 eV Core-core repulsion = 27795.096686 eV Total energy + Delta-G solvation = -4099.684011 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.58721 -39.19003 -38.22293 -37.19447 -35.57055 -34.11134 -33.07006 -31.21592 -30.43271 -29.23815 -28.54200 -27.51460 -26.67620 -26.32416 -25.62186 -23.99090 -22.39681 -21.52861 -20.65494 -19.19643 -18.33662 -17.94085 -16.87900 -16.77433 -16.09693 -15.98926 -15.21066 -14.78783 -14.68815 -14.61422 -14.49819 -14.11226 -13.99680 -13.74145 -13.57762 -13.36341 -12.97365 -12.88327 -12.76803 -12.24623 -12.17845 -12.13813 -12.03794 -12.02486 -11.97182 -11.79306 -11.31658 -11.26510 -11.24058 -11.01405 -10.83707 -10.73899 -10.64606 -10.55433 -10.49372 -10.43667 -10.08089 -9.69121 -9.06652 -8.81580 -8.52326 -8.09732 -7.33732 -7.06884 -6.43359 -4.42997 1.92199 2.74134 2.80603 3.05828 3.13121 3.15743 3.22380 3.91846 3.93230 4.00671 4.55036 4.57350 4.60155 4.81458 4.82783 4.98255 5.13931 5.23418 5.37778 5.41304 5.42510 5.47079 5.55406 5.64238 5.69061 5.72556 5.79425 5.85889 5.88957 5.92344 5.93489 6.00995 6.05936 6.06079 6.14523 6.26457 6.29600 6.42754 6.48848 6.55629 6.56583 6.74991 6.78081 7.17023 7.25084 7.44352 7.49145 7.74149 7.85954 8.01961 8.16971 8.36532 8.64027 8.87215 8.99547 10.09446 10.35811 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013607 B = 0.003091 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.229938 B = 9055.261787 C =10592.721238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 H 0.071 0.929 4 C 0.113 3.887 5 N -0.588 5.588 6 C 0.069 3.931 7 C 0.507 3.493 8 O -0.531 6.531 9 C 0.472 3.528 10 O -0.397 6.397 11 N -0.638 5.638 12 C 0.370 3.630 13 C -0.346 4.346 14 C -0.035 4.035 15 C -0.300 4.300 16 C 0.281 3.719 17 C -0.432 4.432 18 H 0.084 0.916 19 C 0.073 3.927 20 N -0.683 5.683 21 Si 0.899 3.101 22 H -0.272 1.272 23 H -0.262 1.262 24 H -0.276 1.276 25 N -0.482 5.482 26 C -0.062 4.062 27 C -0.146 4.146 28 C -0.142 4.142 29 C -0.146 4.146 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.112 0.888 38 H 0.412 0.588 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.274 0.726 43 H 0.061 0.939 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.053 0.947 47 H 0.052 0.948 48 H 0.059 0.941 49 H 0.057 0.943 50 H 0.054 0.946 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.919 -7.249 -14.176 16.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 H 0.090 0.910 4 C -0.009 4.009 5 N -0.321 5.321 6 C -0.073 4.073 7 C 0.290 3.710 8 O -0.409 6.409 9 C 0.250 3.750 10 O -0.261 6.261 11 N -0.287 5.287 12 C 0.131 3.869 13 C -0.372 4.372 14 C -0.060 4.060 15 C -0.323 4.323 16 C 0.156 3.844 17 C -0.463 4.463 18 H 0.102 0.898 19 C -0.155 4.155 20 N -0.302 5.302 21 Si 0.723 3.277 22 H -0.198 1.198 23 H -0.186 1.186 24 H -0.201 1.201 25 N -0.201 5.201 26 C -0.062 4.062 27 C -0.203 4.203 28 C -0.199 4.199 29 C -0.203 4.203 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.130 0.870 38 H 0.247 0.753 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.078 0.922 49 H 0.076 0.924 50 H 0.073 0.927 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.187 -7.001 -14.587 17.323 hybrid contribution -0.497 -0.024 0.420 0.651 sum 5.690 -7.024 -14.167 16.806 Atomic orbital electron populations 1.21906 0.94339 1.02496 1.01225 1.21548 0.96969 0.99556 0.93414 0.91044 1.21807 0.99820 0.96073 0.83197 1.47695 1.18862 1.37846 1.27711 1.22371 0.94598 0.92217 0.98140 1.20657 0.81667 0.83844 0.84824 1.90687 1.51472 1.32982 1.65724 1.20094 0.84077 0.85218 0.85594 1.91019 1.47739 1.29897 1.57491 1.43026 1.16328 1.35446 1.33861 1.18455 0.89746 0.90614 0.88055 1.20514 0.96384 1.11557 1.08709 1.20604 0.97237 0.93942 0.94183 1.21681 0.96262 1.06605 1.07744 1.18306 0.89676 0.89517 0.86931 1.19502 1.01775 1.19403 1.05616 0.89807 1.25981 0.99127 0.95697 0.94728 1.70012 1.24949 1.27387 1.07809 0.86459 0.80505 0.79780 0.80922 1.19774 1.18620 1.20122 1.68407 1.31938 1.06336 1.13375 1.20504 0.95270 0.95704 0.94763 1.21983 1.01659 0.95146 1.01498 1.21910 1.01424 1.00016 0.96553 1.21965 0.94753 1.01828 1.01723 0.92852 0.93094 0.91795 0.90198 0.89516 0.92260 0.92276 0.86991 0.75287 0.88678 0.88330 0.88313 0.91458 0.92034 0.92977 0.92447 0.92770 0.92866 0.92211 0.92393 0.92716 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 7.24 37.16 0.27 -1.49 16 2 C -0.10 -1.01 1.96 -90.62 -0.18 -1.19 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 4 C 0.11 1.31 4.25 -4.04 -0.02 1.29 16 5 N -0.59 -8.52 2.76 -182.11 -0.50 -9.02 16 6 C 0.07 0.97 9.40 59.85 0.56 1.54 16 7 C 0.51 8.76 6.30 -11.63 -0.07 8.69 16 8 O -0.53 -9.41 14.33 5.48 0.08 -9.33 16 9 C 0.47 9.70 7.71 -11.62 -0.09 9.61 16 10 O -0.40 -9.16 9.72 5.49 0.05 -9.11 16 11 N -0.64 -13.21 5.37 -11.83 -0.06 -13.28 16 12 C 0.37 8.95 7.43 -155.09 -1.15 7.80 16 13 C -0.35 -7.74 9.95 -38.88 -0.39 -8.13 16 14 C -0.04 -0.79 10.15 -39.39 -0.40 -1.19 16 15 C -0.30 -7.38 9.83 -38.65 -0.38 -7.76 16 16 C 0.28 7.67 6.45 -84.99 -0.55 7.12 16 17 C -0.43 -11.51 9.11 -37.73 -0.34 -11.85 16 18 H 0.08 2.10 7.88 -52.49 -0.41 1.68 16 19 C 0.07 1.84 5.41 -17.34 -0.09 1.75 16 20 N -0.68 -17.70 10.06 55.55 0.56 -17.14 16 21 Si 0.90 18.55 29.58 -169.99 -5.03 13.53 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 25 N -0.48 -13.09 5.88 -10.28 -0.06 -13.16 16 26 C -0.06 -0.53 0.57 -154.51 -0.09 -0.62 16 27 C -0.15 -1.24 7.77 37.16 0.29 -0.95 16 28 C -0.14 -1.15 8.12 37.16 0.30 -0.85 16 29 C -0.15 -1.10 8.13 37.16 0.30 -0.80 16 30 H 0.05 0.80 6.07 -51.93 -0.32 0.49 16 31 H 0.05 0.56 6.43 -51.93 -0.33 0.23 16 32 H 0.06 0.81 6.30 -51.93 -0.33 0.48 16 33 H 0.08 0.77 6.10 -51.92 -0.32 0.46 16 34 H 0.09 1.08 5.98 -51.93 -0.31 0.76 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.66 8.02 -51.93 -0.42 0.25 16 37 H 0.11 1.96 5.60 -51.93 -0.29 1.66 16 38 H 0.41 7.33 8.18 -40.82 -0.33 7.00 16 39 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 40 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 42 H 0.27 6.51 8.29 -40.82 -0.34 6.17 16 43 H 0.06 0.57 6.43 -51.93 -0.33 0.23 16 44 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.50 6.54 -51.93 -0.34 0.16 16 46 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.06 0.51 6.43 -51.92 -0.33 0.17 16 49 H 0.06 0.43 6.32 -51.93 -0.33 0.10 16 50 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 51 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 394.54 15.07 5.95 5.95 Total: -1.00 -29.88 394.54 -8.80 -38.68 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -7.76 Total: 9.92 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -2.03 Total: 2.96 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.07 Total: -52.60 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.13 Total: -18.43 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.88 -8.80 -38.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890440964.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.372 kcal (2) G-P(sol) polarization free energy of solvation -29.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds