Wall clock time and date at job start Wed Apr 1 2020 05:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47111 * 2 1 4 4 C 1.53005 * 109.47061 * 119.99944 * 2 1 3 5 5 N 1.46503 * 109.46713 * 295.00037 * 4 2 1 6 6 C 1.46506 * 119.99814 * 269.99588 * 5 4 2 7 7 C 1.34770 * 120.00260 * 90.00423 * 5 4 2 8 8 O 1.21364 * 119.99599 * 0.58253 * 7 5 4 9 9 C 1.49366 * 120.00336 * 180.58941 * 7 5 4 10 10 O 1.21356 * 119.99800 * 354.15764 * 9 7 5 11 11 N 1.34780 * 120.00159 * 174.16622 * 9 7 5 12 12 C 1.39114 * 119.99992 * 186.16429 * 11 9 7 13 13 C 1.39704 * 119.57798 * 175.26783 * 12 11 9 14 14 C 1.38654 * 119.49292 * 180.02562 * 13 12 11 15 15 C 1.38349 * 118.67087 * 359.71961 * 14 13 12 16 16 C 1.40600 * 119.13182 * 0.54046 * 15 14 13 17 17 C 1.41342 * 119.78081 * 179.72691 * 16 15 14 18 18 H 1.07998 * 119.99991 * 13.90880 * 17 16 15 19 19 C 1.40028 * 119.99668 * 193.91011 * 17 16 15 20 20 N 1.30743 * 120.00262 * 12.43607 * 19 17 16 21 21 Si 1.86801 * 119.99688 * 192.44106 * 19 17 16 22 22 H 1.48500 * 109.47072 * 265.01341 * 21 19 17 23 23 H 1.48490 * 109.47512 * 25.01480 * 21 19 17 24 24 H 1.48502 * 109.47047 * 145.01555 * 21 19 17 25 25 N 1.31932 * 119.57561 * 355.28069 * 12 11 9 26 26 C 1.53000 * 109.47425 * 239.99701 * 2 1 3 27 27 C 1.53007 * 109.47059 * 300.00178 * 26 2 1 28 28 C 1.52997 * 109.47211 * 60.00039 * 26 2 1 29 29 C 1.52999 * 109.47425 * 180.02562 * 26 2 1 30 30 H 1.08997 * 109.47170 * 300.00313 * 1 2 3 31 31 H 1.08996 * 109.46730 * 60.00659 * 1 2 3 32 32 H 1.09003 * 109.46848 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47013 * 175.00168 * 4 2 1 34 34 H 1.08996 * 109.47154 * 54.99663 * 4 2 1 35 35 H 1.09001 * 109.47309 * 263.49743 * 6 5 4 36 36 H 1.08998 * 109.46705 * 23.50053 * 6 5 4 37 37 H 1.08995 * 109.46704 * 143.49876 * 6 5 4 38 38 H 0.97000 * 119.99746 * 6.15508 * 11 9 7 39 39 H 1.08000 * 120.25665 * 359.97438 * 13 12 11 40 40 H 1.08000 * 120.66439 * 180.02562 * 14 13 12 41 41 H 1.07996 * 120.43203 * 180.28638 * 15 14 13 42 42 H 0.97000 * 120.00047 * 180.02562 * 20 19 17 43 43 H 1.08995 * 109.47127 * 59.99863 * 27 26 2 44 44 H 1.08997 * 109.46762 * 180.02562 * 27 26 2 45 45 H 1.08996 * 109.46762 * 299.99474 * 27 26 2 46 46 H 1.09003 * 109.47346 * 59.99948 * 28 26 2 47 47 H 1.08997 * 109.47327 * 180.02562 * 28 26 2 48 48 H 1.09007 * 109.46818 * 300.00449 * 28 26 2 49 49 H 1.09005 * 109.46964 * 60.00199 * 29 26 2 50 50 H 1.08997 * 109.47170 * 179.97438 * 29 26 2 51 51 H 1.08998 * 109.47111 * 300.00299 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6524 0.0354 2.4424 6 6 2.5427 1.0697 2.9751 7 6 0.4768 -0.2200 3.0500 8 8 -0.2559 -1.0842 2.6149 9 6 0.0756 0.5605 4.2586 10 8 0.8516 1.3496 4.7564 11 7 -1.1481 0.3883 4.7965 12 6 -1.5698 1.2043 5.8413 13 6 -2.8747 1.0850 6.3260 14 6 -3.2933 1.8995 7.3670 15 6 -2.3966 2.8078 7.9010 16 6 -1.0987 2.8837 7.3657 17 6 -0.1734 3.8108 7.8969 18 1 -0.3755 4.2948 8.8410 19 6 1.0052 4.1016 7.1990 20 7 1.1429 3.7135 5.9581 21 14 2.3808 5.0440 8.0411 22 1 2.2561 6.4896 7.7250 23 1 2.2876 4.8488 9.5102 24 1 3.6924 4.5429 7.5574 25 7 -0.7325 2.0811 6.3615 26 6 2.0401 -0.7213 -1.2492 27 6 1.5300 -2.1639 -1.2491 28 6 1.5301 -0.0002 -2.4985 29 6 3.5700 -0.7219 -1.2489 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1264 -0.7995 1.2056 34 1 1.6053 -1.7198 1.2952 35 1 3.1436 0.6513 3.7826 36 1 3.1989 1.4279 2.1819 37 1 1.9481 1.8994 3.3572 38 1 -1.7349 -0.3046 4.4550 39 1 -3.5524 0.3644 5.8926 40 1 -4.2977 1.8230 7.7566 41 1 -2.6911 3.4529 8.7155 42 1 1.9595 3.9147 5.4749 43 1 0.4401 -2.1639 -1.2492 44 1 1.8938 -2.6778 -2.1388 45 1 1.8934 -2.6776 -0.3592 46 1 1.8934 1.0275 -2.4985 47 1 1.8931 -0.5143 -3.3884 48 1 0.4401 -0.0001 -2.4984 49 1 3.9330 -1.2360 -0.3588 50 1 3.9334 -1.2361 -2.1386 51 1 3.9337 0.3057 -1.2486 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890440964.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:52 Heat of formation + Delta-G solvation = -35.188200 kcal Electronic energy + Delta-G solvation = -31895.469341 eV Core-core repulsion = 27795.096686 eV Total energy + Delta-G solvation = -4100.372655 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.97942 -40.60083 -39.52248 -38.73636 -36.89056 -35.78605 -34.85024 -32.31923 -32.11594 -31.07128 -29.39376 -28.18500 -27.94090 -27.60434 -27.10911 -25.34380 -23.73258 -23.20918 -22.19048 -20.73913 -19.62860 -19.12452 -18.44713 -18.23215 -17.59631 -17.28659 -16.54312 -16.41135 -16.30053 -15.88210 -15.56391 -15.49574 -15.34036 -14.95736 -14.71895 -14.66932 -14.35238 -14.11435 -13.96771 -13.79164 -13.71559 -13.35380 -12.98998 -12.96235 -12.81442 -12.73417 -12.72001 -12.67654 -12.60949 -12.37474 -12.27942 -12.07349 -11.95604 -11.84254 -11.53521 -11.43462 -11.28262 -11.24210 -10.88017 -10.36676 -9.98548 -9.72924 -9.17859 -8.91382 -8.28023 -6.38598 0.37878 1.03260 1.25841 1.37383 1.43322 1.53216 1.57449 2.28094 2.36197 2.51025 2.94828 3.37005 3.77017 3.79838 3.82968 3.99622 4.12088 4.28547 4.32512 4.33969 4.45519 4.59244 4.61670 4.66822 4.68633 4.77937 4.80120 4.85076 4.86829 4.93722 4.94806 4.95056 5.01982 5.07110 5.10645 5.12472 5.16635 5.22178 5.25011 5.31557 5.40349 5.47201 5.56028 5.62048 5.63430 5.71623 5.89260 5.97378 6.11721 6.25999 6.49308 6.72518 6.85183 7.01876 7.26629 8.21606 8.52219 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013607 B = 0.003091 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.229938 B = 9055.261787 C =10592.721238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 H 0.070 0.930 4 C 0.112 3.888 5 N -0.577 5.577 6 C 0.075 3.925 7 C 0.512 3.488 8 O -0.538 6.538 9 C 0.462 3.538 10 O -0.424 6.424 11 N -0.634 5.634 12 C 0.349 3.651 13 C -0.341 4.341 14 C -0.032 4.032 15 C -0.322 4.322 16 C 0.247 3.753 17 C -0.470 4.470 18 H 0.086 0.914 19 C 0.029 3.971 20 N -0.712 5.712 21 Si 0.975 3.025 22 H -0.262 1.262 23 H -0.262 1.262 24 H -0.271 1.271 25 N -0.511 5.511 26 C -0.057 4.057 27 C -0.145 4.145 28 C -0.141 4.141 29 C -0.144 4.144 30 H 0.021 0.979 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.423 0.577 39 H 0.129 0.871 40 H 0.139 0.861 41 H 0.108 0.892 42 H 0.279 0.721 43 H 0.050 0.950 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.065 0.935 48 H 0.052 0.948 49 H 0.061 0.939 50 H 0.064 0.936 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.878 -7.957 -15.551 18.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 H 0.088 0.912 4 C -0.009 4.009 5 N -0.309 5.309 6 C -0.067 4.067 7 C 0.295 3.705 8 O -0.417 6.417 9 C 0.241 3.759 10 O -0.290 6.290 11 N -0.284 5.284 12 C 0.111 3.889 13 C -0.367 4.367 14 C -0.057 4.057 15 C -0.345 4.345 16 C 0.121 3.879 17 C -0.500 4.500 18 H 0.104 0.896 19 C -0.196 4.196 20 N -0.332 5.332 21 Si 0.796 3.204 22 H -0.187 1.187 23 H -0.186 1.186 24 H -0.196 1.196 25 N -0.231 5.231 26 C -0.057 4.057 27 C -0.202 4.202 28 C -0.198 4.198 29 C -0.201 4.201 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.125 0.875 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.261 0.739 39 H 0.147 0.853 40 H 0.157 0.843 41 H 0.126 0.874 42 H 0.089 0.911 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.084 0.916 48 H 0.071 0.929 49 H 0.079 0.921 50 H 0.083 0.917 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.135 -7.737 -15.997 19.149 hybrid contribution -0.902 0.116 0.769 1.191 sum 6.233 -7.621 -15.228 18.133 Atomic orbital electron populations 1.21846 0.95755 1.01753 1.00108 1.21514 0.95639 0.99705 0.94074 0.91183 1.22067 1.01440 0.95363 0.82053 1.47762 1.17641 1.37561 1.27977 1.22255 0.94159 0.90989 0.99330 1.20029 0.82746 0.83651 0.84099 1.90682 1.51978 1.33276 1.65747 1.20767 0.83675 0.85072 0.86338 1.91027 1.48452 1.31026 1.58501 1.43030 1.16891 1.35292 1.33154 1.18907 0.90557 0.90668 0.88737 1.20952 0.96094 1.11520 1.08105 1.21053 0.98584 0.92545 0.93469 1.21875 0.96053 1.07962 1.08600 1.18784 0.91106 0.90248 0.87724 1.19810 1.03322 1.20582 1.06327 0.89582 1.26793 1.01124 0.96435 0.95259 1.70110 1.25713 1.28324 1.09013 0.85311 0.77054 0.78529 0.79468 1.18718 1.18570 1.19569 1.68363 1.33387 1.07308 1.14037 1.20470 0.96192 0.95408 0.93660 1.21978 1.01015 0.95184 1.02063 1.21904 1.01018 1.00160 0.96765 1.21956 0.93497 1.02222 1.02457 0.95974 0.92114 0.92340 0.87468 0.90022 0.92537 0.88693 0.90332 0.73872 0.85336 0.84319 0.87374 0.91084 0.93072 0.91643 0.92665 0.92736 0.91643 0.92882 0.92053 0.91651 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 7.24 71.98 0.52 -2.81 16 2 C -0.09 -1.78 1.96 -10.79 -0.02 -1.80 16 3 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 4 C 0.11 2.39 4.25 86.38 0.37 2.75 16 5 N -0.58 -16.40 2.76 -848.42 -2.34 -18.74 16 6 C 0.07 2.09 9.40 127.77 1.20 3.29 16 7 C 0.51 17.86 6.30 87.24 0.55 18.41 16 8 O -0.54 -19.04 14.33 -3.29 -0.05 -19.09 16 9 C 0.46 19.54 7.71 87.24 0.67 20.21 16 10 O -0.42 -20.38 9.72 -3.26 -0.03 -20.41 16 11 N -0.63 -26.70 5.37 -309.71 -1.66 -28.36 16 12 C 0.35 17.18 7.43 133.30 0.99 18.17 16 13 C -0.34 -14.94 9.95 22.72 0.23 -14.71 16 14 C -0.03 -1.41 10.15 22.40 0.23 -1.18 16 15 C -0.32 -16.04 9.83 22.87 0.22 -15.82 16 16 C 0.25 13.93 6.45 40.20 0.26 14.19 16 17 C -0.47 -25.92 9.11 23.47 0.21 -25.71 16 18 H 0.09 4.47 7.88 -2.91 -0.02 4.45 16 19 C 0.03 1.52 5.41 85.29 0.46 1.98 16 20 N -0.71 -38.27 10.06 21.84 0.22 -38.05 16 21 Si 0.98 38.89 29.58 68.60 2.03 40.92 16 22 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 23 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 24 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 25 N -0.51 -28.74 5.88 -186.42 -1.10 -29.83 16 26 C -0.06 -0.84 0.57 -52.18 -0.03 -0.87 16 27 C -0.15 -2.18 7.77 71.98 0.56 -1.62 16 28 C -0.14 -1.99 8.12 71.98 0.58 -1.40 16 29 C -0.14 -1.74 8.13 71.98 0.59 -1.15 16 30 H 0.02 0.66 6.07 -2.39 -0.01 0.64 16 31 H 0.06 1.31 6.43 -2.39 -0.02 1.30 16 32 H 0.06 1.46 6.30 -2.39 -0.02 1.45 16 33 H 0.11 1.75 6.10 -2.38 -0.01 1.74 16 34 H 0.08 1.90 5.98 -2.39 -0.01 1.88 16 35 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.09 1.95 8.02 -2.39 -0.02 1.93 16 37 H 0.08 2.83 5.60 -2.39 -0.01 2.82 16 38 H 0.42 15.11 8.18 -92.71 -0.76 14.36 16 39 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 40 H 0.14 4.82 8.06 -2.91 -0.02 4.80 16 41 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 42 H 0.28 13.68 8.29 -92.71 -0.77 12.92 16 43 H 0.05 0.87 6.43 -2.39 -0.02 0.86 16 44 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.05 0.85 6.54 -2.39 -0.02 0.83 16 46 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.05 0.81 6.43 -2.38 -0.02 0.80 16 49 H 0.06 0.70 6.32 -2.38 -0.02 0.68 16 50 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 51 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -67.31 394.54 4.86 -62.45 By element: Atomic # 1 Polarization: 38.96 SS G_CDS: 0.20 Total: 39.16 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 7.59 Total: 11.95 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -4.88 Total: -114.98 kcal Atomic # 8 Polarization: -39.42 SS G_CDS: -0.08 Total: -39.50 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Total: -67.31 4.86 -62.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890440964.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.264 kcal (2) G-P(sol) polarization free energy of solvation -67.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds