Wall clock time and date at job start Wed Apr 1 2020 04:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47111 * 2 1 4 4 N 1.46504 * 109.47073 * 119.99045 * 2 1 3 5 5 C 1.34772 * 120.00425 * 278.87842 * 4 2 1 6 6 O 1.21598 * 120.00066 * 359.97438 * 5 4 2 7 7 C 1.47539 * 120.00069 * 179.97438 * 5 4 2 8 8 C 1.39661 * 120.19635 * 359.72261 * 7 5 4 9 9 C 1.37834 * 119.91821 * 179.72336 * 8 7 5 10 10 C 1.38568 * 120.32139 * 0.57503 * 9 8 7 11 11 C 1.38033 * 120.40143 * 359.69919 * 10 9 8 12 12 C 1.38832 * 120.07266 * 359.97438 * 11 10 9 13 13 O 1.35512 * 120.15843 * 180.02562 * 12 11 10 14 14 C 1.34809 * 117.00346 * 354.55448 * 13 12 11 15 15 H 1.08001 * 120.00098 * 5.06214 * 14 13 12 16 16 C 1.38703 * 120.00056 * 185.07029 * 14 13 12 17 17 N 1.31518 * 119.99947 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00119 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46845 * 90.00301 * 18 16 14 20 20 H 1.48495 * 109.47081 * 210.00532 * 18 16 14 21 21 H 1.48498 * 109.46759 * 330.00200 * 18 16 14 22 22 C 1.52998 * 109.47708 * 239.99471 * 2 1 3 23 23 H 1.09001 * 109.50787 * 177.59196 * 22 2 1 24 24 C 1.53047 * 109.48716 * 297.64667 * 22 2 1 25 25 N 1.46957 * 109.36257 * 178.36498 * 24 22 2 26 26 C 1.46907 * 111.00060 * 176.81111 * 25 24 22 27 27 C 1.46957 * 110.88148 * 300.68042 * 25 24 22 28 28 C 1.53047 * 109.36572 * 59.32145 * 27 25 24 29 29 N 1.46957 * 109.48712 * 57.53697 * 22 2 1 30 30 C 1.46897 * 111.00006 * 56.84476 * 29 22 2 31 31 H 1.09003 * 109.47111 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47587 * 300.00888 * 1 2 3 33 33 H 1.09008 * 109.46484 * 60.00548 * 1 2 3 34 34 H 0.97008 * 119.99401 * 98.87048 * 4 2 1 35 35 H 1.08007 * 120.04059 * 359.97438 * 8 7 5 36 36 H 1.08003 * 119.83683 * 180.27256 * 9 8 7 37 37 H 1.07995 * 119.80052 * 179.71681 * 10 9 8 38 38 H 1.08000 * 119.96053 * 180.02562 * 11 10 9 39 39 H 0.96999 * 120.00608 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.49004 * 58.40216 * 24 22 2 41 41 H 1.08996 * 109.50943 * 298.34452 * 24 22 2 42 42 H 1.08994 * 109.47283 * 179.84399 * 26 25 24 43 43 H 1.08997 * 109.46834 * 299.85233 * 26 25 24 44 44 H 1.09003 * 109.46640 * 59.84508 * 26 25 24 45 45 H 1.09001 * 109.48980 * 299.35220 * 27 25 24 46 46 H 1.08996 * 109.50692 * 179.29949 * 27 25 24 47 47 H 1.08993 * 109.49051 * 181.63375 * 28 27 25 48 48 H 1.08998 * 109.50625 * 61.57432 * 28 27 25 49 49 H 1.09002 * 109.47549 * 177.20314 * 30 29 22 50 50 H 1.09009 * 109.47419 * 57.20584 * 30 29 22 51 51 H 1.09001 * 109.47674 * 297.20787 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6904 1.1963 5 6 2.0731 -0.0393 2.3751 6 8 1.7177 1.1214 2.4456 7 6 2.5644 -0.7349 3.5799 8 6 2.9682 -2.0697 3.5048 9 6 3.4316 -2.7123 4.6328 10 6 3.4880 -2.0438 5.8452 11 6 3.0869 -0.7261 5.9358 12 6 2.6237 -0.0609 4.8086 13 8 2.2300 1.2328 4.8954 14 6 2.2054 1.7840 6.1254 15 1 2.5690 1.2250 6.9750 16 6 1.7131 3.0689 6.3000 17 7 1.6886 3.6064 7.5001 18 14 1.0846 4.0360 4.8305 19 1 -0.3653 3.7723 4.6479 20 1 1.2985 5.4867 5.0646 21 1 1.8213 3.6175 3.6109 22 6 2.0401 -0.7213 -1.2491 23 1 3.1293 -0.6844 -1.2715 24 6 1.5792 -2.1805 -1.2201 25 7 2.0373 -2.8605 -2.4397 26 6 1.6790 -4.2849 -2.4145 27 6 1.4997 -2.2033 -3.6392 28 6 1.9606 -0.7442 -3.6682 29 7 1.5025 -0.0642 -2.4486 30 6 1.8609 1.3602 -2.4739 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8898 33 1 -0.3632 0.5138 -0.8901 34 1 2.3021 -1.6164 1.1400 35 1 2.9213 -2.5967 2.5632 36 1 3.7477 -3.7432 4.5722 37 1 3.8482 -2.5568 6.7247 38 1 3.1342 -0.2119 6.8843 39 1 1.3447 4.5050 7.6222 40 1 0.4910 -2.2171 -1.1703 41 1 2.0002 -2.6779 -0.3464 42 1 2.0272 -4.7635 -3.3297 43 1 2.1475 -4.7622 -1.5538 44 1 0.5961 -4.3858 -2.3410 45 1 0.4105 -2.2403 -3.6168 46 1 1.8627 -2.7171 -4.5293 47 1 1.5393 -0.2470 -4.5418 48 1 3.0488 -0.7072 -3.7182 49 1 1.4933 1.8111 -3.3956 50 1 2.9450 1.4631 -2.4263 51 1 1.4104 1.8635 -1.6184 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896568523.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:20 Heat of formation + Delta-G solvation = -7.477549 kcal Electronic energy + Delta-G solvation = -31799.333466 eV Core-core repulsion = 27700.162435 eV Total energy + Delta-G solvation = -4099.171031 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.40045 -39.55220 -38.21580 -36.53898 -36.08040 -34.86991 -32.44945 -31.86461 -30.35953 -29.48211 -29.20071 -28.84185 -25.67286 -25.34694 -24.80462 -23.70951 -22.99357 -21.69261 -21.01445 -20.09355 -19.34134 -17.91068 -17.89265 -16.57374 -16.39560 -15.93957 -15.57652 -15.20654 -14.97214 -14.94500 -14.65275 -14.39196 -14.29917 -14.16398 -14.08347 -13.75159 -13.54167 -13.22993 -12.87791 -12.77386 -12.72309 -12.36131 -12.29695 -12.16670 -12.01330 -11.93408 -11.85285 -11.55935 -11.40776 -11.26996 -11.15549 -11.08387 -10.84209 -10.72007 -10.45298 -10.04411 -9.61032 -9.04381 -8.88788 -8.75305 -8.73405 -8.54397 -8.37698 -7.47564 -6.46724 -4.11742 1.58055 2.19108 3.28300 3.32217 3.38568 3.53871 3.60872 3.66825 3.84455 4.36023 4.45301 4.51958 4.60540 4.67706 4.74005 4.89382 4.95892 5.00649 5.09617 5.17034 5.18222 5.21681 5.30065 5.33318 5.37237 5.38664 5.44465 5.52151 5.54697 5.57401 5.62203 5.65250 5.76441 5.81575 5.90177 6.00589 6.04429 6.16463 6.37865 6.42681 6.55365 6.57843 6.60626 6.76169 6.81992 6.83083 6.89990 7.01444 7.15048 7.48240 7.68055 7.94690 7.96174 8.86758 8.90783 9.52262 10.58420 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012678 B = 0.003286 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.967637 B = 8519.227043 C =10408.821016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.153 3.847 3 H 0.088 0.912 4 N -0.737 5.737 5 C 0.563 3.437 6 O -0.516 6.516 7 C -0.226 4.226 8 C -0.041 4.041 9 C -0.221 4.221 10 C -0.051 4.051 11 C -0.227 4.227 12 C 0.202 3.798 13 O -0.165 6.165 14 C -0.396 4.396 15 H 0.108 0.892 16 C 0.072 3.928 17 N -0.870 5.870 18 Si 0.900 3.100 19 H -0.274 1.274 20 H -0.287 1.287 21 H -0.238 1.238 22 C 0.082 3.918 23 H 0.056 0.944 24 C 0.059 3.941 25 N -0.546 5.546 26 C 0.025 3.975 27 C 0.056 3.944 28 C 0.057 3.943 29 N -0.533 5.533 30 C 0.017 3.983 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.391 0.609 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.138 0.862 39 H 0.282 0.718 40 H 0.053 0.947 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.027 0.973 45 H 0.043 0.957 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.043 0.957 49 H 0.069 0.931 50 H 0.029 0.971 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.555 -13.708 -20.773 24.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.047 3.953 3 H 0.105 0.895 4 N -0.393 5.393 5 C 0.353 3.647 6 O -0.392 6.392 7 C -0.231 4.231 8 C -0.059 4.059 9 C -0.240 4.240 10 C -0.069 4.069 11 C -0.246 4.246 12 C 0.144 3.856 13 O -0.065 6.065 14 C -0.471 4.471 15 H 0.125 0.875 16 C -0.134 4.134 17 N -0.506 5.506 18 Si 0.725 3.275 19 H -0.199 1.199 20 H -0.213 1.213 21 H -0.161 1.161 22 C -0.027 4.027 23 H 0.074 0.926 24 C -0.070 4.070 25 N -0.270 5.270 26 C -0.123 4.123 27 C -0.072 4.072 28 C -0.071 4.071 29 N -0.258 5.258 30 C -0.131 4.131 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.227 0.773 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.156 0.844 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.045 0.955 45 H 0.061 0.939 46 H 0.097 0.903 47 H 0.099 0.901 48 H 0.061 0.939 49 H 0.088 0.912 50 H 0.047 0.953 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.158 -12.431 -20.748 24.187 hybrid contribution -0.067 -0.123 -0.281 0.314 sum 0.091 -12.554 -21.029 24.491 Atomic orbital electron populations 1.22114 0.94736 1.01860 1.02632 1.20778 0.94932 0.96901 0.82648 0.89456 1.46006 1.69214 1.15774 1.08355 1.18170 0.77744 0.86272 0.82495 1.90852 1.47217 1.16231 1.84904 1.18858 1.16845 0.95084 0.92300 1.20746 0.95326 0.92235 0.97636 1.20534 1.10140 1.00047 0.93284 1.20962 0.95233 0.93762 0.96988 1.21290 1.07809 0.95903 0.99624 1.19015 0.90533 0.84097 0.91971 1.83776 1.71441 1.19444 1.31854 1.20925 1.43141 1.00065 0.82993 0.87467 1.24495 0.95207 0.95964 0.97716 1.69637 1.43204 1.16397 1.21345 0.86195 0.80376 0.77386 0.83530 1.19941 1.21295 1.16093 1.21850 0.97699 0.93129 0.90042 0.92593 1.22269 0.99197 0.93047 0.92438 1.62137 1.59691 1.02734 1.02463 1.22355 0.98799 0.88312 1.02868 1.22176 0.98026 0.93979 0.93044 1.22168 0.98626 0.93658 0.92658 1.62098 1.59389 1.02781 1.01533 1.22482 0.99095 0.88223 1.03265 0.92904 0.92085 0.91018 0.77288 0.87017 0.87028 0.86849 0.84436 0.90838 0.92934 0.90400 0.91348 0.91134 0.95477 0.93863 0.90312 0.90055 0.93918 0.91221 0.95275 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 8.88 37.16 0.33 -1.75 16 2 C 0.15 2.07 1.84 -67.93 -0.12 1.94 16 3 H 0.09 1.37 6.12 -51.93 -0.32 1.05 16 4 N -0.74 -10.90 4.96 -54.84 -0.27 -11.17 16 5 C 0.56 11.30 7.68 -12.47 -0.10 11.20 16 6 O -0.52 -12.67 14.68 -16.57 -0.24 -12.91 16 7 C -0.23 -4.57 5.89 -104.81 -0.62 -5.18 16 8 C -0.04 -0.65 9.53 -39.20 -0.37 -1.02 16 9 C -0.22 -3.41 10.02 -39.61 -0.40 -3.81 16 10 C -0.05 -0.87 10.03 -39.53 -0.40 -1.26 16 11 C -0.23 -4.79 9.16 -39.44 -0.36 -5.15 16 12 C 0.20 4.75 6.66 -38.60 -0.26 4.50 16 13 O -0.17 -4.54 6.67 -21.02 -0.14 -4.68 16 14 C -0.40 -11.35 9.95 30.90 0.31 -11.04 16 15 H 0.11 3.06 5.44 -52.49 -0.29 2.77 16 16 C 0.07 2.07 5.49 -17.51 -0.10 1.97 16 17 N -0.87 -25.37 13.96 55.48 0.77 -24.59 16 18 Si 0.90 23.26 28.62 -169.99 -4.86 18.40 16 19 H -0.27 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.24 -6.47 7.11 56.52 0.40 -6.07 16 22 C 0.08 0.90 1.95 -67.66 -0.13 0.77 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 C 0.06 0.57 4.42 -3.77 -0.02 0.55 16 25 N -0.55 -4.88 4.97 -242.76 -1.21 -6.08 16 26 C 0.02 0.18 9.60 60.07 0.58 0.75 16 27 C 0.06 0.45 5.62 -3.77 -0.02 0.43 16 28 C 0.06 0.48 5.62 -3.77 -0.02 0.46 16 29 N -0.53 -5.30 3.93 -234.73 -0.92 -6.23 16 30 C 0.02 0.17 8.92 60.06 0.54 0.70 16 31 H 0.05 0.65 6.45 -51.93 -0.34 0.31 16 32 H 0.06 1.00 7.92 -51.93 -0.41 0.59 16 33 H 0.07 0.89 7.22 -51.92 -0.38 0.52 16 34 H 0.39 4.70 4.80 -40.82 -0.20 4.51 16 35 H 0.11 1.34 6.40 -52.48 -0.34 1.01 16 36 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 38 H 0.14 3.01 5.64 -52.49 -0.30 2.72 16 39 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.05 0.55 6.41 -51.93 -0.33 0.21 16 41 H 0.08 0.71 6.48 -51.93 -0.34 0.38 16 42 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.08 0.51 8.13 -51.93 -0.42 0.09 16 47 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 48 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 50 H 0.03 0.28 8.14 -51.92 -0.42 -0.14 16 51 H 0.08 0.84 6.22 -51.93 -0.32 0.52 16 LS Contribution 395.19 15.07 5.96 5.96 Total: -1.00 -32.65 395.19 -9.83 -42.48 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -7.75 Total: 4.79 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -1.16 Total: -5.96 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -1.63 Total: -48.07 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.38 Total: -17.59 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -4.86 Total: 18.40 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.65 -9.83 -42.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896568523.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.002 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds