Wall clock time and date at job start Wed Apr 1 2020 04:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47412 * 2 1 4 4 N 1.46501 * 109.47140 * 119.99896 * 2 1 3 5 5 S 1.65599 * 119.99918 * 239.92820 * 4 2 1 6 6 O 1.42106 * 104.27761 * 181.06837 * 5 4 2 7 7 O 1.42098 * 104.27931 * 308.92534 * 5 4 2 8 8 C 1.81395 * 104.45051 * 64.99914 * 5 4 2 9 9 C 1.52999 * 109.47262 * 180.02562 * 8 5 4 10 10 C 1.53008 * 109.47034 * 299.99884 * 9 8 5 11 11 C 1.52997 * 109.47290 * 59.99645 * 9 8 5 12 12 C 1.50702 * 109.47373 * 179.97438 * 9 8 5 13 13 H 1.07999 * 119.99900 * 359.97438 * 12 9 8 14 14 C 1.37875 * 119.99958 * 179.97438 * 12 9 8 15 15 N 1.31517 * 120.00401 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 119.99826 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.47437 * 359.97438 * 16 14 12 18 18 H 1.48507 * 109.46964 * 119.99696 * 16 14 12 19 19 H 1.48493 * 109.47249 * 239.99765 * 16 14 12 20 20 C 1.53000 * 109.47192 * 239.99711 * 2 1 3 21 21 H 1.09006 * 109.50648 * 176.46118 * 20 2 1 22 22 C 1.53046 * 109.49181 * 296.51490 * 20 2 1 23 23 N 1.46952 * 109.36899 * 178.36953 * 22 20 2 24 24 C 1.46894 * 111.00361 * 176.81522 * 23 22 20 25 25 C 1.46960 * 110.88058 * 300.68574 * 23 22 20 26 26 C 1.53046 * 109.36709 * 59.31313 * 25 23 22 27 27 N 1.46952 * 109.36899 * 301.60348 * 26 25 23 28 28 C 1.46894 * 111.00361 * 183.18478 * 27 26 25 29 29 H 1.08996 * 109.47676 * 300.00316 * 1 2 3 30 30 H 1.08998 * 109.47087 * 60.00750 * 1 2 3 31 31 H 1.09003 * 109.47412 * 180.02562 * 1 2 3 32 32 H 0.97003 * 119.99927 * 59.92613 * 4 2 1 33 33 H 1.08999 * 109.47065 * 299.99832 * 8 5 4 34 34 H 1.08993 * 109.47588 * 59.99727 * 8 5 4 35 35 H 1.08996 * 109.46912 * 59.99956 * 10 9 8 36 36 H 1.09000 * 109.46926 * 180.02562 * 10 9 8 37 37 H 1.09002 * 109.46588 * 299.99938 * 10 9 8 38 38 H 1.08999 * 109.47122 * 60.00371 * 11 9 8 39 39 H 1.09009 * 109.47344 * 180.02562 * 11 9 8 40 40 H 1.09002 * 109.47207 * 299.99995 * 11 9 8 41 41 H 0.96995 * 120.00266 * 180.02562 * 15 14 12 42 42 H 1.09002 * 109.49152 * 298.33881 * 22 20 2 43 43 H 1.09008 * 109.48666 * 58.40200 * 22 20 2 44 44 H 1.09004 * 109.47179 * 59.99898 * 24 23 22 45 45 H 1.09007 * 109.47361 * 180.02562 * 24 23 22 46 46 H 1.09001 * 109.47134 * 299.99878 * 24 23 22 47 47 H 1.08994 * 109.49261 * 179.28869 * 25 23 22 48 48 H 1.09003 * 109.48421 * 299.33131 * 25 23 22 49 49 H 1.09002 * 109.49152 * 181.63420 * 26 25 23 50 50 H 1.09008 * 109.48666 * 61.57100 * 26 25 23 51 51 H 1.09008 * 109.47394 * 290.14447 * 28 27 26 52 52 H 1.08998 * 109.47521 * 170.14963 * 28 27 26 53 53 H 1.08999 * 109.47080 * 50.14738 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 2.9718 0.1137 2.2853 6 8 3.2668 -0.8591 3.2783 7 8 4.0023 0.6871 1.4926 8 6 1.8946 1.4071 2.9615 9 6 2.6703 2.2296 3.9923 10 6 3.1416 1.3147 5.1247 11 6 3.8835 2.8759 3.3206 12 6 1.7756 3.3045 4.5537 13 1 0.7558 3.3925 4.2094 14 6 2.2590 4.1756 5.5069 15 7 3.5008 4.0681 5.9266 16 14 1.1501 5.5084 6.2021 17 1 -0.1901 5.4174 5.5692 18 1 1.0182 5.3266 7.6701 19 1 1.7409 6.8411 5.9195 20 6 2.0399 -0.7213 -1.2492 21 1 3.1282 -0.6670 -1.2820 22 6 1.6029 -2.1874 -1.2065 23 7 2.0606 -2.8681 -2.4258 24 6 1.7254 -4.2978 -2.3881 25 6 1.5014 -2.2276 -3.6245 26 6 1.9385 -0.7615 -3.6672 27 7 1.4808 -0.0808 -2.4479 28 6 1.8160 1.3489 -2.4857 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.7830 -1.6190 1.3502 33 1 1.5592 2.0591 2.1550 34 1 1.0301 0.9467 3.4397 35 1 3.7889 0.5376 4.7183 36 1 3.6939 1.9008 5.8592 37 1 2.2772 0.8543 5.6032 38 1 3.5479 3.5277 2.5140 39 1 4.4365 3.4616 4.0551 40 1 4.5308 2.0987 2.9143 41 1 3.8407 4.6807 6.5974 42 1 2.0403 -2.6721 -0.3336 43 1 0.5158 -2.2412 -1.1462 44 1 0.6448 -4.4157 -2.3066 45 1 2.0758 -4.7774 -3.3021 46 1 2.2074 -4.7613 -1.5273 47 1 1.8647 -2.7414 -4.5144 48 1 0.4133 -2.2821 -3.5918 49 1 1.5011 -0.2768 -4.5401 50 1 3.0255 -0.7077 -3.7275 51 1 2.8949 1.4719 -2.3906 52 1 1.3181 1.8607 -1.6621 53 1 1.4837 1.7751 -3.4323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919982823.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:25 Heat of formation + Delta-G solvation = -79.731157 kcal Electronic energy + Delta-G solvation = -31418.501546 eV Core-core repulsion = 27451.641315 eV Total energy + Delta-G solvation = -3966.860231 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.87841 -38.15184 -38.12648 -37.41872 -36.88676 -36.08483 -33.63059 -31.98806 -30.17130 -29.76341 -28.31505 -27.69249 -27.24209 -26.30325 -25.50072 -23.99734 -22.37473 -21.40598 -20.51603 -20.06830 -18.89964 -17.89309 -17.54862 -17.01071 -16.80746 -16.63255 -16.43302 -16.27932 -15.84950 -15.59755 -15.26491 -15.06567 -14.90651 -14.65689 -14.42604 -14.33956 -14.03170 -13.82528 -13.55062 -13.34360 -13.09562 -13.04861 -12.96263 -12.90490 -12.76016 -12.74850 -12.62802 -12.57348 -12.49995 -12.28319 -12.19074 -12.14574 -12.09218 -11.89855 -11.75776 -11.56994 -11.39220 -11.38249 -10.69289 -10.41822 -10.37113 -9.42843 -9.24315 -8.02440 -6.20961 -0.62025 1.43654 1.46875 1.56322 1.85251 2.44849 2.85084 2.89632 2.94230 3.20086 3.34009 3.60272 3.86597 3.92469 4.01820 4.14162 4.16940 4.20092 4.31789 4.35416 4.39708 4.53805 4.56943 4.60036 4.61435 4.65061 4.72559 4.77555 4.85332 4.86949 4.89010 4.95515 4.98694 5.02158 5.03776 5.07610 5.08146 5.10119 5.28426 5.39023 5.45629 5.50821 5.65713 5.89951 5.94599 5.97316 6.09968 6.11959 6.12614 6.18189 6.34571 6.84340 7.47526 8.97675 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019604 B = 0.002993 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.961606 B = 9352.511348 C = 9937.098590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.151 3.849 3 H 0.084 0.916 4 N -1.107 6.107 5 S 2.610 3.390 6 O -0.993 6.993 7 O -0.992 6.992 8 C -0.583 4.583 9 C 0.070 3.930 10 C -0.161 4.161 11 C -0.159 4.159 12 C -0.515 4.515 13 H 0.065 0.935 14 C 0.017 3.983 15 N -0.909 5.909 16 Si 0.954 3.046 17 H -0.264 1.264 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.081 3.919 21 H 0.029 0.971 22 C 0.062 3.938 23 N -0.565 5.565 24 C 0.026 3.974 25 C 0.059 3.941 26 C 0.053 3.947 27 N -0.530 5.530 28 C 0.011 3.989 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.422 0.578 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.030 0.970 36 H 0.071 0.929 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.070 0.930 40 H 0.031 0.969 41 H 0.261 0.739 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.033 0.967 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.093 0.907 48 H 0.046 0.954 49 H 0.102 0.898 50 H 0.028 0.972 51 H 0.017 0.983 52 H 0.076 0.924 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.670 -11.979 -19.654 24.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.043 3.957 3 H 0.102 0.898 4 N -0.867 5.867 5 S 2.708 3.292 6 O -0.983 6.983 7 O -0.981 6.981 8 C -0.716 4.716 9 C 0.068 3.932 10 C -0.219 4.219 11 C -0.217 4.217 12 C -0.554 4.554 13 H 0.083 0.917 14 C -0.183 4.183 15 N -0.548 5.548 16 Si 0.781 3.219 17 H -0.188 1.188 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.030 4.030 21 H 0.047 0.953 22 C -0.066 4.066 23 N -0.290 5.290 24 C -0.122 4.122 25 C -0.069 4.069 26 C -0.075 4.075 27 N -0.255 5.255 28 C -0.137 4.137 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.258 0.742 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.049 0.951 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.077 0.923 44 H 0.051 0.949 45 H 0.097 0.903 46 H 0.086 0.914 47 H 0.111 0.889 48 H 0.064 0.936 49 H 0.120 0.880 50 H 0.047 0.953 51 H 0.036 0.964 52 H 0.095 0.905 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.575 -11.960 -19.406 24.021 hybrid contribution -0.566 0.772 0.882 1.302 sum -8.141 -11.188 -18.525 23.121 Atomic orbital electron populations 1.22159 0.92008 1.03691 1.03427 1.20873 0.96765 0.95263 0.82827 0.89779 1.55501 1.71559 1.24572 1.35092 1.04836 0.75626 0.75539 0.73222 1.93507 1.84086 1.59806 1.60904 1.93511 1.55168 1.80186 1.69269 1.30458 1.14737 1.15599 1.10760 1.17916 0.92506 0.92807 0.89973 1.22219 1.00264 0.97665 1.01735 1.22201 0.98901 1.00680 0.99917 1.21331 0.98041 1.13742 1.22265 0.91657 1.25687 0.96276 0.99515 0.96792 1.69955 1.15726 1.38229 1.30855 0.85559 0.79443 0.78987 0.77948 1.18769 1.21092 1.21049 1.21898 0.96377 0.94394 0.90302 0.95253 1.22194 0.99153 0.92331 0.92949 1.62103 1.60311 1.03865 1.02755 1.22377 0.99249 0.87143 1.03398 1.22209 0.97894 0.93740 0.93078 1.22284 0.98123 0.94255 0.92797 1.62237 1.58576 1.03074 1.01637 1.22570 0.98821 0.88118 1.04177 0.91815 0.89434 0.91047 0.74152 0.84502 0.84213 0.95096 0.91061 0.94015 0.94024 0.91148 0.95058 0.92982 0.90560 0.92337 0.94853 0.90264 0.91419 0.88919 0.93583 0.87979 0.95327 0.96424 0.90547 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.94 71.98 0.64 -2.06 16 2 C 0.15 3.40 2.09 44.99 0.09 3.50 16 3 H 0.08 2.06 6.24 -2.39 -0.01 2.04 16 4 N -1.11 -28.21 5.01 -169.39 -0.85 -29.06 16 5 S 2.61 93.99 4.36 -56.49 -0.25 93.75 16 6 O -0.99 -41.18 15.70 -127.65 -2.00 -43.18 16 7 O -0.99 -41.42 15.26 -127.65 -1.95 -43.37 16 8 C -0.58 -21.51 5.01 71.98 0.36 -21.14 16 9 C 0.07 3.34 0.52 -52.93 -0.03 3.32 16 10 C -0.16 -8.01 7.78 71.98 0.56 -7.45 16 11 C -0.16 -7.88 7.77 71.98 0.56 -7.32 16 12 C -0.51 -26.43 8.01 25.60 0.21 -26.22 16 13 H 0.07 3.20 7.74 -2.91 -0.02 3.18 16 14 C 0.02 0.87 5.15 84.65 0.44 1.31 16 15 N -0.91 -50.25 9.35 21.45 0.20 -50.05 16 16 Si 0.95 41.80 29.54 68.60 2.03 43.83 16 17 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 C 0.08 1.82 1.98 44.92 0.09 1.90 16 21 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 22 C 0.06 1.20 4.33 86.31 0.37 1.58 16 23 N -0.57 -10.32 4.97 -921.95 -4.58 -14.90 16 24 C 0.03 0.36 9.60 127.69 1.23 1.59 16 25 C 0.06 0.87 5.62 86.31 0.49 1.36 16 26 C 0.05 0.86 5.61 86.31 0.48 1.35 16 27 N -0.53 -9.88 3.90 -896.56 -3.50 -13.38 16 28 C 0.01 0.20 8.81 127.69 1.12 1.32 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.09 1.42 7.01 -2.39 -0.02 1.40 16 31 H 0.07 1.09 6.49 -2.39 -0.02 1.08 16 32 H 0.42 8.94 7.55 -96.74 -0.73 8.21 16 33 H 0.14 4.43 8.14 -2.39 -0.02 4.41 16 34 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 35 H 0.03 1.47 5.46 -2.39 -0.01 1.46 16 36 H 0.07 3.88 6.07 -2.39 -0.01 3.86 16 37 H 0.04 1.95 8.14 -2.39 -0.02 1.94 16 38 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.07 3.82 6.07 -2.38 -0.01 3.81 16 40 H 0.03 1.49 5.46 -2.39 -0.01 1.47 16 41 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 42 H 0.08 1.50 6.87 -2.39 -0.02 1.49 16 43 H 0.06 1.02 6.45 -2.38 -0.02 1.00 16 44 H 0.03 0.41 8.14 -2.38 -0.02 0.39 16 45 H 0.08 0.90 8.13 -2.38 -0.02 0.88 16 46 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.09 1.09 8.13 -2.39 -0.02 1.07 16 48 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.10 1.21 8.07 -2.39 -0.02 1.20 16 50 H 0.03 0.55 8.14 -2.38 -0.02 0.53 16 51 H 0.02 0.37 8.12 -2.38 -0.02 0.35 16 52 H 0.08 1.35 6.27 -2.39 -0.01 1.34 16 53 H 0.09 1.23 8.03 -2.39 -0.02 1.21 16 Total: -1.00 -67.67 398.54 -4.13 -71.79 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: 0.16 Total: 31.55 kcal Atomic # 6 Polarization: -53.60 SS G_CDS: 6.61 Total: -46.98 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -8.72 Total: -107.39 kcal Atomic # 8 Polarization: -82.60 SS G_CDS: -3.95 Total: -86.55 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Atomic # 16 Polarization: 93.99 SS G_CDS: -0.25 Total: 93.75 kcal Total: -67.67 -4.13 -71.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919982823.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.939 kcal (2) G-P(sol) polarization free energy of solvation -67.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds