Wall clock time and date at job start Wed Apr 1 2020 04:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46769 * 2 1 4 4 N 1.46505 * 109.46835 * 240.00479 * 2 1 3 5 5 S 1.65604 * 120.00122 * 96.44280 * 4 2 1 6 6 O 1.42093 * 104.27537 * 181.06787 * 5 4 2 7 7 O 1.42103 * 104.27207 * 308.92436 * 5 4 2 8 8 C 1.81403 * 104.44994 * 64.99513 * 5 4 2 9 9 C 1.52994 * 109.46982 * 179.97438 * 8 5 4 10 10 C 1.52998 * 109.47433 * 300.00231 * 9 8 5 11 11 C 1.53001 * 109.46865 * 60.00545 * 9 8 5 12 12 C 1.50703 * 109.47213 * 179.97438 * 9 8 5 13 13 H 1.08004 * 119.99544 * 0.02562 * 12 9 8 14 14 C 1.37876 * 120.00198 * 180.02562 * 12 9 8 15 15 N 1.31517 * 120.00041 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 120.00080 * 180.02562 * 14 12 9 17 17 H 1.48506 * 109.46957 * 59.99690 * 16 14 12 18 18 H 1.48493 * 109.47225 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47061 * 299.99939 * 16 14 12 20 20 C 1.52998 * 109.47405 * 120.00108 * 2 1 3 21 21 H 1.08997 * 109.48808 * 181.66707 * 20 2 1 22 22 C 1.53053 * 109.48793 * 61.62978 * 20 2 1 23 23 N 1.46955 * 109.36596 * 181.63194 * 22 20 2 24 24 C 1.46895 * 111.00281 * 183.18947 * 23 22 20 25 25 C 1.46959 * 110.88083 * 59.31754 * 23 22 20 26 26 C 1.53048 * 109.36259 * 300.68291 * 25 23 22 27 27 N 1.46951 * 109.48878 * 301.71647 * 20 2 1 28 28 C 1.46902 * 111.00204 * 303.15637 * 27 20 2 29 29 H 1.09002 * 109.47241 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47408 * 299.99644 * 1 2 3 31 31 H 1.09003 * 109.47714 * 60.00005 * 1 2 3 32 32 H 0.97003 * 119.99806 * 276.16423 * 4 2 1 33 33 H 1.08996 * 109.47025 * 300.00312 * 8 5 4 34 34 H 1.08999 * 109.46998 * 60.00041 * 8 5 4 35 35 H 1.09001 * 109.46784 * 59.99992 * 10 9 8 36 36 H 1.09005 * 109.47188 * 179.97438 * 10 9 8 37 37 H 1.08999 * 109.47033 * 300.00060 * 10 9 8 38 38 H 1.08997 * 109.47673 * 59.99795 * 11 9 8 39 39 H 1.09005 * 109.47183 * 179.97438 * 11 9 8 40 40 H 1.09004 * 109.46960 * 299.99413 * 11 9 8 41 41 H 0.96991 * 120.00175 * 180.02562 * 15 14 12 42 42 H 1.09000 * 109.48914 * 301.59524 * 22 20 2 43 43 H 1.09001 * 109.48927 * 61.63858 * 22 20 2 44 44 H 1.09000 * 109.47368 * 59.99518 * 24 23 22 45 45 H 1.08995 * 109.47313 * 179.97438 * 24 23 22 46 46 H 1.08998 * 109.46973 * 299.99950 * 24 23 22 47 47 H 1.08998 * 109.48801 * 60.64844 * 25 23 22 48 48 H 1.08998 * 109.48925 * 180.69278 * 25 23 22 49 49 H 1.09007 * 109.48545 * 178.36755 * 26 25 23 50 50 H 1.08999 * 109.49317 * 298.42968 * 26 25 23 51 51 H 1.08996 * 109.47066 * 66.17247 * 28 27 20 52 52 H 1.08994 * 109.47249 * 186.17677 * 28 27 20 53 53 H 1.09002 * 109.46606 * 306.17726 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 16 2.4460 0.1802 -2.5384 6 8 2.8370 -0.8047 -3.4851 7 8 1.3287 1.0248 -2.7788 8 6 3.8793 1.1566 -2.0067 9 6 4.3737 2.0138 -3.1736 10 6 4.7779 1.1067 -4.3375 11 6 3.2548 2.9547 -3.6250 12 6 5.5641 2.8255 -2.7317 13 1 5.9315 2.7382 -1.7199 14 6 6.1841 3.6793 -3.6191 15 7 5.7369 3.7851 -4.8514 16 14 7.6601 4.6849 -3.0716 17 1 8.7463 3.7717 -2.6339 18 1 8.1398 5.5169 -4.2041 19 1 7.2678 5.5649 -1.9415 20 6 2.0401 -0.7212 1.2492 21 1 3.1296 -0.6956 1.2645 22 6 1.5639 -2.1757 1.2292 23 7 2.0222 -2.8553 2.4489 24 6 1.6491 -4.2759 2.4319 25 6 1.4986 -2.1875 3.6488 26 6 1.9748 -0.7331 3.6687 27 7 1.5169 -0.0532 2.4490 28 6 1.8905 1.3674 2.4658 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.0949 -1.6575 -1.2008 33 1 3.5915 1.8025 -1.1773 34 1 4.6766 0.4863 -1.6854 35 1 3.9166 0.5200 -4.6569 36 1 5.1297 1.7174 -5.1690 37 1 5.5750 0.4364 -4.0158 38 1 2.9668 3.6010 -2.7959 39 1 3.6071 3.5657 -4.4561 40 1 2.3935 2.3680 -3.9446 41 1 6.1733 4.3855 -5.4758 42 1 0.4751 -2.2013 1.1860 43 1 1.9745 -2.6808 0.3549 44 1 2.1053 -4.7612 1.5691 45 1 2.0007 -4.7549 3.3457 46 1 0.5647 -4.3660 2.3681 47 1 0.4091 -2.2133 3.6330 48 1 1.8617 -2.7016 4.5387 49 1 1.5638 -0.2279 4.5428 50 1 3.0636 -0.7075 3.7120 51 1 1.3919 1.8839 1.6456 52 1 1.5864 1.8119 3.4134 53 1 2.9704 1.4604 2.3507 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919982826.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:35 Heat of formation + Delta-G solvation = -78.062123 kcal Electronic energy + Delta-G solvation = -31484.751967 eV Core-core repulsion = 27517.964110 eV Total energy + Delta-G solvation = -3966.787856 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.89306 -38.16010 -38.12514 -37.40735 -36.87143 -36.07974 -33.63761 -31.98620 -30.18136 -29.76053 -28.33338 -27.69039 -27.25105 -26.29790 -25.53090 -24.01205 -22.37034 -21.40610 -20.40208 -20.13457 -18.90651 -17.92226 -17.58169 -16.91484 -16.78546 -16.66614 -16.43351 -16.26731 -15.84266 -15.60228 -15.32975 -14.98906 -14.90190 -14.67370 -14.43554 -14.40474 -13.99892 -13.80806 -13.58007 -13.33262 -13.16537 -13.05232 -12.93101 -12.86383 -12.82184 -12.75631 -12.63099 -12.53778 -12.50191 -12.27712 -12.20228 -12.15184 -12.06657 -11.95322 -11.76352 -11.57339 -11.38771 -11.32026 -10.71844 -10.41322 -10.38128 -9.40908 -9.23621 -8.02936 -6.21625 -0.61841 1.45063 1.45566 1.52714 1.83911 2.44063 2.79166 2.92431 2.97031 3.19195 3.32637 3.57607 3.83044 3.94545 4.00034 4.10064 4.17467 4.20678 4.30621 4.36990 4.40616 4.51870 4.57599 4.59615 4.61775 4.65520 4.73449 4.77134 4.84834 4.86673 4.89775 4.96172 4.98676 5.01934 5.03728 5.08385 5.08637 5.10836 5.26309 5.38637 5.44477 5.50985 5.64335 5.91428 5.94993 5.97573 6.08570 6.11518 6.13158 6.17027 6.34149 6.82741 7.46635 8.96788 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014278 B = 0.003303 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.591856 B = 8475.733683 C = 9276.297729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.153 3.847 3 H 0.085 0.915 4 N -1.108 6.108 5 S 2.614 3.386 6 O -0.992 6.992 7 O -0.983 6.983 8 C -0.587 4.587 9 C 0.071 3.929 10 C -0.160 4.160 11 C -0.159 4.159 12 C -0.518 4.518 13 H 0.062 0.938 14 C 0.018 3.982 15 N -0.908 5.908 16 Si 0.953 3.047 17 H -0.273 1.273 18 H -0.288 1.288 19 H -0.271 1.271 20 C 0.086 3.914 21 H 0.050 0.950 22 C 0.059 3.941 23 N -0.559 5.559 24 C 0.025 3.975 25 C 0.057 3.943 26 C 0.056 3.944 27 N -0.536 5.536 28 C 0.010 3.990 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.049 0.951 32 H 0.420 0.580 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.032 0.968 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.070 0.930 40 H 0.033 0.967 41 H 0.261 0.739 42 H 0.051 0.949 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.029 0.971 47 H 0.041 0.959 48 H 0.093 0.907 49 H 0.099 0.901 50 H 0.035 0.965 51 H 0.072 0.928 52 H 0.087 0.913 53 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.461 -11.767 19.066 24.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.045 3.955 3 H 0.103 0.897 4 N -0.869 5.869 5 S 2.711 3.289 6 O -0.983 6.983 7 O -0.973 6.973 8 C -0.720 4.720 9 C 0.069 3.931 10 C -0.218 4.218 11 C -0.216 4.216 12 C -0.557 4.557 13 H 0.080 0.920 14 C -0.181 4.181 15 N -0.546 5.546 16 Si 0.779 3.221 17 H -0.198 1.198 18 H -0.213 1.213 19 H -0.196 1.196 20 C -0.024 4.024 21 H 0.068 0.932 22 C -0.070 4.070 23 N -0.284 5.284 24 C -0.123 4.123 25 C -0.071 4.071 26 C -0.072 4.072 27 N -0.261 5.261 28 C -0.137 4.137 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.257 0.743 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.098 0.902 46 H 0.048 0.952 47 H 0.060 0.940 48 H 0.111 0.889 49 H 0.117 0.883 50 H 0.053 0.947 51 H 0.091 0.909 52 H 0.106 0.894 53 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -9.914 -11.546 18.065 23.621 hybrid contribution 1.441 0.475 0.207 1.531 sum -8.473 -11.071 18.273 22.983 Atomic orbital electron populations 1.22198 0.93698 1.02999 1.02750 1.20863 0.95986 0.95455 0.83212 0.89677 1.55576 1.81896 1.19385 1.30068 1.04754 0.76446 0.74353 0.73329 1.93507 1.84998 1.59622 1.60130 1.93515 1.50126 1.69633 1.84009 1.30472 1.18211 1.13242 1.10039 1.17901 0.94724 0.91604 0.88894 1.22212 0.99570 0.98338 1.01693 1.22195 0.96173 1.00951 1.02330 1.21253 1.13037 1.23581 0.97813 0.91972 1.25666 0.99648 0.97779 0.95014 1.69933 1.41591 1.38031 1.05071 0.85690 0.79905 0.78756 0.77738 1.19815 1.21319 1.19594 1.21809 0.97380 0.93735 0.89519 0.93231 1.22232 0.98917 0.92650 0.93171 1.62133 1.60244 1.03502 1.02502 1.22386 0.98849 0.87501 1.03543 1.22224 0.97929 0.93803 0.93144 1.22258 0.98302 0.94042 0.92591 1.62158 1.59418 1.02905 1.01641 1.22571 0.98992 0.88154 1.04032 0.91545 0.89537 0.93200 0.74270 0.84819 0.84753 0.94954 0.90997 0.94228 0.94042 0.91094 0.94822 0.92909 0.93060 0.90071 0.91147 0.90225 0.95233 0.94026 0.88858 0.88267 0.94656 0.90935 0.89437 0.95504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 8.98 71.98 0.65 -2.82 16 2 C 0.15 3.47 2.01 44.99 0.09 3.56 16 3 H 0.09 1.99 5.62 -2.39 -0.01 1.97 16 4 N -1.11 -28.43 5.32 -169.38 -0.90 -29.33 16 5 S 2.61 93.69 4.41 -56.49 -0.25 93.44 16 6 O -0.99 -41.02 15.70 -127.65 -2.00 -43.02 16 7 O -0.98 -39.92 14.88 -127.65 -1.90 -41.82 16 8 C -0.59 -22.07 4.90 71.98 0.35 -21.71 16 9 C 0.07 3.40 0.52 -52.93 -0.03 3.38 16 10 C -0.16 -8.00 7.78 71.98 0.56 -7.44 16 11 C -0.16 -7.83 7.77 71.98 0.56 -7.27 16 12 C -0.52 -26.84 8.01 25.60 0.21 -26.63 16 13 H 0.06 3.09 7.74 -2.91 -0.02 3.06 16 14 C 0.02 0.97 5.15 84.65 0.44 1.41 16 15 N -0.91 -50.25 9.35 21.45 0.20 -50.04 16 16 Si 0.95 41.97 29.54 68.60 2.03 44.00 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 18 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 20 C 0.09 1.70 1.96 44.92 0.09 1.79 16 21 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 22 C 0.06 1.05 4.38 86.31 0.38 1.43 16 23 N -0.56 -9.27 4.97 -921.96 -4.58 -13.85 16 24 C 0.02 0.32 9.60 127.69 1.23 1.55 16 25 C 0.06 0.79 5.62 86.31 0.49 1.28 16 26 C 0.06 0.82 5.61 86.31 0.48 1.30 16 27 N -0.54 -9.28 3.95 -896.56 -3.54 -12.82 16 28 C 0.01 0.17 8.91 127.69 1.14 1.31 16 29 H 0.07 1.31 6.44 -2.39 -0.02 1.30 16 30 H 0.09 1.70 7.31 -2.38 -0.02 1.68 16 31 H 0.05 1.31 7.58 -2.39 -0.02 1.29 16 32 H 0.42 9.11 6.95 -96.74 -0.67 8.43 16 33 H 0.13 4.44 7.46 -2.39 -0.02 4.42 16 34 H 0.13 4.58 8.14 -2.39 -0.02 4.56 16 35 H 0.03 1.54 5.46 -2.39 -0.01 1.53 16 36 H 0.07 3.91 6.07 -2.38 -0.01 3.90 16 37 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.07 3.83 6.07 -2.38 -0.01 3.82 16 40 H 0.03 1.58 5.47 -2.38 -0.01 1.57 16 41 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 42 H 0.05 0.92 6.39 -2.39 -0.02 0.91 16 43 H 0.08 1.41 6.53 -2.39 -0.02 1.39 16 44 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 45 H 0.08 0.84 8.13 -2.39 -0.02 0.82 16 46 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 47 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.09 1.01 8.13 -2.39 -0.02 1.00 16 49 H 0.10 1.10 8.07 -2.38 -0.02 1.08 16 50 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 51 H 0.07 1.26 6.43 -2.39 -0.02 1.25 16 52 H 0.09 1.14 8.03 -2.39 -0.02 1.12 16 53 H 0.03 0.48 8.12 -2.39 -0.02 0.46 16 Total: -1.00 -66.14 396.07 -4.10 -70.24 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: 0.22 Total: 32.09 kcal Atomic # 6 Polarization: -55.50 SS G_CDS: 6.62 Total: -48.87 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -8.82 Total: -106.05 kcal Atomic # 8 Polarization: -80.94 SS G_CDS: -3.90 Total: -84.84 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Atomic # 16 Polarization: 93.69 SS G_CDS: -0.25 Total: 93.44 kcal Total: -66.14 -4.10 -70.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919982826.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.823 kcal (2) G-P(sol) polarization free energy of solvation -66.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds