Wall clock time and date at job start Wed Apr 1 2020 04:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47268 * 2 1 4 4 N 1.46506 * 109.47267 * 120.00236 * 2 1 3 5 5 S 1.65598 * 119.99756 * 265.00069 * 4 2 1 6 6 O 1.42097 * 104.27774 * 308.92752 * 5 4 2 7 7 O 1.42102 * 104.27255 * 181.06761 * 5 4 2 8 8 C 1.81401 * 104.45129 * 65.00157 * 5 4 2 9 9 C 1.52995 * 109.46989 * 179.97438 * 8 5 4 10 10 C 1.53002 * 109.47432 * 59.99807 * 9 8 5 11 11 C 1.52995 * 109.47247 * 299.99370 * 9 8 5 12 12 C 1.50703 * 109.46725 * 179.97438 * 9 8 5 13 13 H 1.07994 * 120.00386 * 0.02562 * 12 9 8 14 14 C 1.37881 * 119.99679 * 179.97438 * 12 9 8 15 15 N 1.31513 * 120.00325 * 0.02562 * 14 12 9 16 16 Si 1.86798 * 119.99989 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.47065 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47189 * 119.99802 * 16 14 12 19 19 H 1.48501 * 109.47257 * 240.00172 * 16 14 12 20 20 C 1.53001 * 109.46816 * 240.00199 * 2 1 3 21 21 H 1.08995 * 109.49185 * 57.67801 * 20 2 1 22 22 C 1.53052 * 109.48885 * 297.60593 * 20 2 1 23 23 N 1.46957 * 109.36210 * 181.63201 * 22 20 2 24 24 C 1.46894 * 111.00087 * 183.19040 * 23 22 20 25 25 C 1.46958 * 110.87916 * 59.32589 * 23 22 20 26 26 C 1.53048 * 109.36488 * 300.67602 * 25 23 22 27 27 N 1.46958 * 109.36386 * 58.40028 * 26 25 23 28 28 C 1.46900 * 110.99968 * 176.81172 * 27 26 25 29 29 H 1.09004 * 109.47191 * 297.58957 * 1 2 3 30 30 H 1.08997 * 109.47406 * 57.59448 * 1 2 3 31 31 H 1.09007 * 109.46860 * 177.59454 * 1 2 3 32 32 H 0.96997 * 119.99559 * 84.99622 * 4 2 1 33 33 H 1.09001 * 109.47467 * 59.99490 * 8 5 4 34 34 H 1.09007 * 109.46665 * 299.99936 * 8 5 4 35 35 H 1.08994 * 109.46944 * 179.97438 * 10 9 8 36 36 H 1.09004 * 109.46520 * 59.99685 * 10 9 8 37 37 H 1.08996 * 109.46877 * 300.00375 * 10 9 8 38 38 H 1.08995 * 109.47505 * 179.97438 * 11 9 8 39 39 H 1.09003 * 109.47578 * 300.00479 * 11 9 8 40 40 H 1.09009 * 109.46672 * 60.00255 * 11 9 8 41 41 H 0.96996 * 120.00520 * 180.02562 * 15 14 12 42 42 H 1.08993 * 109.48989 * 301.60348 * 22 20 2 43 43 H 1.08998 * 109.48580 * 61.67044 * 22 20 2 44 44 H 1.09007 * 109.47329 * 300.15806 * 24 23 22 45 45 H 1.09006 * 109.47214 * 60.15767 * 24 23 22 46 46 H 1.08997 * 109.47474 * 180.15486 * 24 23 22 47 47 H 1.09000 * 109.49003 * 180.71121 * 25 23 22 48 48 H 1.08999 * 109.50876 * 60.65912 * 25 23 22 49 49 H 1.09004 * 109.49108 * 298.43242 * 26 25 23 50 50 H 1.09000 * 109.51266 * 178.37986 * 26 25 23 51 51 H 1.09002 * 109.47078 * 190.67946 * 28 27 26 52 52 H 1.09001 * 109.47228 * 310.67632 * 28 27 26 53 53 H 1.08997 * 109.46947 * 70.68083 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1962 5 16 2.4122 0.1771 2.5505 6 8 3.2875 1.1906 2.0751 7 8 2.8606 -0.8031 3.4765 8 6 0.8408 0.8988 3.0986 9 6 1.0752 1.7338 4.3589 10 6 2.0709 2.8539 4.0508 11 6 1.6392 0.8401 5.4653 12 6 -0.2302 2.3338 4.8139 13 1 -1.1364 2.1387 4.2598 14 6 -0.2678 3.1311 5.9382 15 7 0.8357 3.3683 6.6133 16 14 -1.8859 3.8743 6.5026 17 1 -2.9710 3.4575 5.5784 18 1 -2.1963 3.4003 7.8753 19 1 -1.7771 5.3553 6.5030 20 6 2.0399 -0.7212 -1.2493 21 1 1.6432 -0.2322 -2.1389 22 6 1.5798 -2.1806 -1.2200 23 7 2.1037 -2.8805 -2.4012 24 6 1.6207 -4.2670 -2.4488 25 6 3.5722 -2.8332 -2.4294 26 6 4.0325 -1.3739 -2.4587 27 7 3.5085 -0.6739 -1.2776 28 6 3.9915 0.7126 -1.2300 29 1 -0.3634 0.4760 0.9108 30 1 -0.3634 0.5507 -0.8676 31 1 -0.3633 -1.0268 -0.0431 32 1 2.1110 -1.6562 1.1948 33 1 0.1316 0.1008 3.3185 34 1 0.4387 1.5351 2.3101 35 1 2.2375 3.4490 4.9486 36 1 1.6689 3.4906 3.2626 37 1 3.0151 2.4203 3.7214 38 1 1.8067 1.4351 6.3630 39 1 0.9299 0.0421 5.6848 40 1 2.5835 0.4064 5.1359 41 1 0.8092 3.9289 7.4044 42 1 1.9539 -2.6618 -0.3164 43 1 0.4905 -2.2186 -1.2282 44 1 1.9463 -4.7962 -1.5532 45 1 0.5318 -4.2710 -2.4975 46 1 2.0256 -4.7627 -3.3311 47 1 3.9356 -3.3470 -3.3194 48 1 3.9694 -3.3220 -1.5398 49 1 3.6584 -0.8926 -3.3624 50 1 5.1218 -1.3354 -2.4507 51 1 3.7494 1.1486 -0.2607 52 1 5.0718 0.7262 -1.3748 53 1 3.5118 1.2917 -2.0189 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919982824.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:29 Heat of formation + Delta-G solvation = -79.214919 kcal Electronic energy + Delta-G solvation = -31665.634600 eV Core-core repulsion = 27698.796755 eV Total energy + Delta-G solvation = -3966.837845 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.83810 -38.10870 -38.08012 -37.34589 -36.79395 -35.99090 -33.62643 -31.97276 -30.42748 -29.62682 -28.27652 -27.67624 -27.22992 -26.24862 -25.48806 -23.82319 -22.16473 -21.37255 -20.80636 -19.94018 -18.87814 -17.87678 -17.41804 -16.92902 -16.77813 -16.64816 -16.47094 -16.11425 -15.85219 -15.57510 -15.27556 -15.00149 -14.81604 -14.65942 -14.43657 -14.25929 -13.96714 -13.73730 -13.47023 -13.34621 -13.28182 -12.98191 -12.93635 -12.89369 -12.83041 -12.75352 -12.59838 -12.50745 -12.41881 -12.28636 -12.17901 -12.09478 -12.09209 -11.85631 -11.68145 -11.54527 -11.41275 -11.22611 -10.63872 -10.40906 -10.26439 -9.38169 -9.19988 -8.01621 -6.20093 -0.53005 1.43610 1.46792 1.56181 1.98218 2.45268 2.89484 2.94253 2.94951 3.20879 3.39401 3.65483 3.84697 4.03429 4.04050 4.15832 4.22246 4.28957 4.30716 4.36780 4.42344 4.52015 4.55981 4.61187 4.65269 4.67579 4.72280 4.78491 4.84731 4.88596 4.88814 4.92969 4.96385 5.03758 5.04717 5.06770 5.10430 5.20837 5.30193 5.37517 5.44244 5.52542 5.66478 5.95865 5.98538 5.98682 6.13059 6.15774 6.19715 6.23495 6.35895 6.85310 7.48289 8.98399 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020683 B = 0.003036 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.420908 B = 9220.041453 C = 9570.792775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.146 3.854 3 H 0.086 0.914 4 N -1.096 6.096 5 S 2.614 3.386 6 O -0.985 6.985 7 O -1.000 7.000 8 C -0.587 4.587 9 C 0.071 3.929 10 C -0.158 4.158 11 C -0.160 4.160 12 C -0.515 4.515 13 H 0.065 0.935 14 C 0.017 3.983 15 N -0.909 5.909 16 Si 0.954 3.046 17 H -0.264 1.264 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.091 3.909 21 H 0.069 0.931 22 C 0.058 3.942 23 N -0.551 5.551 24 C 0.024 3.976 25 C 0.056 3.944 26 C 0.057 3.943 27 N -0.551 5.551 28 C 0.013 3.987 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.418 0.582 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.068 0.932 36 H 0.041 0.959 37 H 0.032 0.968 38 H 0.070 0.930 39 H 0.038 0.962 40 H 0.029 0.971 41 H 0.260 0.740 42 H 0.036 0.964 43 H 0.100 0.900 44 H 0.024 0.976 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.095 0.905 48 H 0.032 0.968 49 H 0.043 0.957 50 H 0.085 0.915 51 H 0.069 0.931 52 H 0.070 0.930 53 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.348 -11.783 -21.107 24.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.038 3.962 3 H 0.104 0.896 4 N -0.857 5.857 5 S 2.711 3.289 6 O -0.974 6.974 7 O -0.991 6.991 8 C -0.719 4.719 9 C 0.069 3.931 10 C -0.216 4.216 11 C -0.218 4.218 12 C -0.554 4.554 13 H 0.083 0.917 14 C -0.183 4.183 15 N -0.548 5.548 16 Si 0.780 3.220 17 H -0.188 1.188 18 H -0.212 1.212 19 H -0.210 1.210 20 C -0.019 4.019 21 H 0.086 0.914 22 C -0.070 4.070 23 N -0.275 5.275 24 C -0.123 4.123 25 C -0.072 4.072 26 C -0.071 4.071 27 N -0.276 5.276 28 C -0.135 4.135 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.254 0.746 33 H 0.154 0.846 34 H 0.156 0.844 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.089 0.911 39 H 0.058 0.942 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.055 0.945 43 H 0.118 0.882 44 H 0.042 0.958 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.113 0.887 48 H 0.050 0.950 49 H 0.062 0.938 50 H 0.104 0.896 51 H 0.087 0.913 52 H 0.089 0.911 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.304 -11.448 -20.619 23.620 hybrid contribution -1.058 0.311 0.806 1.366 sum 0.245 -11.137 -19.813 22.730 Atomic orbital electron populations 1.22554 0.93192 1.04464 1.03965 1.21054 0.94982 0.96260 0.83942 0.89615 1.55304 1.84201 1.19612 1.26590 1.04697 0.77624 0.73802 0.72811 1.93479 1.63118 1.61007 1.79815 1.93492 1.81193 1.60532 1.63857 1.30584 1.20523 1.11747 1.09059 1.17898 0.95882 0.91122 0.88218 1.22185 0.96941 1.00736 1.01739 1.22212 0.97900 0.98723 1.02983 1.21345 0.93677 1.29643 1.10699 0.91696 1.25683 0.99190 0.96732 0.96658 1.69955 1.27969 1.38484 1.18374 0.85573 0.80497 0.77926 0.78027 1.18767 1.21152 1.21019 1.21859 0.87561 0.96284 0.96240 0.91371 1.22287 1.00801 0.92596 0.91309 1.62200 1.09055 1.16251 1.40016 1.22405 1.01577 0.87298 1.01066 1.22215 0.87468 0.96182 1.01374 1.22220 1.00120 0.93831 0.90945 1.62066 1.08654 1.15911 1.40940 1.22519 1.00848 0.88224 1.01904 0.91753 0.89347 0.90007 0.74555 0.84635 0.84372 0.91273 0.93993 0.94892 0.91118 0.94238 0.95184 0.93011 0.94549 0.88211 0.95785 0.90439 0.90315 0.88692 0.95017 0.93838 0.89625 0.91252 0.91124 0.94502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 9.26 71.98 0.67 -2.42 16 2 C 0.15 3.13 2.17 44.99 0.10 3.23 16 3 H 0.09 2.06 5.72 -2.39 -0.01 2.04 16 4 N -1.10 -28.44 5.20 -169.38 -0.88 -29.32 16 5 S 2.61 94.51 4.47 -56.49 -0.25 94.26 16 6 O -0.98 -39.88 13.62 -127.65 -1.74 -41.62 16 7 O -1.00 -42.64 15.70 -127.65 -2.00 -44.65 16 8 C -0.59 -21.73 4.10 71.98 0.30 -21.44 16 9 C 0.07 3.39 0.52 -52.93 -0.03 3.36 16 10 C -0.16 -7.81 7.78 71.98 0.56 -7.25 16 11 C -0.16 -8.06 7.78 71.98 0.56 -7.50 16 12 C -0.51 -26.49 8.01 25.60 0.21 -26.28 16 13 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 14 C 0.02 0.87 5.15 84.66 0.44 1.31 16 15 N -0.91 -50.41 9.35 21.45 0.20 -50.21 16 16 Si 0.95 41.89 29.54 68.60 2.03 43.92 16 17 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 18 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 20 C 0.09 1.74 1.81 44.92 0.08 1.82 16 21 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 22 C 0.06 0.99 4.37 86.31 0.38 1.37 16 23 N -0.55 -8.80 4.97 -921.96 -4.58 -13.38 16 24 C 0.02 0.30 9.60 127.69 1.23 1.53 16 25 C 0.06 0.89 5.62 86.31 0.49 1.37 16 26 C 0.06 0.99 5.61 86.31 0.48 1.47 16 27 N -0.55 -11.96 4.66 -896.54 -4.18 -16.14 16 28 C 0.01 0.30 8.97 127.69 1.15 1.44 16 29 H 0.06 1.22 5.75 -2.38 -0.01 1.21 16 30 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.12 6.41 -2.38 -0.02 1.11 16 32 H 0.42 9.83 6.83 -96.75 -0.66 9.17 16 33 H 0.14 4.49 8.14 -2.39 -0.02 4.48 16 34 H 0.14 4.47 6.82 -2.39 -0.02 4.46 16 35 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 36 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.03 1.55 5.46 -2.39 -0.01 1.54 16 38 H 0.07 3.88 6.07 -2.39 -0.01 3.86 16 39 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.03 1.45 5.46 -2.38 -0.01 1.44 16 41 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 42 H 0.04 0.69 6.35 -2.39 -0.02 0.68 16 43 H 0.10 1.39 6.52 -2.39 -0.02 1.37 16 44 H 0.02 0.31 8.14 -2.38 -0.02 0.29 16 45 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 46 H 0.08 0.79 8.13 -2.39 -0.02 0.78 16 47 H 0.09 1.17 8.13 -2.39 -0.02 1.15 16 48 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 50 H 0.09 1.36 8.06 -2.39 -0.02 1.35 16 51 H 0.07 1.97 5.16 -2.39 -0.01 1.96 16 52 H 0.07 1.51 8.01 -2.39 -0.02 1.49 16 53 H 0.04 0.73 8.11 -2.39 -0.02 0.71 16 Total: -1.00 -67.11 391.99 -4.58 -71.68 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: 0.24 Total: 33.42 kcal Atomic # 6 Polarization: -54.57 SS G_CDS: 6.59 Total: -47.98 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -9.44 Total: -109.04 kcal Atomic # 8 Polarization: -82.53 SS G_CDS: -3.74 Total: -86.27 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 16 Polarization: 94.51 SS G_CDS: -0.25 Total: 94.26 kcal Total: -67.11 -4.58 -71.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919982824.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.531 kcal (2) G-P(sol) polarization free energy of solvation -67.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds